orGUI 1.3.0__tar.gz → 1.4.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (158) hide show
  1. orgui-1.4.0/.gitignore +38 -0
  2. orgui-1.4.0/CHANGELOG.md +594 -0
  3. {orgui-1.3.0 → orgui-1.4.0}/PKG-INFO +3 -1
  4. orgui-1.4.0/benchmarks/benchmark.ipynb +652 -0
  5. orgui-1.4.0/benchmarks/benchmark.json +283 -0
  6. orgui-1.4.0/benchmarks/benchmark_compression.py +191 -0
  7. orgui-1.4.0/cliff.toml +159 -0
  8. orgui-1.4.0/examples/automatic_rocking_extraction.py +91 -0
  9. orgui-1.4.0/examples/backend/CHESS_QM2.py +437 -0
  10. orgui-1.4.0/examples/backend/P212_backend.py +283 -0
  11. orgui-1.4.0/examples/batch_processing/batch_integrate.py +51 -0
  12. orgui-1.4.0/examples/config_minimal +50 -0
  13. orgui-1.4.0/examples/config_withPoni_backendfile +61 -0
  14. orgui-1.4.0/examples/config_withPoni_noXtal +54 -0
  15. orgui-1.4.0/examples/config_withPoni_withBulfile +58 -0
  16. orgui-1.4.0/examples/config_withPoni_withCiffile +61 -0
  17. orgui-1.4.0/examples/config_withPoni_withXtalfile +60 -0
  18. orgui-1.4.0/examples/crystal_files/Pt100_with_surface_model.xtal +23 -0
  19. orgui-1.4.0/examples/crystal_files/Pt_mp-126_symmetrized.cif +218 -0
  20. orgui-1.4.0/examples/poni_files/P3_100_calib.poni +12 -0
  21. orgui-1.4.0/examples/poni_files/README.txt +1 -0
  22. orgui-1.4.0/examples/poni_files/poni.poni +12 -0
  23. orgui-1.4.0/examples/poni_files/poni_example.poni +12 -0
  24. orgui-1.4.0/hdf_locking_tests/data/proposal_sample.h5 +0 -0
  25. orgui-1.4.0/hdf_locking_tests/data/sample_0001/sample_0001.h5 +0 -0
  26. orgui-1.4.0/hdf_locking_tests/data/sample_0001/scan_0001/p3_0000.h5 +0 -0
  27. orgui-1.4.0/hdf_locking_tests/orgui_h5open_test.ipynb +203 -0
  28. orgui-1.4.0/hdf_locking_tests/test_locking.h5 +0 -0
  29. {orgui-1.3.0 → orgui-1.4.0}/orGUI.egg-info/PKG-INFO +3 -1
  30. {orgui-1.3.0 → orgui-1.4.0}/orGUI.egg-info/SOURCES.txt +40 -0
  31. {orgui-1.3.0 → orgui-1.4.0}/orGUI.egg-info/requires.txt +2 -0
  32. {orgui-1.3.0 → orgui-1.4.0}/orgui/__init__.py +5 -1
  33. orgui-1.4.0/orgui/_version.py +34 -0
  34. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/QReflectionSelector.py +487 -15
  35. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/QScanSelector.py +322 -27
  36. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/QUBCalculator.py +52 -28
  37. orgui-1.4.0/orgui/app/ROIutils.py +149 -0
  38. orgui-1.4.0/orgui/app/_roi_sum_accel.py +187 -0
  39. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/database.py +135 -23
  40. orgui-1.4.0/orgui/app/imagePeakFinder.py +187 -0
  41. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/orGUI.py +1287 -233
  42. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/peak1Dintegr.py +245 -60
  43. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/backends.py +23 -1
  44. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/beamline/id31_tools.py +8 -2
  45. orgui-1.4.0/orgui/backend/interlacedScanLoader.py +138 -0
  46. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/scans.py +1 -1
  47. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/CTRcalc.py +4 -3
  48. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/CTRplotutil.py +101 -0
  49. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/CTRuc.py +38 -26
  50. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/DetectorCalibration.py +1 -1
  51. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/ReciprocalNavigation.py +1 -1
  52. orgui-1.4.0/orgui/datautils/xrayutils/test/testdata/0V12_calculated.dat +4001 -0
  53. orgui-1.4.0/orgui/datautils/xrayutils/test/testdata/0V12_calculated.xpr +26 -0
  54. orgui-1.4.0/orgui/datautils/xrayutils/unitcells/Fe3O4(100).bul +59 -0
  55. orgui-1.4.0/orgui/datautils/xrayutils/unitcells/Pt100.bul +7 -0
  56. orgui-1.4.0/orgui/resources/icons/logo_social_media.png +0 -0
  57. orgui-1.4.0/orgui/resources/icons/logo_social_media.svg +852 -0
  58. orgui-1.4.0/orgui/resources/icons/search-peak.png +0 -0
  59. orgui-1.4.0/orgui/resources/icons/search-peak.svg +138 -0
  60. {orgui-1.3.0 → orgui-1.4.0}/pyproject.toml +7 -7
  61. orgui-1.4.0/requirements.txt +11 -0
  62. orgui-1.3.0/orgui/app/_roi_sum_accel.py +0 -69
  63. {orgui-1.3.0 → orgui-1.4.0}/LICENSE +0 -0
  64. {orgui-1.3.0 → orgui-1.4.0}/README.rst +0 -0
  65. {orgui-1.3.0/orgui/datautils/xrayutils/unitcells → orgui-1.4.0/examples/crystal_files}/Fe3O4(100).bul +0 -0
  66. {orgui-1.3.0/orgui/datautils/xrayutils/unitcells → orgui-1.4.0/examples/crystal_files}/Pt100.bul +0 -0
  67. {orgui-1.3.0 → orgui-1.4.0}/orGUI.egg-info/dependency_links.txt +0 -0
  68. {orgui-1.3.0 → orgui-1.4.0}/orGUI.egg-info/entry_points.txt +0 -0
  69. {orgui-1.3.0 → orgui-1.4.0}/orGUI.egg-info/top_level.txt +0 -0
  70. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/ArrayTableDialog.py +0 -0
  71. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/QHKLDialog.py +0 -0
