ophyd-async 0.8.0a4__tar.gz → 0.8.0a6__tar.gz

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ophyd-async
-Version: 0.8.0a4
+Version: 0.8.0a6
 Summary: Asynchronous Bluesky hardware abstraction code, compatible with control systems like EPICS and Tango
 Author-email: Tom Cobb <tom.cobb@diamond.ac.uk>
 License: BSD 3-Clause License

ophyd_async-0.8.0a6/docs/how-to/use_set_and_wait_for_other_value.md

@@ -0,0 +1,45 @@
+# `set_and_wait_for_other_value`
+
+The `set_and_wait_for_other_value` function (defined in `_signal.py`) is a utility designed to:
+
+1. **Set a signal**.
+2. **Wait for another signal to reach a specified value (`match_value`)**.
+
+The behavior of the function depends on the value of the `wait_for_set_completion` parameter:  
+
+- **If `wait_for_set_completion = True`:**  
+  The function returns at **1** (see diagram below), which occurs when the "set operation" is complete.  
+
+- **If `wait_for_set_completion = False`:**  
+  The function returns at **2**, which occurs when the `match_signal` reaches the `match_value`.
+
+In **AreaDetector**, the `wait_for_set_completion` parameter should generally be set to **`False`**, as the preferred behavior is to return when the `match_signal` achieves the `match_value`.
+
+---
+
+## Behavior Diagram:
+
+![wait_for_set_completion](../images/set_and_wait_for_other_value.svg)
+
+---
+
+## Example Usage
+
+```python
+# Example code snippet for using set_and_wait_for_other_value in an AreaDetector driver
+self._arm_status = set_and_wait_for_other_value(
+    self._drv.arm,
+    1,
+    self._drv.state,
+    "ready",
+    timeout=DEFAULT_TIMEOUT,
+    wait_for_set_completion=False,
+)
+```
+
+In this **AreaDetector driver**, the function ensures that the detector's `arm_status` reaches `"ready"` before capturing data. To achieve this:  
+
+- The detector is instructed to transition to the "armed" state by setting the driver's `arm` signal to `1`.  
+- The function waits until the driver's `state` signal equals `"ready"`.  
+
+This approach ensures that data capture is only initiated once the detector is fully prepared.

