panda-research-tools 0.1.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- panda_research_tools-0.1.0/.github/release-notes.md +13 -0
- panda_research_tools-0.1.0/.github/workflows/autofix.yml +52 -0
- panda_research_tools-0.1.0/.github/workflows/ci.yml +75 -0
- panda_research_tools-0.1.0/.github/workflows/publish-mcp-registry.yml +43 -0
- panda_research_tools-0.1.0/.github/workflows/release.yml +91 -0
- panda_research_tools-0.1.0/.gitignore +8 -0
- panda_research_tools-0.1.0/.pre-commit-config.yaml +7 -0
- panda_research_tools-0.1.0/Dockerfile +13 -0
- panda_research_tools-0.1.0/LICENSE +21 -0
- panda_research_tools-0.1.0/PKG-INFO +113 -0
- panda_research_tools-0.1.0/README.md +89 -0
- panda_research_tools-0.1.0/glama.json +4 -0
- panda_research_tools-0.1.0/pyproject.toml +56 -0
- panda_research_tools-0.1.0/scripts/lint-fix.sh +19 -0
- panda_research_tools-0.1.0/server.json +33 -0
- panda_research_tools-0.1.0/src/panda_research_tools/__init__.py +3 -0
- panda_research_tools-0.1.0/src/panda_research_tools/__main__.py +4 -0
- panda_research_tools-0.1.0/src/panda_research_tools/server.py +5 -0
- panda_research_tools-0.1.0/uv.lock +832 -0
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**Install** from [PyPI](https://pypi.org/project/panda-research-tools/) (needs [uv](https://docs.astral.sh/uv/) and a free [Apify token](https://console.apify.com/settings/integrations)):
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```bash
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uvx panda-research-tools@{{VERSION}}
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```
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- **Cursor / Claude / VS Code:** command `uvx`, args `["panda-research-tools"]`, env `APIFY_TOKEN`.
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- Official MCP Registry name: `io.github.pandadad0214/panda-research-tools`.
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### Added
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- First PyPI and Official MCP Registry release of this focused domain server ({{VERSION}}).
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Full docs: [README](https://github.com/pandadad0214/panda-research-tools#readme).
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name: Autofix
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on:
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push:
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branches: [master]
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permissions:
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contents: write
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concurrency:
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group: autofix-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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ruff:
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name: Ruff autofix
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runs-on: ubuntu-latest
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timeout-minutes: 10
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# Loop protection: skip bot pushes and [skip ci] commits.
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# GITHUB_TOKEN pushes also do not re-trigger workflows.
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if: >-
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github.actor != 'github-actions[bot]'
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&& !contains(github.event.head_commit.message, '[skip ci]')
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steps:
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- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
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- uses: astral-sh/setup-uv@68559e99cc807c1eb7e9238fd43a15bba460eec2 # v10.3.3
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with:
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python-version: "3.13"
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- name: Autofix with ruff
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run: |
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set -euo pipefail
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uv run --with ruff==0.17.3 ruff check . --fix
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uv run --with ruff==0.17.3 ruff format .
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- name: Commit and push if needed
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run: |
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set -euo pipefail
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if git diff --quiet && git diff --cached --quiet; then
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echo "No ruff changes"
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exit 0
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fi
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git config user.name "github-actions[bot]"
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git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
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git add -A
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git commit -m "style: ruff autofix"
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git push
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- name: Verify clean
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run: |
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set -euo pipefail
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:
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uv run --with ruff==0.17.3 ruff check .
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uv run --with ruff==0.17.3 ruff format --check .
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name: CI
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on:
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push:
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branches: [master]
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pull_request:
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workflow_dispatch:
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permissions:
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contents: read
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concurrency:
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group: ci-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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lint:
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name: Lint (ruff)
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runs-on: ubuntu-latest
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timeout-minutes: 10
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steps:
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- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
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with:
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persist-credentials: false
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- uses: astral-sh/setup-uv@68559e99cc807c1eb7e9238fd43a15bba460eec2 # v10.3.3
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with:
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python-version: "3.13"
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- run: uv run --with ruff==0.17.3 ruff format --check .
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- run: uv run --with ruff==0.17.3 ruff check .
