orbitize 3.2.1__tar.gz → 3.2.2__tar.gz

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Files changed (152) hide show
  1. {orbitize-3.2.1 → orbitize-3.2.2}/PKG-INFO +1 -1
  2. {orbitize-3.2.1 → orbitize-3.2.2}/docs/index.rst +3 -0
  3. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/Using_nonOrbitize_Posteriors_as_Priors.ipynb +4 -4
  4. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/__init__.py +1 -1
  5. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/_kepler.c +152 -152
  6. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/rebound_1planet.csv +31 -31
  7. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/rebound_2planet_inner.csv +25 -25
  8. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/rebound_2planet_outer.csv +25 -25
  9. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/rebound_2planet_swapped_outer.csv +26 -26
  10. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/test_mcmc.hdf5 +0 -0
  11. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/test_mcmc_v1.hdf5 +0 -0
  12. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/hipparcos.py +1 -1
  13. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/priors.py +2 -2
  14. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/read_input.py +1 -1
  15. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/results.py +5 -1
  16. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/system.py +7 -1
  17. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize.egg-info/PKG-INFO +1 -1
  18. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize.egg-info/SOURCES.txt +0 -1
  19. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_OFTI.py +2 -2
  20. orbitize-3.2.1/docs/tutorials/show-me-the-orbit.ipynb +0 -384
  21. {orbitize-3.2.1 → orbitize-3.2.2}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
  22. {orbitize-3.2.1 → orbitize-3.2.2}/.github/ISSUE_TEMPLATE/feature_request.md +0 -0
  23. {orbitize-3.2.1 → orbitize-3.2.2}/.github/workflows/python-package.yml +0 -0
  24. {orbitize-3.2.1 → orbitize-3.2.2}/.github/workflows/run-notebooks.yml +0 -0
  25. {orbitize-3.2.1 → orbitize-3.2.2}/.gitignore +0 -0
  26. {orbitize-3.2.1 → orbitize-3.2.2}/.readthedocs.yaml +0 -0
  27. {orbitize-3.2.1 → orbitize-3.2.2}/LICENSE +0 -0
  28. {orbitize-3.2.1 → orbitize-3.2.2}/MANIFEST.in +0 -0
  29. {orbitize-3.2.1 → orbitize-3.2.2}/README.md +0 -0
  30. {orbitize-3.2.1 → orbitize-3.2.2}/contributor_guidelines.md +0 -0
  31. {orbitize-3.2.1 → orbitize-3.2.2}/contributors.txt +0 -0
  32. {orbitize-3.2.1 → orbitize-3.2.2}/docs/Makefile +0 -0
  33. {orbitize-3.2.1 → orbitize-3.2.2}/docs/api.rst +0 -0
  34. {orbitize-3.2.1 → orbitize-3.2.2}/docs/basis.rst +0 -0
  35. {orbitize-3.2.1 → orbitize-3.2.2}/docs/conf.py +0 -0
  36. {orbitize-3.2.1 → orbitize-3.2.2}/docs/contributing.rst +0 -0
  37. {orbitize-3.2.1 → orbitize-3.2.2}/docs/driver.rst +0 -0
  38. {orbitize-3.2.1 → orbitize-3.2.2}/docs/faq/Orientation_Of_Orbit.ipynb +0 -0
  39. {orbitize-3.2.1 → orbitize-3.2.2}/docs/faq/Time_Of_Periastron.ipynb +0 -0
  40. {orbitize-3.2.1 → orbitize-3.2.2}/docs/faq.rst +0 -0
  41. {orbitize-3.2.1 → orbitize-3.2.2}/docs/favicon.ico +0 -0
  42. {orbitize-3.2.1 → orbitize-3.2.2}/docs/formatting_inputs.rst +0 -0
  43. {orbitize-3.2.1 → orbitize-3.2.2}/docs/gaia.rst +0 -0
  44. {orbitize-3.2.1 → orbitize-3.2.2}/docs/hipparcos.rst +0 -0
  45. {orbitize-3.2.1 → orbitize-3.2.2}/docs/installation.rst +0 -0
  46. {orbitize-3.2.1 → orbitize-3.2.2}/docs/kepler.rst +0 -0
  47. {orbitize-3.2.1 → orbitize-3.2.2}/docs/lnlike.rst +0 -0
  48. {orbitize-3.2.1 → orbitize-3.2.2}/docs/make.bat +0 -0
  49. {orbitize-3.2.1 → orbitize-3.2.2}/docs/manual.rst +0 -0
  50. {orbitize-3.2.1 → orbitize-3.2.2}/docs/nbody.rst +0 -0
  51. {orbitize-3.2.1 → orbitize-3.2.2}/docs/orbitize_logo_500.png +0 -0
  52. {orbitize-3.2.1 → orbitize-3.2.2}/docs/plot.rst +0 -0
  53. {orbitize-3.2.1 → orbitize-3.2.2}/docs/priors.rst +0 -0
  54. {orbitize-3.2.1 → orbitize-3.2.2}/docs/read_input.rst +0 -0
  55. {orbitize-3.2.1 → orbitize-3.2.2}/docs/requirements.txt +0 -0
  56. {orbitize-3.2.1 → orbitize-3.2.2}/docs/results.rst +0 -0
  57. {orbitize-3.2.1 → orbitize-3.2.2}/docs/sampler.rst +0 -0
  58. {orbitize-3.2.1 → orbitize-3.2.2}/docs/system.rst +0 -0
  59. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/Changing_bases_tutorial.ipynb +0 -0
  60. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/HGCA_tutorial.ipynb +0 -0
  61. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/Hipparcos_IAD.ipynb +0 -0
  62. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/MCMC_tutorial.ipynb +0 -0
  63. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/MCMC_vs_OFTI.ipynb +0 -0
  64. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/Modifying_MCMC_initial_positions.ipynb +0 -0
  65. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/Modifying_Priors.ipynb +0 -0
  66. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/Multiplanet_Tutorial.ipynb +0 -0
  67. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/OFTI_tutorial.ipynb +0 -0