ophyd_async-0.8.0a6/docs/images/set_and_wait_for_other_value.svg

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stroke-width="2" fill="none"></path></g></g><mask></mask><g stroke-linecap="round"><g transform="translate(460.1152080592056 380.14595635678495) rotate(0 105.3841161725918 -1.1907809737016066)"><path d="M0.98 -0.93 C36.1 -1.01, 176.54 -1, 211.51 -1.27 M0.04 1.2 C34.99 0.88, 175.96 -2.39, 210.95 -2.82" stroke="#1e1e1e" stroke-width="2" fill="none"></path></g></g><mask></mask><g stroke-linecap="round"><g transform="translate(669.6926594306876 376.57361343568016) rotate(0 0.5953904868507607 82.75927767226133)"><path d="M-0.99 -0.41 C-0.54 27.2, 1.55 136.9, 1.72 164.64 M0.7 -1.68 C1.12 26.16, 0.78 138.12, 1.04 165.72" stroke="#1e1e1e" stroke-width="2" fill="none"></path></g></g><mask></mask><g stroke-linecap="round"><g transform="translate(672.0742213780909 542.0921687802029) rotate(0 191.12034627910714 -2.976952434253974)"><path d="M0.95 0.4 C64.42 -0.86, 317.63 -5.42, 381.15 -6.62 M0 -0.44 C63.78 -1.63, 319.76 -4.51, 383.29 -5.43" stroke="#1e1e1e" stroke-width="2" fill="none"></path></g></g><mask></mask><g stroke-linecap="round"><g transform="translate(672.1152080592055 548.1907594909206) rotate(0 0.5953904868508175 65.49295355358805)"><path d="M-0.92 1.14 C-0.95 23.33, -0.16 110.39, 0.31 131.92 M0.8 0.7 C1.09 22.66, 2.45 108.52, 2.56 130.29" stroke="#1e1e1e" stroke-width="2" fill="none"></path></g><g transform="translate(672.1152080592055 548.1907594909206) rotate(0 0.5953904868508175 65.49295355358805)"><path d="M-6.25 106.9 C-1.55 113.53, 1.13 124.19, 2.56 130.29 M-6.25 106.9 C-4.64 113.13, -2.21 118.07, 2.56 130.29" stroke="#1e1e1e" stroke-width="2" fill="none"></path></g><g transform="translate(672.1152080592055 548.1907594909206) rotate(0 0.5953904868508175 65.49295355358805)"><path d="M10.85 106.7 C9.68 113.27, 6.5 123.99, 2.56 130.29 M10.85 106.7 C8.22 113.14, 6.41 118.12, 2.56 130.29" stroke="#1e1e1e" stroke-width="2" fill="none"></path></g></g><mask></mask><g transform="translate(616.1485022952302 694.6568192562175) rotate(0 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text-anchor="start" style="white-space: pre;" direction="ltr" dominant-baseline="alphabetic">wait_for_set_completion= True</text></g><g transform="translate(521.8463297153439 749.5838303364346) rotate(0 160.32291666666663 12.5)"><text x="0" y="17.619999999999997" font-family="Excalifont, Xiaolai, Segoe UI Emoji" font-size="20px" fill="#1e1e1e" text-anchor="start" style="white-space: pre;" direction="ltr" dominant-baseline="alphabetic">wait_for_set_completion = False</text></g><g transform="translate(20.535767711378583 514.1120161220821) rotate(0 59.5625 12.5)"><text x="0" y="17.619999999999997" font-family="Excalifont, Xiaolai, Segoe UI Emoji" font-size="20px" fill="#1e1e1e" text-anchor="start" style="white-space: pre;" direction="ltr" dominant-baseline="alphabetic">match signal</text></g><g transform="translate(957.8616550664754 651.6440183607504) rotate(0 7.677083492279053 22.5)"><text x="0" y="31.716" font-family="Excalifont, Xiaolai, Segoe UI Emoji" font-size="36px" fill="#e03131" text-anchor="start" style="white-space: pre;" direction="ltr" dominant-baseline="alphabetic">1</text></g><g transform="translate(691.1677036384312 638.6901134922423) rotate(0 12.583333015441895 22.5)"><text x="0" y="31.716" font-family="Excalifont, Xiaolai, Segoe UI Emoji" font-size="36px" fill="#e03131" text-anchor="start" style="white-space: pre;" direction="ltr" dominant-baseline="alphabetic">2</text></g></svg>

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.8.0a4'
+__version__ = version = '0.8.0a6'
 __version_tuple__ = version_tuple = (0, 8, 0)

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/core/__init__.py

@@ -61,6 +61,7 @@ from ._signal import (
     assert_emitted,
     assert_reading,
     assert_value,
+    observe_signals_value,
     observe_value,
     set_and_wait_for_other_value,
     set_and_wait_for_value,
@@ -158,6 +159,7 @@ __all__ = [
     "assert_reading",
     "assert_value",
     "observe_value",
+    "observe_signals_value",
     "set_and_wait_for_value",
     "set_and_wait_for_other_value",
     "soft_signal_r_and_setter",

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/core/_device.py

@@ -37,8 +37,14 @@ class DeviceConnector:
 
     async def connect_mock(self, device: Device, mock: LazyMock):
         # Connect serially, no errors to gather up as in mock mode
+        exceptions: dict[str, Exception] = {}
         for name, child_device in device.children():
-            await child_device.connect(mock=mock.child(name))
+            try:
+                await child_device.connect(mock=mock.child(name))
+            except Exception as e:
+                exceptions[name] = e
+        if exceptions:
+            raise NotConnected.with_other_exceptions_logged(exceptions)
 
     async def connect_real(self, device: Device, timeout: float, force_reconnect: bool):
         """Used during ``Device.connect``.
@@ -193,7 +199,8 @@ class DeviceVector(MutableMapping[int, DeviceT], Device):
         children: Mapping[int, DeviceT],
         name: str = "",
     ) -> None:
-        self._children = dict(children)
+        self._children: dict[int, DeviceT] = {}
+        self.update(children)
         super().__init__(name=name)
 
     def __setattr__(self, name: str, child: Any) -> None:

