oxymetag 1.1.1__tar.gz → 1.1.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (37) hide show
  1. {oxymetag-1.1.1/oxymetag.egg-info → oxymetag-1.1.2}/PKG-INFO +1 -1
  2. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/__init__.py +1 -1
  3. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/scripts/predict_oxygen.R +1 -1
  4. {oxymetag-1.1.1 → oxymetag-1.1.2/oxymetag.egg-info}/PKG-INFO +1 -1
  5. {oxymetag-1.1.1 → oxymetag-1.1.2}/setup.py +1 -1
  6. {oxymetag-1.1.1 → oxymetag-1.1.2}/LICENSE +0 -0
  7. {oxymetag-1.1.1 → oxymetag-1.1.2}/MANIFEST.in +0 -0
  8. {oxymetag-1.1.1 → oxymetag-1.1.2}/README.md +0 -0
  9. {oxymetag-1.1.1 → oxymetag-1.1.2}/environment.yml +0 -0
  10. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/cli.py +0 -0
  11. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/core.py +0 -0
  12. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/.DS_Store +0 -0
  13. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/Oxygen_pfams.csv +0 -0
  14. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/VTML20.out +0 -0
  15. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/nucleotide.out +0 -0
  16. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxygen_model.rds +0 -0
  17. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams.dmnd +0 -0
  18. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams_n117.dmnd +0 -0
  19. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams_n117_db +0 -0
  20. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams_n117_db.dbtype +0 -0
  21. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams_n117_db.index +0 -0
  22. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams_n117_db.lookup +0 -0
  23. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams_n117_db.source +0 -0
  24. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams_n117_db_h +0 -0
  25. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams_n117_db_h.dbtype +0 -0
  26. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/oxymetag_pfams_n117_db_h.index +0 -0
  27. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/pfam_headers_table.txt +0 -0
  28. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/data/pfam_lengths.tsv +0 -0
  29. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/utils.py +0 -0
  30. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag.egg-info/SOURCES.txt +0 -0
  31. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag.egg-info/dependency_links.txt +0 -0
  32. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag.egg-info/entry_points.txt +0 -0
  33. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag.egg-info/requires.txt +0 -0
  34. {oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag.egg-info/top_level.txt +0 -0
  35. {oxymetag-1.1.1 → oxymetag-1.1.2}/requirements.txt +0 -0
  36. {oxymetag-1.1.1 → oxymetag-1.1.2}/setup.cfg +0 -0
  37. {oxymetag-1.1.1 → oxymetag-1.1.2}/tests/__init__.py +0 -0
{oxymetag-1.1.1/oxymetag.egg-info → oxymetag-1.1.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: oxymetag
3
- Version: 1.1.1
3
+ Version: 1.1.2
4
4
  Summary: Oxygen metabolism profiling from metagenomic data
5
5
  Home-page: https://github.com/cliffbueno/oxymetag
6
6
  Author: Clifton P. Bueno de Mesquita
{oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/__init__.py RENAMED
@@ -2,7 +2,7 @@
2
2
  OxyMetaG: Oxygen metabolism profiling from metagenomic data
3
3
  """
4
4
 
5
- __version__ = "1.1.1"
5
+ __version__ = "1.1.2"
6
6
  __author__ = "Clifton P. Bueno de Mesquita"
7
7
  __email__ = "cliff.buenodemesquita@colorado.edu"
8
8
 
{oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/scripts/predict_oxygen.R RENAMED
@@ -167,7 +167,7 @@ predict_oxygen <- function(input_dir, output_file, package_data_dir, mode, idcut
167
167
 
168
168
  gene.hit.length.correction <- gene.hits %>%
169
169
  left_join(pfam_gene_length, by = "Pfam") %>%
170
- mutate(RPK = total_count / (1000 * Gene.length)) %>%
170
+ mutate(RPK = total_count / (Gene.length/1000)) %>%
171
171
  left_join(oxygen_pfams, by = "Pfam")
172
172
 
173
173
  # Sum by oxygen type
{oxymetag-1.1.1 → oxymetag-1.1.2/oxymetag.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: oxymetag
3
- Version: 1.1.1
3
+ Version: 1.1.2
4
4
  Summary: Oxygen metabolism profiling from metagenomic data
5
5
  Home-page: https://github.com/cliffbueno/oxymetag
6
6
  Author: Clifton P. Bueno de Mesquita
{oxymetag-1.1.1 → oxymetag-1.1.2}/setup.py RENAMED
@@ -8,7 +8,7 @@ with open("requirements.txt", "r", encoding="utf-8") as fh:
8
8
 
9
9
  setup(
10
10
  name="oxymetag",
11
- version="1.1.1",
11
+ version="1.1.2",
12
12
  author="Clifton P. Bueno de Mesquita",
13
13
  author_email="cliff.buenodemesquita@colorado.edu",
14
14
  description="Oxygen metabolism profiling from metagenomic data",
{oxymetag-1.1.1 → oxymetag-1.1.2}/LICENSE RENAMED
File without changes
{oxymetag-1.1.1 → oxymetag-1.1.2}/MANIFEST.in RENAMED
File without changes
{oxymetag-1.1.1 → oxymetag-1.1.2}/README.md RENAMED
File without changes
{oxymetag-1.1.1 → oxymetag-1.1.2}/environment.yml RENAMED
File without changes
{oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/cli.py RENAMED
File without changes
{oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/core.py RENAMED
File without changes
{oxymetag-1.1.1 → oxymetag-1.1.2}/oxymetag/utils.py RENAMED
File without changes
{oxymetag-1.1.1 → oxymetag-1.1.2}/requirements.txt RENAMED
File without changes
{oxymetag-1.1.1 → oxymetag-1.1.2}/setup.cfg RENAMED
File without changes
{oxymetag-1.1.1 → oxymetag-1.1.2}/tests/__init__.py RENAMED
File without changes