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registry-metadata:
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name: Validate server.json
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runs-on: ubuntu-latest
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timeout-minutes: 10
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env:
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MCP_PUBLISHER_VERSION: v1.8.7
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MCP_PUBLISHER_SHA256: 00b21004149a4ce66f0782508ae4a2bce67d1bea395a8da0bd8028159fb59579
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steps:
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- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
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with:
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persist-credentials: false
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- name: server.json and glama.json are valid JSON
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run: |
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python3 -m json.tool server.json > /dev/null
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python3 -m json.tool glama.json > /dev/null
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- name: Registry description stays within MCP 100-char limit
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run: |
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python3 - <<'PY'
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import json, sys
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desc = json.load(open("server.json"))["description"]
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n = len(desc)
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print(f"description length={n}/100")
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if n > 100:
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sys.stderr.write(
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f"ERROR: MCP Registry requires body.description <= 100 chars; got {n}: {desc!r}\n"
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)
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sys.exit(1)
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PY
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- name: Versions and registry name stay in sync
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run: |
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v="$(python3 -c 'import tomllib;print(tomllib.load(open("pyproject.toml","rb"))["project"]["version"])')"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["version"])')" = "$v"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["packages"][0]["version"])')" = "$v"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["name"])')" = "io.github.pandadad0214/panda-research-tools"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["packages"][0]["identifier"])')" = "panda-research-tools"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["packages"][0]["transport"]["type"])')" = "stdio"
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grep -q 'panda-research-tools = "panda_research_tools.server:main"' pyproject.toml
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grep -q 'mcp-name: io.github.pandadad0214/panda-research-tools' README.md
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run: |
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curl -fsSL -o mcp-publisher.tgz "https://github.com/modelcontextprotocol/registry/releases/download/${MCP_PUBLISHER_VERSION}/mcp-publisher_linux_amd64.tar.gz"
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echo "${MCP_PUBLISHER_SHA256} mcp-publisher.tgz" | sha256sum -c -
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tar xzf mcp-publisher.tgz mcp-publisher
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- run: ./mcp-publisher validate
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name: Publish to MCP Registry
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# Publishes server.json to the official MCP Registry when a release tag is pushed.
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# Uses GitHub OIDC, so no registry token is stored in this repository.
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# This stdio package is io.github.pandadad0214/panda-research-tools.
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# Do not publish it as io.github.pandadad0214/panda-research-mcp (hosted companion).
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on:
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push:
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tags: ["v*"]
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workflow_dispatch:
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permissions:
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contents: read
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jobs:
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publish:
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runs-on: ubuntu-latest
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timeout-minutes: 10
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permissions:
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contents: read
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id-token: write
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env:
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MCP_PUBLISHER_VERSION: v1.8.7
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MCP_PUBLISHER_SHA256: 00b21004149a4ce66f0782508ae4a2bce67d1bea395a8da0bd8028159fb59579
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steps:
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- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
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with:
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persist-credentials: false
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- name: Check the tag matches server.json and pyproject.toml
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if: startsWith(github.ref, 'refs/tags/v')
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run: |
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test "v$(python3 -c 'import json;print(json.load(open("server.json"))["version"])')" = "${GITHUB_REF_NAME}"
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test "v$(python3 -c 'import tomllib;print(tomllib.load(open("pyproject.toml","rb"))["project"]["version"])')" = "${GITHUB_REF_NAME}"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["packages"][0]["version"])')" = "${GITHUB_REF_NAME#v}"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["name"])')" = "io.github.pandadad0214/panda-research-tools"
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- name: Install mcp-publisher (pinned, checksum verified)
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run: |
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curl -fsSL -o mcp-publisher.tgz "https://github.com/modelcontextprotocol/registry/releases/download/${MCP_PUBLISHER_VERSION}/mcp-publisher_linux_amd64.tar.gz"
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echo "${MCP_PUBLISHER_SHA256} mcp-publisher.tgz" | sha256sum -c -
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tar xzf mcp-publisher.tgz mcp-publisher
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- run: ./mcp-publisher validate
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- run: ./mcp-publisher login github-oidc
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- run: ./mcp-publisher publish
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name: Release
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# On a v* tag: verify versions, lint, build wheel + sdist, publish to PyPI
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# (Trusted Publishing / OIDC, no stored token), then create the GitHub Release.
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# Re-publish an existing tag to PyPI with: Actions -> Release -> Run workflow (tag = vX.Y.Z).