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/core/_signal.py

@@ -28,7 +28,7 @@ from ._signal_backend import (
     SignalDatatypeV,
 )
 from ._soft_signal_backend import SoftSignalBackend
-from ._status import AsyncStatus
+from ._status import AsyncStatus, completed_status
 from ._utils import (
     CALCULATE_TIMEOUT,
     DEFAULT_TIMEOUT,
@@ -448,7 +448,44 @@ async def observe_value(
             do_something_with(value)
     """
 
-    q: asyncio.Queue[SignalDatatypeT | Status] = asyncio.Queue()
+    async for _, value in observe_signals_value(
+        signal, timeout=timeout, done_status=done_status
+    ):
+        yield value
+
+
+async def observe_signals_value(
+    *signals: SignalR[SignalDatatypeT],
+    timeout: float | None = None,
+    done_status: Status | None = None,
+) -> AsyncGenerator[tuple[SignalR[SignalDatatypeT], SignalDatatypeT], None]:
+    """Subscribe to the value of a signal so it can be iterated from.
+
+    Parameters
+    ----------
+    signals:
+        Call subscribe_value on all the signals at the start, and clear_sub on it at the
+        end
+    timeout:
+        If given, how long to wait for each updated value in seconds. If an update
+        is not produced in this time then raise asyncio.TimeoutError
+    done_status:
+        If this status is complete, stop observing and make the iterator return.
+        If it raises an exception then this exception will be raised by the iterator.
+
+    Notes
+    -----
+    Example usage::
+
+        async for signal,value in observe_signals_values(sig1,sig2,..):
+            if signal is sig1:
+                do_something_with(value)
+            elif signal is sig2:
+                do_something_else_with(value)
+    """
+    q: asyncio.Queue[tuple[SignalR[SignalDatatypeT], SignalDatatypeT] | Status] = (
+        asyncio.Queue()
+    )
     if timeout is None:
         get_value = q.get
     else:
@@ -456,12 +493,23 @@ async def observe_value(
         async def get_value():
             return await asyncio.wait_for(q.get(), timeout)
 
+    cbs: dict[SignalR, Callback] = {}
+    for signal in signals:
+
+        def queue_value(value: SignalDatatypeT, signal=signal):
+            q.put_nowait((signal, value))
+
+        cbs[signal] = queue_value
+        signal.subscribe_value(queue_value)
+
     if done_status is not None:
         done_status.add_callback(q.put_nowait)
 
-    signal.subscribe_value(q.put_nowait)
     try:
         while True:
+            # yield here in case something else is filling the queue
+            # like in test_observe_value_times_out_with_no_external_task()
+            await asyncio.sleep(0)
             item = await get_value()
             if done_status and item is done_status:
                 if exc := done_status.exception():
@@ -469,9 +517,10 @@ async def observe_value(
                 else:
                     break
             else:
-                yield cast(SignalDatatypeT, item)
+                yield cast(tuple[SignalR[SignalDatatypeT], SignalDatatypeT], item)
     finally:
-        signal.clear_sub(q.put_nowait)
+        for signal, cb in cbs.items():
+            signal.clear_sub(cb)
 
 
 class _ValueChecker(Generic[SignalDatatypeT]):
@@ -536,15 +585,16 @@ async def wait_for_value(
 async def set_and_wait_for_other_value(
     set_signal: SignalW[SignalDatatypeT],
     set_value: SignalDatatypeT,
-    read_signal: SignalR[SignalDatatypeV],
-    read_value: SignalDatatypeV,
+    match_signal: SignalR[SignalDatatypeV],
+    match_value: SignalDatatypeV | Callable[[SignalDatatypeV], bool],
     timeout: float = DEFAULT_TIMEOUT,
     set_timeout: float | None = None,
+    wait_for_set_completion: bool = True,
 ) -> AsyncStatus:
     """Set a signal and monitor another signal until it has the specified value.
 