  72. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/__init__.py +0 -0
  73. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/bgroi.py +0 -0
  74. {orgui-1.3.0 → orgui-1.4.0}/orgui/app/qutils.py +0 -0
  75. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/__init__.py +0 -0
  76. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/beamline/ID31DiffractLinTilt.py +0 -0
  77. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/beamline/P212_tools.py +0 -0
  78. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/beamline/__init__.py +0 -0
  79. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/beamline/fio_reader.py +0 -0
  80. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/udefaults.py +0 -0
  81. {orgui-1.3.0 → orgui-1.4.0}/orgui/backend/universalScanLoader.py +0 -0
  82. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/__init__.py +0 -0
  83. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/util.py +0 -0
  84. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/CTRfilm.py +0 -0
  85. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/CTRopt.py +0 -0
  86. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/CTRutil.py +0 -0
  87. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/HKLVlieg.py +0 -0
  88. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/_CTRcalc_accel.py +0 -0
  89. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/__init__.py +0 -0
  90. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/element_data.py +0 -0
  91. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/test/__init__.py +0 -0
  92. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/test/test_CTRcalc.py +0 -0
  93. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/test/test_DetectorCalibration.py +0 -0
  94. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/test/test_HKLcalc.py +0 -0
  95. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/Pt100_small.bul +0 -0
  96. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/Pt110.bul +0 -0
  97. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/Pt111.bul +0 -0
  98. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/Pt310.bul +0 -0
  99. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/Pt3O4(100).bul +0 -0
  100. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/PtO(001).bul +0 -0
  101. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/PtO(010).bul +0 -0
  102. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/PtO(100).bul +0 -0
  103. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/__init__.py +0 -0
  104. {orgui-1.3.0 → orgui-1.4.0}/orgui/datautils/xrayutils/unitcells/a-PtO2(0001).bul +0 -0
  105. {orgui-1.3.0 → orgui-1.4.0}/orgui/main.py +0 -0
  106. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/__init__.py +0 -0
  107. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/alpha.png +0 -0
  108. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/alpha.svg +0 -0
  109. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/anchor-ROI.png +0 -0
  110. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/anchor-ROI.svg +0 -0
  111. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/diffractometer_v3.png +0 -0
  112. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/disable-image.png +0 -0
  113. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/disable-image.svg +0 -0
  114. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/document-nx-new.png +0 -0
  115. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/document-nx-new.svg +0 -0
  116. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/document-nx-open.png +0 -0
  117. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/document-nx-open.svg +0 -0
  118. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/document-nx-save.png +0 -0
  119. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/document-nx-save.svg +0 -0
  120. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/incident_corrections.png +0 -0
  121. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/incident_corrections.svg +0 -0
  122. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/intersect_s1.png +0 -0
  123. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/intersect_s1.svg +0 -0
  124. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/intersect_s2.png +0 -0
  125. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/intersect_s2.svg +0 -0
  126. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/lattice-all-link.png +0 -0
  127. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/lattice-all-link.svg +0 -0
  128. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/lattice-horizontal-link.png +0 -0
  129. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/lattice-horizontal-link.svg +0 -0
  130. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/lattice-no-link.png +0 -0
