otbench-tabular 0.1.0__tar.gz

otbench_tabular-0.1.0/.github/workflows/ci.yml

@@ -0,0 +1,25 @@
+name: Core and distributions
+on: [push, pull_request]
+jobs:
+  core:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+          cache: pip
+          cache-dependency-path: requirements/*.txt
+      - run: python -m pip install --upgrade pip setuptools wheel build
+      - run: python -m pip install -c requirements/constraints.txt -e '.[test]'
+      - run: python -m pytest -p no:cacheprovider -m 'not optional_backend and not optional_metric'
+        env:
+          PYTHONDONTWRITEBYTECODE: '1'
+      - run: python -m build --no-isolation
+      - run: python tests/check_release_artifacts.py dist
+      - name: Check wheel console entrypoint in a clean environment
+        run: |
+          python -m venv /tmp/otbench-wheel
+          /tmp/otbench-wheel/bin/python -m pip install -c requirements/constraints.txt dist/*.whl
+          cd /tmp
+          /tmp/otbench-wheel/bin/otbench --list-methods

otbench_tabular-0.1.0/.gitignore

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+__pycache__/
+*.py[cod]
+.pytest_cache/
+.venv/
+*.egg-info/
+build/
+dist/
+work/
+outputs/
+checkpoints/
+tabdata/store/
+tabdata/raw/
+
+# Locally acquired upstream source has no redistribution grant in this release.
+methods/card/model/*
+!methods/card/model/README.md
+methods/remasker/model/*
+!methods/remasker/model/README.md

otbench_tabular-0.1.0/CITATION.cff

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+cff-version: 1.2.0
+message: "If you use OTBench, cite this software record. Paper and contributor metadata await maintainer confirmation."
+type: software
+title: "OTBench: Tabular generation, imputation, and prediction benchmark"
+version: 0.2.0
+authors:
+  - name: "OTBench contributors"

otbench_tabular-0.1.0/CONTRIBUTING.md

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+# Contributing
+
+Use Python 3.12 and keep all runtime artifacts in a selected workspace. The core
+runs offline on synthetic fixtures and scikit-learn datasets; model backends,
+weights, and deployment checks are optional layers.
+
+## Architecture and adding a method
+
+The dependency direction is dataset/schema contracts → method contracts and
+registry → task runners → metric/artifact records. `methods/common/base.py` owns
+method contexts and outputs; `methods/common/registry.py` owns declared support.
+The shared CLI in `run.py` dispatches to the three task runners. The imputation
+grid is a separate execution strategy that keeps reusable conditional fits alive.
+
+To add a method, implement an adapter and `config.toml`, register its capabilities
+and upstream identity, declare optional imports in `methods/common/readiness.py`,
+and declare external resources in `methods/common/resources.py`. Preserve native
+output semantics and information access. Add contract tests through the real task
+path and an isolated tiny smoke budget; do not substitute a fallback algorithm.
+Regenerate `docs/methods.md` with:
+
+```bash
+python -m otbench.methods.common.readiness --format markdown > docs/methods.md
+```
+
+Keep comments focused on non-obvious behavior and protocol decisions. Document
+public arguments from their actual implementation and retain upstream attribution
+and license notices.
+
+## Validation layers
+
+```bash
+python -m pip install -c requirements/constraints.txt -e '.[test]' build wheel
+python -m pytest -p no:cacheprovider -m 'not optional_backend and not optional_metric'
+# After provisioning the selected optional backends and resources:
+python -m pytest -p no:cacheprovider tests
+```
+
+`optional_backend` covers real backend training/inference; `optional_metric`
+covers third-party metric parity and SCM tests. Missing packages/resources may
+skip. Installed backends that fail to import or execute must fail, so environment
+breakage remains visible. `readiness` does not catch backend exceptions.
+
+Build and inspect actual distributions before a release:
+
+```bash
+python -m build --no-isolation
+python tests/check_release_artifacts.py dist
+```
+
+[Artifact documentation](docs/artifacts.md) describes stored contracts and recovery.
+
+CI checks the core suite, the sdist support files, wheel resources, and a console
+entrypoint installed from the wheel into a fresh environment. Full GPU training,
+complete dataset reproduction, and real multi-node execution require separate
+runs on the intended deployment.
+
+## Licensing and release metadata
+
+Original OTBench contributions are submitted under the
+[Apache License 2.0](LICENSE.txt), unless a separate written
+agreement states otherwise. Submit only code you have permission to contribute.
+Keep third-party license texts and copyright notices, record source revisions and
+local modifications, and mark modified upstream files prominently. The root license
+does not replace third-party terms. Read [the licensing guide](docs/licensing.md)
+before redistributing a fork, product, service, or resulting model.
+
+Do not commit locally obtained CARD or ReMasker source: their upstream snapshots
+provided no redistribution license. Keep their exclusion notices and check that
+both the sdist and wheel contain no such implementation files. Apply the same rule
+to any new unlicensed component. Refer users to the original project and its terms.
+
+Keep the visible attribution **Built with StableAI LimiX**, ship the exact root
+license and all applicable notices, and preserve notices when modifying files.
+The release checker inspects the actual archives, not only the checkout. Its
+presence checks do not replace reviewing the source and terms of new dependencies.
+
+Contributor/citation metadata and the public repository URL still require real
+maintainer information. The citation file identifies this software without
+asserting an unpublished paper, DOI, repository URL, or release date.