     This function sets a set_signal to a specified set_value and waits for
-    a read_signal to have the read_value.
+    a match_signal to have the match_value.
 
     Parameters
     ----------
@@ -552,14 +602,16 @@ async def set_and_wait_for_other_value(
         The signal to set
     set_value:
         The value to set it to
-    read_signal:
+    match_signal:
         The signal to monitor
-    read_value:
+    match_value:
         The value to wait for
     timeout:
         How long to wait for the signal to have the value
     set_timeout:
         How long to wait for the set to complete
+    wait_for_set_completion:
+        This will wait for set completion #More info in how-to docs
 
     Notes
     -----
@@ -568,7 +620,7 @@ async def set_and_wait_for_other_value(
         set_and_wait_for_value(device.acquire, 1, device.acquire_rbv, 1)
     """
     # Start monitoring before the set to avoid a race condition
-    values_gen = observe_value(read_signal)
+    values_gen = observe_value(match_signal)
 
     # Get the initial value from the monitor to make sure we've created it
     current_value = await anext(values_gen)
@@ -576,28 +628,33 @@ async def set_and_wait_for_other_value(
     status = set_signal.set(set_value, timeout=set_timeout)
 
     # If the value was the same as before no need to wait for it to change
-    if current_value != read_value:
+    if current_value != match_value:
 
         async def _wait_for_value():
             async for value in values_gen:
-                if value == read_value:
+                if value == match_value:
                     break
 
         try:
             await asyncio.wait_for(_wait_for_value(), timeout)
+            if wait_for_set_completion:
+                await status
+            return status
         except asyncio.TimeoutError as e:
             raise TimeoutError(
-                f"{read_signal.name} didn't match {read_value} in {timeout}s"
+                f"{match_signal.name} didn't match {match_value} in {timeout}s"
             ) from e
 
-    return status
+    return completed_status()
 
 
 async def set_and_wait_for_value(
     signal: SignalRW[SignalDatatypeT],
     value: SignalDatatypeT,
+    match_value: SignalDatatypeT | Callable[[SignalDatatypeT], bool] | None = None,
     timeout: float = DEFAULT_TIMEOUT,
     status_timeout: float | None = None,
+    wait_for_set_completion: bool = True,
 ) -> AsyncStatus:
     """Set a signal and monitor it until it has that value.
 
@@ -612,10 +669,15 @@ async def set_and_wait_for_value(
         The signal to set
     value:
         The value to set it to
+    match_value:
+        The expected value of the signal after the operation.
+        Used to verify that the set operation was successful.
     timeout:
         How long to wait for the signal to have the value
     status_timeout:
         How long the returned Status will wait for the set to complete
+    wait_for_set_completion:
+        This will wait for set completion #More info in how-to docs
 
     Notes
     -----
@@ -623,6 +685,14 @@ async def set_and_wait_for_value(
 
         set_and_wait_for_value(device.acquire, 1)
     """
+    if match_value is None:
+        match_value = value
     return await set_and_wait_for_other_value(
-        signal, value, signal, value, timeout, status_timeout
+        signal,
+        value,
+        signal,
+        match_value,
+        timeout,
+        status_timeout,
+        wait_for_set_completion,
     )

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/core/_soft_signal_backend.py

@@ -5,7 +5,7 @@ from abc import abstractmethod
 from collections.abc import Sequence
 from dataclasses import dataclass
 from functools import lru_cache
-from typing import Any, Generic, get_origin
+from typing import Any, Generic, get_args, get_origin
 
 import numpy as np
 from bluesky.protocols import Reading
@@ -58,7 +58,7 @@ class SequenceEnumSoftConverter(SoftConverter[Sequence[EnumT]]):
 