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on:
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push:
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tags: ["v*"]
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workflow_dispatch:
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inputs:
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tag:
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description: "Existing release tag to publish to PyPI (e.g. v0.1.0)"
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required: true
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permissions:
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contents: read
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jobs:
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build:
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runs-on: ubuntu-latest
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timeout-minutes: 15
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env:
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TAG: ${{ github.event.inputs.tag || github.ref_name }}
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steps:
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- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
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with:
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ref: ${{ github.event.inputs.tag || github.ref }}
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persist-credentials: false
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- uses: astral-sh/setup-uv@68559e99cc807c1eb7e9238fd43a15bba460eec2 # v10.3.3
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- name: Tag matches pyproject, server.json and __init__
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run: |
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v="${TAG#v}"
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test "$(python3 -c 'import tomllib;print(tomllib.load(open("pyproject.toml","rb"))["project"]["version"])')" = "$v"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["version"])')" = "$v"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["packages"][0]["version"])')" = "$v"
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test "$(python3 -c 'import json;print(json.load(open("server.json"))["packages"][0]["identifier"])')" = "panda-research-tools"
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grep -q "__version__ = \"$v\"" src/panda_research_tools/__init__.py
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- name: Lint (ruff)
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run: |
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uv run --with ruff==0.17.3 ruff format --check .
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uv run --with ruff==0.17.3 ruff check .
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- run: uv build
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- uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2
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with:
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name: dist
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path: dist/
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pypi:
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needs: build
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runs-on: ubuntu-latest
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timeout-minutes: 10
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environment:
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name: pypi
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url: https://pypi.org/project/panda-research-tools/
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permissions:
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id-token: write
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steps:
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- uses: actions/download-artifact@9000827ccba6bdab643e8b6fd33ac0654aef8333 # v8.0.2
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with:
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name: dist
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path: dist/
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- name: Keep only wheel and sdist
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run: find dist -type f ! -name '*.whl' ! -name '*.tar.gz' -delete && ls dist
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- uses: pypa/gh-action-pypi-publish@7245906fb61fa33a13554f9d5fb856fe61758086 # v1.14.3
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with:
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skip-existing: true
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github-release:
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needs: pypi
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if: github.event_name == 'push'
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runs-on: ubuntu-latest
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timeout-minutes: 10
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permissions:
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contents: write
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steps:
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- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
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with:
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persist-credentials: false
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- uses: actions/download-artifact@9000827ccba6bdab643e8b6fd33ac0654aef8333 # v8.0.2
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with:
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name: dist
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path: dist/
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- name: Create GitHub Release
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env:
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GH_TOKEN: ${{ github.token }}
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run: |
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# release-notes.md is a template: {{VERSION}} becomes the tag's version (no leading v).
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sed "s/{{VERSION}}/${GITHUB_REF_NAME#v}/g" .github/release-notes.md > notes.md
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gh release create "$GITHUB_REF_NAME" dist/* \
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--repo "$GITHUB_REPOSITORY" --title "$GITHUB_REF_NAME" \
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--notes-file notes.md --verify-tag --latest
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# Runs the MCP server over stdio:
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# docker build -t panda-research-tools .
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# docker run -i --rm -e APIFY_TOKEN panda-research-tools
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FROM python:3.13-slim
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ENV PYTHONDONTWRITEBYTECODE=1 PYTHONUNBUFFERED=1 PIP_NO_CACHE_DIR=1 PIP_DISABLE_PIP_VERSION_CHECK=1
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WORKDIR /app
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COPY pyproject.toml README.md LICENSE ./
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COPY src ./src
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RUN pip install . && useradd --create-home --uid 10001 mcp
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USER mcp
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ENTRYPOINT ["panda-research-tools"]
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MIT License
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Copyright (c) 2026 Panda Federation
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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@@ -0,0 +1,113 @@
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Metadata-Version: 2.5
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Name: panda-research-tools
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Version: 0.1.0
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Summary: Panda Research Tools: scholarly integrity and papers: citation checks, literature and PubMed search, academic experts, PDF tables, Wayback Machine snapshots.