otbench_tabular-0.1.0/LICENSE.txt

@@ -0,0 +1,202 @@
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otbench_tabular-0.1.0/MANIFEST.in

@@ -0,0 +1,10 @@
+include README.md CONTRIBUTING.md CITATION.cff LICENSE.txt NOTICE.md pytest.ini .gitignore
+recursive-include methods LICENSE* NOTICE* VENDOR.md constraints.txt
+recursive-include requirements *.txt
+recursive-include tests *.py
+recursive-include docs *.md *.json
+recursive-include .github *.yml *.yaml
+recursive-exclude * __pycache__ *.py[cod]
+recursive-exclude methods/card/model *
+recursive-exclude methods/remasker/model *
+include methods/card/model/README.md methods/remasker/model/README.md

otbench_tabular-0.1.0/NOTICE.md

@@ -0,0 +1,110 @@
+# OTBench notices
+
+**Built with StableAI LimiX**
+
+Copyright © 2026 Stable AI Technology Co., Ltd.
+Copyright © 2026 Wen Zhun (Xiong'an) Technology Co., Ltd.
+Copyright © 2026 稳准智能(雄安)科技有限公司
+
+These names identify the same copyright owner. Original OTBench code is distributed
+under the [Apache License 2.0](LICENSE.txt). See [the licensing guide](docs/licensing.md).
+
+The root license does not replace the licenses of third-party source, separately
+installed dependencies, datasets, or model weights. Retain the upstream notices
+and license texts beside their implementations. No datasets or pretrained weights
+are included. LimiX-2 weights have separate non-commercial terms.
+The bundled LimiX-2 code retains its own license in
+`methods/limix2/model/LICENSE.txt`, including its applicable attribution and model
+naming conditions. The visible attribution above is retained for that component.
+
+## Excluded upstream implementations
+
+The inspected CARD and ReMasker source snapshots did not supply redistribution
+licenses. Their implementation files are excluded; explanation files remain in
+`methods/card/model/README.md` and `methods/remasker/model/README.md`. Obtain any
+needed source directly from the original projects and check their current terms:
+
+- CARD: <https://github.com/XzwHan/CARD>
+- ReMasker: <https://github.com/tydusky/remasker>
+
+OTBench does not grant redistribution permission for those implementations.
+They are marked `external_only`; their placeholder adapters explain their
+unavailability. Locally obtained source must not be included in public packages.
+
+## Provenance and modifications
+
+The 2026-10-25 release update renames the project, Python package, imports, console
+command, scripts, and documentation to OTBench; adopts the root license; adds
+third-party license notices; and excludes the unlicensed CARD/ReMasker snapshots.
+Project integration changes do not replace the licenses of upstream source.
+
+OTBench adapters, contracts, and task integration are maintained separately from
+vendored implementations. Existing upstream copyright and license notices remain
+in place. Modified upstream files carry prominent local modification notices.
+The OTBench name identifies the benchmark; the attribution above describes the
+licensed lineage and does not imply upstream endorsement or affiliation.
+
+Upstream names, versions, URLs, and reported license labels are recorded in
+`methods/common/registry.py`. Labels in that registry are provenance claims from
+the inspected source snapshot; they are not substitutes for the upstream terms.
+A `pending` label identifies incomplete provenance, not permission to redistribute
+third-party code. External package dependencies are acquired separately under
+their own terms. Contributor/citation identities and the public repository URL