  68. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/ONeil-ObsPriors.ipynb +0 -0
  69. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/Plotting_tutorial.ipynb +0 -0
  70. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/Quick-Start.ipynb +0 -0
  71. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/RV_MCMC_Tutorial.ipynb +0 -0
  72. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/abs_astrometry.ipynb +0 -0
  73. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/dynesty_tutorial.ipynb +0 -0
  74. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/eift_hd206893.png +0 -0
  75. {orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials.rst +0 -0
  76. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/_kepler.pyx +0 -0
  77. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/basis.py +0 -0
  78. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/driver.py +0 -0
  79. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/GJ504.csv +0 -0
  80. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/GJ504_1epoch.csv +0 -0
  81. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/H000025.d +0 -0
  82. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/H000026.d +0 -0
  83. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/H027321.d +0 -0
  84. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/H027989.d +0 -0
  85. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/HD4747.csv +0 -0
  86. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/HGCA_vEDR3.fits +0 -0
  87. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/HIP027321.d +0 -0
  88. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/HR7672_joint.csv +0 -0
  89. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/betaPic.csv +0 -0
  90. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/gaia_edr3_betpic_epochs.csv +0 -0
  91. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/hd206893b.csv +0 -0
  92. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/old_orbitize_format.csv +0 -0
  93. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/rebound_2planet.csv +0 -0
  94. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/sample_radvel_chains.csv.bz2 +0 -0
  95. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/test_val.csv +0 -0
  96. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/test_val_cov.csv +0 -0
  97. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/test_val_multi.csv +0 -0
  98. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/test_val_radec.csv +0 -0
  99. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/test_val_rv.csv +0 -0
  100. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/v1_posterior.hdf5 +0 -0
  101. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/example_data/xyz_test_data.csv +0 -0
  102. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/gaia.py +0 -0
  103. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/gpu_context.py +0 -0
  104. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/kepler.c +0 -0
  105. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/kepler.py +0 -0
  106. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/kernels/mikkola.cu +0 -0
  107. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/kernels/newton.cu +0 -0
  108. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/lnlike.py +0 -0
  109. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/nbody.py +0 -0
  110. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/plot.py +0 -0
  111. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/radvel_utils/compute_sep.py +0 -0
  112. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize/sampler.py +0 -0
  113. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize.egg-info/dependency_links.txt +0 -0
  114. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize.egg-info/requires.txt +0 -0
  115. {orbitize-3.2.1 → orbitize-3.2.2}/orbitize.egg-info/top_level.txt +0 -0
  116. {orbitize-3.2.1 → orbitize-3.2.2}/pyproject.toml +0 -0
  117. {orbitize-3.2.1 → orbitize-3.2.2}/requirements.txt +0 -0
  118. {orbitize-3.2.1 → orbitize-3.2.2}/setup.cfg +0 -0
  119. {orbitize-3.2.1 → orbitize-3.2.2}/setup.py +0 -0
  120. {orbitize-3.2.1 → orbitize-3.2.2}/tests/__init__.py +0 -0
  121. {orbitize-3.2.1 → orbitize-3.2.2}/tests/conftest.py +0 -0
  122. {orbitize-3.2.1 → orbitize-3.2.2}/tests/end-to-end-tests/betaPic_hipIAD.py +0 -0
  123. {orbitize-3.2.1 → orbitize-3.2.2}/tests/end-to-end-tests/hr8799e_1epochgravity.csv +0 -0
  124. {orbitize-3.2.1 → orbitize-3.2.2}/tests/end-to-end-tests/hr8799e_only.py +0 -0
  125. {orbitize-3.2.1 → orbitize-3.2.2}/tests/end-to-end-tests/nested_test.py +0 -0
  126. {orbitize-3.2.1 → orbitize-3.2.2}/tests/end-to-end-tests/rv_end_to_end.py +0 -0
  127. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_abs_astrometry.py +0 -0
  128. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_additional_plotting.py +0 -0
  129. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_api.py +0 -0