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Project-URL: Homepage, https://github.com/pandadad0214/panda-research-tools
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Project-URL: Source, https://github.com/pandadad0214/panda-research-tools
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Project-URL: Umbrella index, https://github.com/pandadad0214/panda-federation-tools
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Project-URL: Apify Store, https://apify.com/pandadad0214
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Author: Panda Federation (pandadad0214)
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License-Expression: MIT
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License-File: LICENSE
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Keywords: apify,mcp,mcp-server,panda-federation,research
|
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Classifier: Development Status :: 5 - Production/Stable
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Classifier: Intended Audience :: Developers
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3 :: Only
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Classifier: Typing :: Typed
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Requires-Python: >=3.11
|
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Requires-Dist: panda-federation-tools<2,>=1.7.0
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Description-Content-Type: text/markdown
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+
|
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+
# Panda Research Tools
|
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+
|
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<!-- mcp-name: io.github.pandadad0214/panda-research-tools -->
|
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|
+
|
|
29
|
+
Give Claude, Cursor or any MCP client 7 research-integrity tools: catch fake or retracted citations, search OpenAlex and PubMed, find experts, pull PDF tables and find Wayback snapshots. Each tool runs one public-data Apify Actor on your own Apify account and is priced per result. Part of the [Panda Federation](https://github.com/pandadad0214/panda-federation-tools) toolkit (36 tools in four focused servers).
|
|
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+
|
|
31
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+
[](https://pypi.org/project/panda-research-tools/)
|
|
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|
+
[](https://github.com/pandadad0214/panda-research-tools/releases/latest)
|
|
33
|
+
[](https://github.com/pandadad0214/panda-federation-tools)
|
|
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+
[](https://apify.com/pandadad0214)
|
|
35
|
+
[](LICENSE)
|
|
36
|
+
|
|
37
|
+
## How to use this
|
|
38
|
+
|
|
39
|
+
```bash
|
|
40
|
+
uvx panda-research-tools
|
|
41
|
+
```
|
|
42
|
+
|
|
43
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+
1. **Get a free Apify token** at [console.apify.com/settings/integrations](https://console.apify.com/settings/integrations) (the free plan includes $5 of monthly credit) and install [uv](https://docs.astral.sh/uv/).
|
|
44
|
+
2. **Add the server to your MCP client:** command `uvx`, args `["panda-research-tools"]`, env `APIFY_TOKEN` (Cursor JSON below).
|
|
45
|
+
3. **Ask in plain words**, e.g. "Check these 12 references for fake or retracted papers and format the good ones in APA." Start with one or two inputs and read the `summary` / `agentSummary` line before widening.
|
|
46
|
+
|
|
47
|
+
```json
|
|
48
|
+
{"mcpServers": {"panda-research-tools": {"command": "uvx", "args": ["panda-research-tools"], "env": {"APIFY_TOKEN": "apify_api_YOUR_TOKEN"}}}}
|
|
49
|
+
```
|
|
50
|
+
|
|
51
|
+
## For AI agents
|
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+
|
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| Field | Value |
|
|
54
|
+
| --- | --- |
|
|
55
|
+
| Purpose | Focused MCP server with 7 research-integrity tools: catch fake or retracted citations, search OpenAlex and PubMed, find experts, pull PDF tables and find Wayback snapshots. |
|
|
56
|
+
| Use when | A task needs verified scholarly sources: citation checks, literature or PubMed search, expert finding, PDF tables or archived page snapshots. |
|
|
57
|
+
| Do not use when | The task is about federal money (use `panda-public-funding-tools`), sales leads (`panda-leads-tools`) or site/email safety (`panda-web-security-tools`). |
|
|
58
|
+
| Install | `uvx panda-research-tools` (stdio, Python 3.11+) |
|
|
59
|
+
| Auth | `APIFY_TOKEN` env var; runs bill to that Apify account. |
|
|
60
|
+
| Tools | 7, listed under [Tools](#tools-7) |
|
|
61
|
+
| Outputs | JSON rows plus a one-line `summary` / `agentSummary`; Excel/CSV files on the Apify run. |
|
|
62
|
+
| Side effects and cost | Starts Apify runs; pay per result; empty runs are not charged per result; `run_max_charge_usd` caps each call. Read-only toward third-party sites. |
|
|
63
|
+
|
|
64
|
+
## Other ways to install
|
|
65
|
+
|
|
66
|
+
From the umbrella package (same tools):
|
|
67
|
+
|
|
68
|
+
```bash
|
|
69
|
+
uvx --from panda-federation-tools panda-research-tools
|
|
70
|
+
```
|
|
71
|
+
|
|
72
|
+
From this repo instead of PyPI:
|
|
73
|
+
|
|
74
|
+
```bash
|
|
75
|
+
uvx --from git+https://github.com/pandadad0214/panda-research-tools panda-research-tools
|
|
76
|
+
```
|
|
77
|
+
|
|
78
|
+
Cursor / Claude / VS Code: command `uvx`, args `["panda-research-tools"]`, env `APIFY_TOKEN`.