+remain unspecified rather than inferred.
+
+## Registry and bundled-notice inventory
+
+Generated with `python -m otbench.methods.common.readiness --format notices`.
+
+| Method | Registry license label | Upstream | Bundled notice paths |
+| --- | --- | --- | --- |
+| `arf` | Apache-2.0 wrapper; MIT external arfpy backend | [arfpy / synthcity wrapper](https://github.com/bips-hb/arfpy) | `methods/arf/LICENSE.synthcity`, `methods/arf/VENDOR.md` |
+| `bn` | Apache-2.0 wrapper; MIT external pgmpy backend | [pgmpy / synthcity bayesian_network](https://github.com/vanderschaarlab/synthcity) | `methods/bn/LICENSE.synthcity`, `methods/bn/VENDOR.md` |
+| `bn_original_units` | Apache-2.0 wrapper; MIT external pgmpy backend | [pgmpy / synthcity bayesian_network](https://github.com/vanderschaarlab/synthcity) | none in method directory |
+| `card` | not supplied in reviewed upstream source; not redistributed | [CARD](https://github.com/XzwHan/CARD) | `methods/card/VENDOR.md` |
+| `catboost` | Apache-2.0 | [CatBoost](https://github.com/catboost/catboost) | none in method directory |
+| `ctgan` | Apache-2.0 bundled implementation | [CTGAN (synthcity implementation)](https://github.com/vanderschaarlab/synthcity) | `methods/ctgan/LICENSE.synthcity`, `methods/ctgan/VENDOR.md` |
+| `diffputer` | MIT | [DiffPuter](https://github.com/hengruizhang98/DiffPuter) | `methods/diffputer/VENDOR.md`, `methods/diffputer/model/LICENSE` |
+| `forest_vp` | MIT | [ForestDiffusion](https://github.com/SamsungSAILMontreal/ForestDiffusion) | none in method directory |
+| `forest_vp_joint` | MIT | [ForestDiffusion](https://github.com/SamsungSAILMontreal/ForestDiffusion) | none in method directory |
+| `ft_transformer` | MIT | [rtdl_revisiting_models](https://github.com/yandex-research/rtdl-revisiting-models) | none in method directory |
+| `gaussian_copula` | Apache-2.0 | OTBench Gaussian-copula baseline | `methods/gaussian_copula/VENDOR.md` |
+| `goggle` | Apache-2.0 synthcity implementation; MIT GOGGLE project | [GOGGLE / synthcity](https://github.com/tennisonliu/GOGGLE) | `methods/goggle/LICENSE.GOGGLE`, `methods/goggle/LICENSE.synthcity`, `methods/goggle/VENDOR.md` |
+| `great` | Apache-2.0 wrapper; MIT external be-great backend | [be-great](https://github.com/tabularis-ai/be_great) | `methods/great/LICENSE.synthcity`, `methods/great/VENDOR.md` |
+| `hyperimpute` | MIT | [hyperimpute](https://github.com/vanderschaarlab/hyperimpute) | none in method directory |
+| `independent_marginal` | Apache-2.0 | OTBench diagnostic baseline | none in method directory |
+| `knn_imputer` | BSD-3-Clause | [scikit-learn KNNImputer](https://scikit-learn.org/stable/modules/generated/sklearn.impute.KNNImputer.html) | none in method directory |
+| `lightgbm` | MIT | [LightGBM](https://github.com/microsoft/LightGBM) | none in method directory |
+| `lightgbm_quantile` | MIT | [LightGBM objective='quantile'](https://lightgbm.readthedocs.io/en/latest/Parameters.html#objective) | none in method directory |
+| `limix` | Apache-2.0 | [LimiX](https://github.com/limix-ldm-ai/LimiX) | `methods/limix/LICENSE.txt` |
+| `limix2` | Stable AI Technology License v1.0 code; StableAI LimiX Non-Commercial License weights | [LimiX-2](https://github.com/limix-ldm-ai/LimiX) | `methods/limix2/model/LICENSE.txt` |
+| `linear_regression` | BSD-3-Clause | scikit-learn Ridge | none in method directory |
+| `logistic_regression` | BSD-3-Clause | scikit-learn LogisticRegression | none in method directory |