  130. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_basis_conversions.py +0 -0
  131. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_basis_with_system.py +0 -0
  132. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_checkpriorsupport.py +0 -0
  133. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_chi2_lnlike.py +0 -0
  134. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_chop_chains_with_plotting.py +0 -0
  135. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_conversions.py +0 -0
  136. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_driver.py +0 -0
  137. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_gaia.py +0 -0
  138. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_hipparcos.py +0 -0
  139. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_kde_and_ndinterpolator.py +0 -0
  140. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_kepler_solver.py +0 -0
  141. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_mcmc.py +0 -0
  142. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_mcmc_rv.py +0 -0
  143. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_multiplanet.py +0 -0
  144. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_multiplanet_rebound.py +0 -0
  145. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_nested_sampler.py +0 -0
  146. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_priors.py +0 -0
  147. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_read_input.py +0 -0
  148. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_rebound.py +0 -0
  149. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_results.py +0 -0
  150. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_rv_plotting.py +0 -0
  151. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_secondary_rvs.py +0 -0
  152. {orbitize-3.2.1 → orbitize-3.2.2}/tests/test_system.py +0 -0
{orbitize-3.2.1 → orbitize-3.2.2}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: orbitize
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- Version: 3.2.1
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+ Version: 3.2.2
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  License-File: LICENSE
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  Requires-Dist: numpy
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  Requires-Dist: astropy>=4
{orbitize-3.2.1 → orbitize-3.2.2}/docs/index.rst RENAMED
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  Changelog:
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  ++++++++++
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+ **3.2.2 (2026-4-12)**
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+
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+ - fix a few bugs causing unit test failures (#400) (@sblunt)
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  **3.2.1 (2026-1-18)**
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{orbitize-3.2.1 → orbitize-3.2.2}/docs/tutorials/Using_nonOrbitize_Posteriors_as_Priors.ipynb RENAMED
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  " np.mean(tau_prior),\n",
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  " np.mean(m1_prior),\n",
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  " ]\n",
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- " )\n",
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  " lnprior_arr2[idx_prior] = kde2.logpdf(\n",
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  " [\n",
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  " sma,\n",
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  " np.mean(tau_prior),\n",
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  " np.mean(m1_prior),\n",
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  " ]\n",
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  "\n",
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  "plt.figure(100)\n",
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  "plt.plot(sma_arr, lnprior_arr1, label=\"KDE BW = Default\")\n",
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  " np.mean(tau_prior),\n",
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  " np.mean(m1_prior),\n",
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  "\n",
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  " # Quarentiles comparison\n",
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  " masskde_arr = kde.resample(len_pdf)[5, :]\n",
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  },
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  "nbformat": 4,
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  "nbformat_minor": 2
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- }
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{orbitize-3.2.1 → orbitize-3.2.2}/orbitize/__init__.py RENAMED
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  import os
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  # set Python env variable to keep track of example data dir
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  orbitize_dir = os.path.dirname(__file__)