|
|
79
|
+
|
|
80
|
+
Docker (stdio, non-root). `APIFY_TOKEN` is required:
|
|
81
|
+
|
|
82
|
+
```bash
|
|
83
|
+
docker build -t panda-research-tools .
|
|
84
|
+
docker run -i --rm -e APIFY_TOKEN panda-research-tools
|
|
85
|
+
```
|
|
86
|
+
|
|
87
|
+
Official MCP Registry name for this stdio package: `io.github.pandadad0214/panda-research-tools` ([server.json](server.json)). That name is separate from the hosted companion `io.github.pandadad0214/panda-research-mcp`. Registry clients install the PyPI package with `uvx panda-research-tools`. The git command above stays the install path from this repo.
|
|
88
|
+
|
|
89
|
+
## Tools (7)
|
|
90
|
+
|
|
91
|
+
- `reference_checker`
|
|
92
|
+
- `citation_formatter`
|
|
93
|
+
- `literature_search`
|
|
94
|
+
- `pubmed_evidence_table`
|
|
95
|
+
- `researcher_expert_finder`
|
|
96
|
+
- `pdf_table_extractor`
|
|
97
|
+
- `wayback_snapshot_finder`
|
|
98
|
+
|
|
99
|
+
Each tool runs one Apify Actor on your account. Empty runs are not charged per result; every call is capped by `run_max_charge_usd`. Full schemas and prices: [umbrella README](https://github.com/pandadad0214/panda-federation-tools#domain-tool-lists).
|
|
100
|
+
|
|
101
|
+
## Sibling domain servers
|
|
102
|
+
|
|
103
|
+
- [`panda-public-funding-tools`](https://github.com/pandadad0214/panda-public-funding-tools) — US federal money, filings and safety monitors: grants, contracts, SBIR/STTR topics, SEC financials, clinical trials, Federal Register, recalls, VIN decode.
|
|
104
|
+
- [`panda-leads-tools`](https://github.com/pandadad0214/panda-leads-tools) — Public leads and enrichment: NPI providers, podcasts, local businesses, hiring signals, website enrichment, team pages, topic trends, trucking carriers, IRS nonprofits, building permits, new Florida, Texas and New York businesses, H-1B visa sponsors, EU tenders.
|
|
105
|
+
- [`panda-web-security-tools`](https://github.com/pandadad0214/panda-web-security-tools) — Site, email and agent safety: SPF/DKIM/DMARC audits, AI/SEO readiness, website change monitoring, hidden AI instructions scanner, bulk domain WHOIS/expiry, broken link checker.
|
|
106
|
+
|
|
107
|
+
Index / compatibility mega-server: [panda-federation-tools](https://github.com/pandadad0214/panda-federation-tools) (use only when you truly need every tool).
|
|
108
|
+
|
|
109
|
+
## TDQS standard
|
|
110
|
+
|
|
111
|
+
New tools join this domain only while the count stays in the 3–15 band. Descriptions follow the checklist in the umbrella repo. See [tdqs-standard](https://github.com/pandadad0214/panda-federation-tools) / project docs.
|
|
112
|
+
|
|
113
|
+
Built by Panda Federation. MIT licensed.
|
|
@@ -0,0 +1,89 @@
|
|
|
1
|
+
# Panda Research Tools
|
|
2
|
+
|
|
3
|
+
<!-- mcp-name: io.github.pandadad0214/panda-research-tools -->
|
|
4
|
+
|
|
5
|
+
Give Claude, Cursor or any MCP client 7 research-integrity tools: catch fake or retracted citations, search OpenAlex and PubMed, find experts, pull PDF tables and find Wayback snapshots. Each tool runs one public-data Apify Actor on your own Apify account and is priced per result. Part of the [Panda Federation](https://github.com/pandadad0214/panda-federation-tools) toolkit (36 tools in four focused servers).