+| `mice` | pending | [MICE (van Buuren & Groothuis-Oudshoorn 2011)](https://www.jstatsoft.org/article/view/v045i03) | none in method directory |
+| `missforest` | pending | [MissForest](https://doi.org/10.1093/bioinformatics/btr597) | none in method directory |
+| `mlp` | BSD-3-Clause | scikit-learn MLP | none in method directory |
+| `nflow` | Apache-2.0 wrapper; separate external flow backends | [synthcity nflow](https://github.com/vanderschaarlab/synthcity) | `methods/nflow/LICENSE.synthcity`, `methods/nflow/VENDOR.md` |
+| `ngboost` | Apache-2.0 | [ngboost](https://github.com/stanfordmlgroup/ngboost) | none in method directory |
+| `nrgboost` | MIT backend; Apache-2.0 shared synth support | [NRGBoost](https://github.com/ajoo/nrgboost) | `methods/nrgboost/LICENSE.NRGBoost`, `methods/nrgboost/VENDOR.md` |
+| `random_forest` | BSD-3-Clause | scikit-learn ensemble | none in method directory |
+| `remasker` | not supplied in reviewed upstream source; not redistributed | [ReMasker](https://github.com/tydusky/remasker) | `methods/remasker/VENDOR.md` |
+| `scm` | MIT | [lingam](https://github.com/cdt15/lingam) | none in method directory |
+| `simple_mean_mode` | BSD-3-Clause | [scikit-learn SimpleImputer](https://scikit-learn.org/stable/modules/generated/sklearn.impute.SimpleImputer.html) | none in method directory |
+| `simple_median_mode` | BSD-3-Clause | [scikit-learn SimpleImputer](https://scikit-learn.org/stable/modules/generated/sklearn.impute.SimpleImputer.html) | none in method directory |
+| `smote` | MIT | [imbalanced-learn SMOTE](https://imbalanced-learn.org) | none in method directory |
+| `smotenc` | MIT | [imbalanced-learn SMOTENC](https://imbalanced-learn.org) | none in method directory |
+| `smoter` | pending | [SMOTER](https://doi.org/10.1007/978-3-642-40669-0_33) | none in method directory |
+| `tabcsdi` | MIT | [TabCSDI](https://github.com/pfnet-research/TabCSDI) | `methods/tabcsdi/VENDOR.md`, `methods/tabcsdi/model/LICENSE.md` |
+| `tabddpm` | MIT | [tab-ddpm](https://github.com/yandex-research/tab-ddpm) | `methods/tabddpm/LICENSE.md` |
+| `tabdiff` | MIT | [TabDiff](https://github.com/MinkaiXu/TabDiff) | `methods/tabdiff/LICENSE` |
+| `tabebm` | Apache-2.0 | [TabEBM](https://github.com/andreimargeloiu/TabEBM) | `methods/tabebm/LICENSE`, `methods/tabebm/VENDOR.md` |
+| `tabicl` | BSD-3-Clause | [tabicl](https://github.com/soda-inria/tabicl) | none in method directory |
+| `tabiclv2` | BSD-3-Clause | [TabICL v2 / TabICLUnsupervised](https://github.com/soda-inria/tabicl) | none in method directory |
+| `tabimpute` | not declared in package metadata | [TabImpute](https://github.com/jacobf18/tabular) | none in method directory |
+| `tabm` | MIT | [tabm](https://github.com/yandex-research/tabm) | none in method directory |
+| `tabpfn` | Apache-2.0 | [tabpfn](https://github.com/PriorLabs/TabPFN) | none in method directory |
+| `tabpfn_unsupervised` | Apache-2.0 code; tabpfn-3-license-v1.0 weights | [tabpfn-extensions unsupervised](https://github.com/PriorLabs/tabpfn-extensions) | none in method directory |
+| `tabsyn` | Apache-2.0 | [tabsyn](https://github.com/amazon-science/tabsyn) | `methods/tabsyn/LICENSE` |
+| `train_bootstrap` | Apache-2.0 | OTBench diagnostic baseline | none in method directory |
+| `tvae` | Apache-2.0 bundled implementation | [TVAE (synthcity implementation)](https://github.com/vanderschaarlab/synthcity) | `methods/tvae/LICENSE.synthcity`, `methods/tvae/VENDOR.md` |
+| `xgboost` | Apache-2.0 | [xgboost](https://github.com/dmlc/xgboost) | none in method directory |