openreadout 0.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (777) hide show
  1. openreadout-0.1.0/Cargo.lock +4730 -0
  2. openreadout-0.1.0/Cargo.toml +260 -0
  3. openreadout-0.1.0/LICENSE-APACHE +202 -0
  4. openreadout-0.1.0/LICENSE-MIT +21 -0
  5. openreadout-0.1.0/NOTICE +84 -0
  6. openreadout-0.1.0/PKG-INFO +84 -0
  7. openreadout-0.1.0/crates/openreadout-abf/Cargo.toml +30 -0
  8. openreadout-0.1.0/crates/openreadout-abf/LICENSE-APACHE +202 -0
  9. openreadout-0.1.0/crates/openreadout-abf/LICENSE-MIT +21 -0
  10. openreadout-0.1.0/crates/openreadout-abf/README.md +3 -0
  11. openreadout-0.1.0/crates/openreadout-abf/src/assurance.rs +137 -0
  12. openreadout-0.1.0/crates/openreadout-abf/src/atf.rs +590 -0
  13. openreadout-0.1.0/crates/openreadout-abf/src/command.rs +291 -0
  14. openreadout-0.1.0/crates/openreadout-abf/src/dataset.rs +759 -0
  15. openreadout-0.1.0/crates/openreadout-abf/src/file.rs +1478 -0
  16. openreadout-0.1.0/crates/openreadout-abf/src/lib.rs +153 -0
  17. openreadout-0.1.0/crates/openreadout-agilent-ms/Cargo.toml +24 -0
  18. openreadout-0.1.0/crates/openreadout-agilent-ms/LICENSE-APACHE +202 -0
  19. openreadout-0.1.0/crates/openreadout-agilent-ms/LICENSE-MIT +21 -0
  20. openreadout-0.1.0/crates/openreadout-agilent-ms/README.md +3 -0
  21. openreadout-0.1.0/crates/openreadout-agilent-ms/src/assurance.rs +147 -0
  22. openreadout-0.1.0/crates/openreadout-agilent-ms/src/dataset.rs +1742 -0
  23. openreadout-0.1.0/crates/openreadout-agilent-ms/src/layout.rs +1294 -0
  24. openreadout-0.1.0/crates/openreadout-agilent-ms/src/lib.rs +140 -0
  25. openreadout-0.1.0/crates/openreadout-arrow/Cargo.toml +38 -0
  26. openreadout-0.1.0/crates/openreadout-arrow/LICENSE-APACHE +202 -0
  27. openreadout-0.1.0/crates/openreadout-arrow/LICENSE-MIT +21 -0
  28. openreadout-0.1.0/crates/openreadout-arrow/README.md +3 -0
  29. openreadout-0.1.0/crates/openreadout-arrow/src/lib.rs +749 -0
  30. openreadout-0.1.0/crates/openreadout-arrow/src/meta.rs +211 -0
  31. openreadout-0.1.0/crates/openreadout-arrow/src/source.rs +1005 -0
  32. openreadout-0.1.0/crates/openreadout-arrow/src/verify.rs +243 -0
  33. openreadout-0.1.0/crates/openreadout-assay/Cargo.toml +34 -0
  34. openreadout-0.1.0/crates/openreadout-assay/LICENSE-APACHE +202 -0
  35. openreadout-0.1.0/crates/openreadout-assay/LICENSE-MIT +21 -0
  36. openreadout-0.1.0/crates/openreadout-assay/README.md +3 -0
  37. openreadout-0.1.0/crates/openreadout-assay/src/assay.rs +1643 -0
  38. openreadout-0.1.0/crates/openreadout-assay/src/data.rs +378 -0
  39. openreadout-0.1.0/crates/openreadout-assay/src/fit.rs +853 -0
  40. openreadout-0.1.0/crates/openreadout-assay/src/kinetics.rs +376 -0
  41. openreadout-0.1.0/crates/openreadout-assay/src/layout.rs +843 -0
  42. openreadout-0.1.0/crates/openreadout-assay/src/lib.rs +115 -0
  43. openreadout-0.1.0/crates/openreadout-assay/src/linalg.rs +87 -0
  44. openreadout-0.1.0/crates/openreadout-assay/src/output.rs +586 -0
  45. openreadout-0.1.0/crates/openreadout-assay/src/plot.rs +352 -0