|
|
6
|
+
|
|
7
|
+
[](https://pypi.org/project/panda-research-tools/)
|
|
8
|
+
[](https://github.com/pandadad0214/panda-research-tools/releases/latest)
|
|
9
|
+
[](https://github.com/pandadad0214/panda-federation-tools)
|
|
10
|
+
[](https://apify.com/pandadad0214)
|
|
11
|
+
[](LICENSE)
|
|
12
|
+
|
|
13
|
+
## How to use this
|
|
14
|
+
|
|
15
|
+
```bash
|
|
16
|
+
uvx panda-research-tools
|
|
17
|
+
```
|
|
18
|
+
|
|
19
|
+
1. **Get a free Apify token** at [console.apify.com/settings/integrations](https://console.apify.com/settings/integrations) (the free plan includes $5 of monthly credit) and install [uv](https://docs.astral.sh/uv/).
|
|
20
|
+
2. **Add the server to your MCP client:** command `uvx`, args `["panda-research-tools"]`, env `APIFY_TOKEN` (Cursor JSON below).
|
|
21
|
+
3. **Ask in plain words**, e.g. "Check these 12 references for fake or retracted papers and format the good ones in APA." Start with one or two inputs and read the `summary` / `agentSummary` line before widening.
|
|
22
|
+
|
|
23
|
+
```json
|
|
24
|
+
{"mcpServers": {"panda-research-tools": {"command": "uvx", "args": ["panda-research-tools"], "env": {"APIFY_TOKEN": "apify_api_YOUR_TOKEN"}}}}
|
|
25
|
+
```
|
|
26
|
+
|
|
27
|
+
## For AI agents
|
|
28
|
+
|
|
29
|
+
| Field | Value |
|
|
30
|
+
| --- | --- |
|
|
31
|
+
| Purpose | Focused MCP server with 7 research-integrity tools: catch fake or retracted citations, search OpenAlex and PubMed, find experts, pull PDF tables and find Wayback snapshots. |
|
|
32
|
+
| Use when | A task needs verified scholarly sources: citation checks, literature or PubMed search, expert finding, PDF tables or archived page snapshots. |
|
|
33
|
+
| Do not use when | The task is about federal money (use `panda-public-funding-tools`), sales leads (`panda-leads-tools`) or site/email safety (`panda-web-security-tools`). |
|
|
34
|
+
| Install | `uvx panda-research-tools` (stdio, Python 3.11+) |
|
|
35
|
+
| Auth | `APIFY_TOKEN` env var; runs bill to that Apify account. |
|
|
36
|
+
| Tools | 7, listed under [Tools](#tools-7) |
|
|
37
|
+
| Outputs | JSON rows plus a one-line `summary` / `agentSummary`; Excel/CSV files on the Apify run. |
|
|
38
|
+
| Side effects and cost | Starts Apify runs; pay per result; empty runs are not charged per result; `run_max_charge_usd` caps each call. Read-only toward third-party sites. |
|
|
39
|
+
|
|
40
|
+
## Other ways to install
|
|
41
|
+
|
|
42
|
+
From the umbrella package (same tools):
|
|
43
|
+
|
|
44
|
+
```bash
|
|
45
|
+
uvx --from panda-federation-tools panda-research-tools
|
|
46
|
+
```
|
|
47
|
+
|
|
48
|
+
From this repo instead of PyPI:
|
|
49
|
+
|
|
50
|
+
```bash
|
|
51
|
+
uvx --from git+https://github.com/pandadad0214/panda-research-tools panda-research-tools
|
|
52
|
+
```
|
|
53
|
+
|
|
54
|
+
Cursor / Claude / VS Code: command `uvx`, args `["panda-research-tools"]`, env `APIFY_TOKEN`.
|
|
55
|
+
|
|
56
|
+
Docker (stdio, non-root). `APIFY_TOKEN` is required:
|
|
57
|
+
|
|
58
|
+
```bash
|
|
59
|
+
docker build -t panda-research-tools .
|
|
60
|
+
docker run -i --rm -e APIFY_TOKEN panda-research-tools
|
|
61
|
+
```
|
|
62
|
+
|
|
63
|
+
Official MCP Registry name for this stdio package: `io.github.pandadad0214/panda-research-tools` ([server.json](server.json)). That name is separate from the hosted companion `io.github.pandadad0214/panda-research-mcp`. Registry clients install the PyPI package with `uvx panda-research-tools`. The git command above stays the install path from this repo.