 @dataclass
 class NDArraySoftConverter(SoftConverter[Array1D]):
-    datatype: np.dtype
+    datatype: np.dtype | None = None
 
     def write_value(self, value: Any) -> Array1D:
         return np.array(() if value is None else value, dtype=self.datatype)
@@ -98,7 +98,11 @@ def make_converter(datatype: type[SignalDatatype]) -> SoftConverter:
         return SequenceStrSoftConverter()
     elif get_origin(datatype) == Sequence and enum_cls:
         return SequenceEnumSoftConverter(enum_cls)
+    elif datatype is np.ndarray:
+        return NDArraySoftConverter()
     elif get_origin(datatype) == np.ndarray:
+        if datatype not in get_args(SignalDatatype):
+            raise TypeError(f"Expected Array1D[dtype], got {datatype}")
         return NDArraySoftConverter(get_dtype(datatype))
     elif enum_cls:
         return EnumSoftConverter(enum_cls)

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/core/_table.py

@@ -1,6 +1,6 @@
 from __future__ import annotations
 
-from collections.abc import Sequence
+from collections.abc import Callable, Sequence
 from typing import Annotated, Any, TypeVar, get_origin
 
 import numpy as np
@@ -19,6 +19,13 @@ def _concat(value1, value2):
         return value1 + value2
 
 
+def _make_default_factory(dtype: np.dtype) -> Callable[[], np.ndarray]:
+    def numpy_array_default_factory() -> np.ndarray:
+        return np.array([], dtype)
+
+    return numpy_array_default_factory
+
+
 class Table(BaseModel):
     """An abstraction of a Table of str to numpy array."""
 
@@ -45,9 +52,7 @@ class Table(BaseModel):
                     NpArrayPydanticAnnotation.factory(
                         data_type=dtype.type, dimensions=1, strict_data_typing=False
                     ),
-                    Field(
-                        default_factory=lambda dtype=dtype: np.array([], dtype=dtype)
-                    ),
+                    Field(default_factory=_make_default_factory(dtype)),
                 ]
             elif get_origin(anno) is Sequence:
                 new_anno = Annotated[anno, Field(default_factory=list)]

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/core/_utils.py

@@ -2,18 +2,10 @@ from __future__ import annotations
 
 import asyncio
 import logging
-from collections.abc import Awaitable, Callable, Iterable, Sequence
+from collections.abc import Awaitable, Callable, Iterable, Mapping, Sequence
 from dataclasses import dataclass
 from enum import Enum, EnumMeta
-from typing import (
-    Any,
-    Generic,
-    Literal,
-    ParamSpec,
-    TypeVar,
-    get_args,
-    get_origin,
-)
+from typing import Any, Generic, Literal, ParamSpec, TypeVar, get_args, get_origin
 from unittest.mock import Mock
 
 import numpy as np
@@ -22,7 +14,7 @@ T = TypeVar("T")
 P = ParamSpec("P")
 Callback = Callable[[T], None]
 DEFAULT_TIMEOUT = 10.0
-ErrorText = str | dict[str, Exception]
+ErrorText = str | Mapping[str, Exception]
 
 
 class StrictEnum(str, Enum):
@@ -70,6 +62,13 @@ class NotConnected(Exception):
 
         self._errors = errors
 
+    @property
+    def sub_errors(self) -> Mapping[str, Exception]:
+        if isinstance(self._errors, dict):
+            return self._errors.copy()
+        else:
+            return {}
+
     def _format_sub_errors(self, name: str, error: Exception, indent="") -> str:
         if isinstance(error, NotConnected):
             error_txt = ":" + error.format_error_string(indent + self._indent_width)
@@ -100,6 +99,19 @@ class NotConnected(Exception):
     def __str__(self) -> str:
         return self.format_error_string(indent="")
 
+    @classmethod
+    def with_other_exceptions_logged(
+        cls, exceptions: Mapping[str, Exception]
+    ) -> NotConnected:
+        for name, exception in exceptions.items():
+            if not isinstance(exception, NotConnected):
+                logging.exception(
+                    f"device `{name}` raised unexpected exception "
+                    f"{type(exception).__name__}",
+                    exc_info=exception,
+                )
+        return NotConnected(exceptions)
+
 
