osteoid 0.1.0__tar.gz

osteoid-0.1.0/LICENSE

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+BSD 3-Clause License
+
+Copyright (c) 2025, seung-lab
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

osteoid-0.1.0/PKG-INFO

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+Metadata-Version: 2.3
+Name: osteoid
+Version: 0.1.0
+Summary: Skeleton object used for representing neurons, adjacent cells, and organelles.
+License: BSD-3 Clause
+Author: William Silversmith
+Author-email: william.silversmith@gmail.com
+Requires-Python: >=3.9
+Classifier: License :: Other/Proprietary License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Dist: fastremap (>=1.15.1,<2.0.0)
+Requires-Dist: networkx (>=3.4.2,<4.0.0)
+Requires-Dist: numpy (>=2.2.3,<3.0.0)
+Description-Content-Type: text/markdown
+
+# osteoid
+Skeleton object used for representing neurons, adjacent cells, and organelles. 
+
+Represents a skeleton compatible with Neuroglancer.
+
+

osteoid-0.1.0/README.md

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+# osteoid
+Skeleton object used for representing neurons, adjacent cells, and organelles. 
+
+Represents a skeleton compatible with Neuroglancer.
+

osteoid-0.1.0/osteoid/__init__.py

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+from .skeleton import Skeleton
+from .util import save, load

osteoid-0.1.0/osteoid/exceptions.py

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+class SkeletonUnassignedEdgeError(Exception):
+  """This skeleton has an edge to a vertex that doesn't exist."""
+  pass
+
+class SkeletonDecodeError(Exception):
+  """Unable to decode a binary skeleton into a Python object."""
+  pass
+
+class SkeletonEncodeError(Exception):
+  """Unable to encode a PrecomputedSkeleton into a binary object."""
+  pass
+
+class SkeletonTransformError(Exception):
+  """Unable to apply a spatial transfrom to the current coordinate system."""
+  pass
+
+class SkeletonAttributeMixingError(Exception):
+  """
+  These skeletons have different vertex attributes 
+  and cannot be recombined without manual intervention.
+  """
+  pass