|
|
64
|
+
|
|
65
|
+
## Tools (7)
|
|
66
|
+
|
|
67
|
+
- `reference_checker`
|
|
68
|
+
- `citation_formatter`
|
|
69
|
+
- `literature_search`
|
|
70
|
+
- `pubmed_evidence_table`
|
|
71
|
+
- `researcher_expert_finder`
|
|
72
|
+
- `pdf_table_extractor`
|
|
73
|
+
- `wayback_snapshot_finder`
|
|
74
|
+
|
|
75
|
+
Each tool runs one Apify Actor on your account. Empty runs are not charged per result; every call is capped by `run_max_charge_usd`. Full schemas and prices: [umbrella README](https://github.com/pandadad0214/panda-federation-tools#domain-tool-lists).
|
|
76
|
+
|
|
77
|
+
## Sibling domain servers
|
|
78
|
+
|
|
79
|
+
- [`panda-public-funding-tools`](https://github.com/pandadad0214/panda-public-funding-tools) — US federal money, filings and safety monitors: grants, contracts, SBIR/STTR topics, SEC financials, clinical trials, Federal Register, recalls, VIN decode.
|
|
80
|
+
- [`panda-leads-tools`](https://github.com/pandadad0214/panda-leads-tools) — Public leads and enrichment: NPI providers, podcasts, local businesses, hiring signals, website enrichment, team pages, topic trends, trucking carriers, IRS nonprofits, building permits, new Florida, Texas and New York businesses, H-1B visa sponsors, EU tenders.
|
|
81
|
+
- [`panda-web-security-tools`](https://github.com/pandadad0214/panda-web-security-tools) — Site, email and agent safety: SPF/DKIM/DMARC audits, AI/SEO readiness, website change monitoring, hidden AI instructions scanner, bulk domain WHOIS/expiry, broken link checker.
|
|
82
|
+
|
|
83
|
+
Index / compatibility mega-server: [panda-federation-tools](https://github.com/pandadad0214/panda-federation-tools) (use only when you truly need every tool).
|
|
84
|
+
|
|
85
|
+
## TDQS standard
|
|
86
|
+
|
|
87
|
+
New tools join this domain only while the count stays in the 3–15 band. Descriptions follow the checklist in the umbrella repo. See [tdqs-standard](https://github.com/pandadad0214/panda-federation-tools) / project docs.
|
|
88
|
+
|
|
89
|
+
Built by Panda Federation. MIT licensed.
|
|
@@ -0,0 +1,56 @@
|
|
|
1
|
+
[build-system]
|
|
2
|
+
requires = ["hatchling==1.33.0"]
|
|
3
|
+
build-backend = "hatchling.build"
|
|
4
|
+
|
|
5
|
+
[project]
|
|
6
|
+
name = "panda-research-tools"
|
|
7
|
+
version = "0.1.0"
|
|
8
|
+
description = "Panda Research Tools: scholarly integrity and papers: citation checks, literature and PubMed search, academic experts, PDF tables, Wayback Machine snapshots."
|
|
9
|
+
readme = "README.md"
|
|
10
|
+
license = "MIT"
|
|
11
|
+
license-files = ["LICENSE"]
|
|
12
|
+
requires-python = ">=3.11"
|
|
13
|
+
authors = [{ name = "Panda Federation (pandadad0214)" }]
|
|
14
|
+
keywords = ["mcp", "mcp-server", "apify", "panda-federation", "research"]
|
|
15
|
+
classifiers = [
|
|
16
|
+
"Development Status :: 5 - Production/Stable",
|
|
17
|
+
"Intended Audience :: Developers",
|
|
18
|
+
"Programming Language :: Python :: 3",
|
|
19
|
+
"Programming Language :: Python :: 3 :: Only",
|
|
20
|
+
"Programming Language :: Python :: 3.11",
|
|
21
|
+
"Programming Language :: Python :: 3.12",
|
|
22
|
+
"Programming Language :: Python :: 3.13",