 @dataclass(frozen=True)
 class WatcherUpdate(Generic[T]):
@@ -137,14 +149,7 @@ async def wait_for_connection(**coros: Awaitable[None]):
                 exceptions[name] = result
 
     if exceptions:
-        for name, exception in exceptions.items():
-            if not isinstance(exception, NotConnected):
-                logging.exception(
-                    f"device `{name}` raised unexpected exception "
-                    f"{type(exception).__name__}",
-                    exc_info=exception,
-                )
-        raise NotConnected(exceptions)
+        raise NotConnected.with_other_exceptions_logged(exceptions)
 
 
 def get_dtype(datatype: type) -> np.dtype:

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/epics/adcore/_core_logic.py

@@ -91,7 +91,9 @@ async def start_acquiring_driver_and_ensure_status(
         subsequent raising (if applicable) due to detector state.
     """
 
-    status = await set_and_wait_for_value(driver.acquire, True, timeout=timeout)
+    status = await set_and_wait_for_value(
+        driver.acquire, True, timeout=timeout, wait_for_set_completion=False
+    )
 
     async def complete_acquisition() -> None:
         """NOTE: possible race condition here between the callback from

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/epics/core/_aioca.py

@@ -115,7 +115,7 @@ class CaLongStrConverter(CaConverter[str]):
     def __init__(self):
         super().__init__(str, dbr.DBR_CHAR_STR, dbr.DBR_CHAR_STR)
 
-    def write_value_and_dbr(self, value: Any) -> Any:
+    def write_value(self, value: Any) -> Any:
         # Add a null in here as this is what the commandline caput does
         # TODO: this should be in the server so check if it can be pushed to asyn
         return value + "\0"

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/epics/core/_p4p.py

@@ -188,6 +188,7 @@ _datatype_converter_from_typeid: dict[
     ("epics:nt/NTScalarArray:1.0", "as"): (Sequence[str], PvaConverter),
     ("epics:nt/NTTable:1.0", "S"): (Table, PvaTableConverter),
     ("epics:nt/NTNDArray:1.0", "v"): (np.ndarray, PvaNDArrayConverter),
+    ("epics:nt/NTNDArray:1.0", "U"): (np.ndarray, PvaNDArrayConverter),
 }
 
 

{ophyd_async-0.8.0a4 → ophyd_async-0.8.0a6}/src/ophyd_async/epics/eiger/_eiger_controller.py

@@ -55,7 +55,12 @@ class EigerController(DetectorController):
     async def arm(self):
         # TODO: Detector state should be an enum see https://github.com/DiamondLightSource/eiger-fastcs/issues/43
         self._arm_status = set_and_wait_for_other_value(
-            self._drv.arm, 1, self._drv.state, "ready", timeout=DEFAULT_TIMEOUT
+            self._drv.arm,
+            1,
+            self._drv.state,
+            "ready",
+            timeout=DEFAULT_TIMEOUT,
+            wait_for_set_completion=False,
         )
 
     async def wait_for_idle(self):

ophyd_async-0.8.0a6/src/ophyd_async/epics/testing/__init__.py

@@ -0,0 +1,24 @@
+from ._example_ioc import (
+    CA_PVA_RECORDS,
+    PVA_RECORDS,
+    ExampleCaDevice,
+    ExampleEnum,
+    ExamplePvaDevice,
+    ExampleTable,
+    connect_example_device,
+    get_example_ioc,
+)
+from ._utils import TestingIOC, generate_random_PV_prefix
+
+__all__ = [
+    "CA_PVA_RECORDS",
+    "PVA_RECORDS",
+    "ExampleCaDevice",
+    "ExampleEnum",
+    "ExamplePvaDevice",
+    "ExampleTable",
+    "connect_example_device",
+    "get_example_ioc",
+    "TestingIOC",
+    "generate_random_PV_prefix",
+]