  131. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/lattice-no-link.svg +0 -0
  132. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/lattice-view.png +0 -0
  133. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/lattice-view.svg +0 -0
  134. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/logo.png +0 -0
  135. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/logo.svg +0 -0
  136. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/logo_v1.png +0 -0
  137. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/logo_v1.svg +0 -0
  138. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/max_image.png +0 -0
  139. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/max_image.svg +0 -0
  140. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/max_image2.png +0 -0
  141. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/max_image2.svg +0 -0
  142. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/orguiicon.png +0 -0
  143. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/orguiicon.svg +0 -0
  144. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/search-image.png +0 -0
  145. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/search-image.svg +0 -0
  146. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/search-reflection.png +0 -0
  147. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/search-reflection.svg +0 -0
  148. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/search.png +0 -0
  149. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/search.svg +0 -0
  150. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/select-image.png +0 -0
  151. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/select-image.svg +0 -0
  152. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/set-reflection.png +0 -0
  153. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/set-reflection.svg +0 -0
  154. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/sum_image.png +0 -0
  155. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/sum_image.svg +0 -0
  156. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/sum_image2.png +0 -0
  157. {orgui-1.3.0 → orgui-1.4.0}/orgui/resources/icons/sum_image2.svg +0 -0
  158. {orgui-1.3.0 → orgui-1.4.0}/setup.cfg +0 -0
orgui-1.4.0/.gitignore ADDED
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+ # Compiled source #
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+ ###################
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+ *.com
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+ *.class
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+ *.dll
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+ *.exe
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+ *.o
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+ *.so
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+ *.py[cod]
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+ __pycache__/
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+ dist/
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+ build/
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+ orgui.egg-info/
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+ orgui/_version.py
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+
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+ # Packages #
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+ ############
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+ # it's better to unpack these files and commit the raw source
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+ # git has its own built in compression methods
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+ *.7z
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+ *.dmg
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+ *.gz
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+ *.iso
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+ *.jar
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+ *.rar
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+ *.tar
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+ *.zip
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+
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+ # OS generated files #
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+ ######################
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+ .DS_Store
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+ .DS_Store?
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+ ._*
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+ .Spotlight-V100
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+ .Trashes
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+ ehthumbs.db
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+ Thumbs.db
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+ .vs/