|
|
23
|
+
"Typing :: Typed",
|
|
24
|
+
]
|
|
25
|
+
dependencies = [
|
|
26
|
+
"panda-federation-tools>=1.7.0,<2",
|
|
27
|
+
]
|
|
28
|
+
|
|
29
|
+
[project.urls]
|
|
30
|
+
Homepage = "https://github.com/pandadad0214/panda-research-tools"
|
|
31
|
+
Source = "https://github.com/pandadad0214/panda-research-tools"
|
|
32
|
+
"Umbrella index" = "https://github.com/pandadad0214/panda-federation-tools"
|
|
33
|
+
"Apify Store" = "https://apify.com/pandadad0214"
|
|
34
|
+
|
|
35
|
+
[project.scripts]
|
|
36
|
+
panda-research-tools = "panda_research_tools.server:main"
|
|
37
|
+
|
|
38
|
+
[tool.hatch.build.targets.wheel]
|
|
39
|
+
packages = ["src/panda_research_tools"]
|
|
40
|
+
|
|
41
|
+
[dependency-groups]
|
|
42
|
+
dev = [
|
|
43
|
+
"ruff==0.17.3",
|
|
44
|
+
]
|
|
45
|
+
|
|
46
|
+
[tool.ruff]
|
|
47
|
+
line-length = 120
|
|
48
|
+
target-version = "py311"
|
|
49
|
+
|
|
50
|
+
[tool.ruff.lint]
|
|
51
|
+
select = ["E", "F", "W", "I", "B", "UP", "S", "SIM", "RUF"]
|
|
52
|
+
ignore = ["RUF001"]
|
|
53
|
+
|
|
54
|
+
[tool.ruff.lint.per-file-ignores]
|
|
55
|
+
"tests/*" = ["S101", "S105", "S106"]
|
|
56
|
+
"**/test_*.py" = ["S101", "S105", "S106"]
|
|
@@ -0,0 +1,19 @@
|
|
|
1
|
+
#!/usr/bin/env bash
|
|
2
|
+
# Run before committing (daily build routine). Autofixes then verifies clean.
|
|
3
|
+
set -euo pipefail
|
|
4
|
+
ROOT="$(cd "$(dirname "$0")/.." && pwd)"
|
|
5
|
+
cd "$ROOT"
|
|
6
|
+
RUFF_VER="${RUFF_VER:-0.17.3}"
|
|
7
|
+
|
|
8
|
+
if [[ -f uv.lock ]] && grep -q 'name = "ruff"' uv.lock; then
|
|
9
|
+
uv sync --frozen --all-groups
|
|
10
|
+
run_ruff() { uv run ruff "$@"; }
|
|
11
|
+
else
|
|
12
|
+
run_ruff() { uv run --with "ruff==${RUFF_VER}" ruff "$@"; }
|
|
13
|
+
fi
|
|
14
|
+
|
|
15
|
+
run_ruff check . --fix
|
|
16
|
+
run_ruff format .
|
|
17
|
+
run_ruff check .
|
|
18
|
+
run_ruff format --check .
|
|
19
|
+
echo "lint-fix: clean"
|
|
@@ -0,0 +1,33 @@
|
|
|
1
|
+
{
|
|
2
|
+
"$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
|
|
3
|
+
"name": "io.github.pandadad0214/panda-research-tools",
|
|
4
|
+
"title": "Panda Research Tools",
|
|
5
|
+
"description": "Scholarly integrity — citations, literature/PubMed, experts, PDF tables, Wayback (7 tools).",
|
|
6
|
+
"websiteUrl": "https://github.com/pandadad0214/panda-research-tools",
|
|
7
|
+
"repository": {
|
|
8
|
+
"url": "https://github.com/pandadad0214/panda-research-tools",
|
|
9
|
+
"source": "github",
|
|
10
|
+
"id": "1447663528"
|
|
11
|
+
},
|
|
12
|
+
"version": "0.1.0",
|
|
13
|
+
"packages": [
|
|
14
|
+
{
|
|
15
|
+
"registryType": "pypi",
|
|
16
|
+
"registryBaseUrl": "https://pypi.org",
|
|
17
|
+
"identifier": "panda-research-tools",
|
|
18
|
+
"version": "0.1.0",
|
|
19
|
+
"runtimeHint": "uvx",
|
|
20
|
+
"transport": {
|
|
21
|
+
"type": "stdio"
|
|
22
|
+
},
|
|
23
|
+
"environmentVariables": [
|
|
24
|
+
{
|
|
25
|
+
"name": "APIFY_TOKEN",
|
|
26
|
+
"description": "Apify API token. Free token: https://console.apify.com/settings/integrations",
|
|
27
|
+
"isRequired": true,
|
|
28
|
+
"isSecret": true
|
|
29
|
+
}
|
|
30
|
+
]
|
|
31
|
+
}
|
|
32
|
+
]
|
|
33
|
+
}
|