  46. openreadout-0.1.0/crates/openreadout-assay/src/request.rs +249 -0
  47. openreadout-0.1.0/crates/openreadout-assay/src/roles.rs +213 -0
  48. openreadout-0.1.0/crates/openreadout-assay/src/stats.rs +301 -0
  49. openreadout-0.1.0/crates/openreadout-assay/src/tables.rs +418 -0
  50. openreadout-0.1.0/crates/openreadout-batch/Cargo.toml +48 -0
  51. openreadout-0.1.0/crates/openreadout-batch/LICENSE-APACHE +202 -0
  52. openreadout-0.1.0/crates/openreadout-batch/LICENSE-MIT +21 -0
  53. openreadout-0.1.0/crates/openreadout-batch/README.md +3 -0
  54. openreadout-0.1.0/crates/openreadout-batch/src/analyze.rs +339 -0
  55. openreadout-0.1.0/crates/openreadout-batch/src/api.rs +439 -0
  56. openreadout-0.1.0/crates/openreadout-batch/src/companion.rs +270 -0
  57. openreadout-0.1.0/crates/openreadout-batch/src/join.rs +1030 -0
  58. openreadout-0.1.0/crates/openreadout-batch/src/lib.rs +52 -0
  59. openreadout-0.1.0/crates/openreadout-batch/src/link.rs +943 -0
  60. openreadout-0.1.0/crates/openreadout-batch/src/measure.rs +65 -0
  61. openreadout-0.1.0/crates/openreadout-batch/src/measures/analysis.rs +686 -0
  62. openreadout-0.1.0/crates/openreadout-batch/src/measures/gate.rs +116 -0
  63. openreadout-0.1.0/crates/openreadout-batch/src/measures/info.rs +153 -0
  64. openreadout-0.1.0/crates/openreadout-batch/src/measures/mod.rs +317 -0
  65. openreadout-0.1.0/crates/openreadout-batch/src/measures/scans.rs +157 -0
  66. openreadout-0.1.0/crates/openreadout-batch/src/measures/stats.rs +226 -0
  67. openreadout-0.1.0/crates/openreadout-batch/src/measures/table.rs +212 -0
  68. openreadout-0.1.0/crates/openreadout-batch/src/measures/trace.rs +157 -0
  69. openreadout-0.1.0/crates/openreadout-batch/src/output.rs +79 -0
  70. openreadout-0.1.0/crates/openreadout-batch/src/pipeline.rs +191 -0
  71. openreadout-0.1.0/crates/openreadout-batch/src/run.rs +756 -0
  72. openreadout-0.1.0/crates/openreadout-batch/src/sheet.rs +675 -0
  73. openreadout-0.1.0/crates/openreadout-batch/src/stat.rs +415 -0
  74. openreadout-0.1.0/crates/openreadout-batch/src/summarize.rs +736 -0
  75. openreadout-0.1.0/crates/openreadout-batch/src/table.rs +497 -0
  76. openreadout-0.1.0/crates/openreadout-batch/src/well.rs +144 -0
  77. openreadout-0.1.0/crates/openreadout-batch/src/write.rs +634 -0
  78. openreadout-0.1.0/crates/openreadout-biophys/Cargo.toml +34 -0
  79. openreadout-0.1.0/crates/openreadout-biophys/LICENSE-APACHE +202 -0
  80. openreadout-0.1.0/crates/openreadout-biophys/LICENSE-MIT +21 -0
  81. openreadout-0.1.0/crates/openreadout-biophys/README.md +3 -0
  82. openreadout-0.1.0/crates/openreadout-biophys/src/assurance.rs +338 -0
  83. openreadout-0.1.0/crates/openreadout-biophys/src/biacore.rs +1829 -0
  84. openreadout-0.1.0/crates/openreadout-biophys/src/biacore_eval.rs +304 -0
  85. openreadout-0.1.0/crates/openreadout-biophys/src/gpr.rs +568 -0
  86. openreadout-0.1.0/crates/openreadout-biophys/src/itc.rs +695 -0
  87. openreadout-0.1.0/crates/openreadout-biophys/src/lib.rs +642 -0
  88. openreadout-0.1.0/crates/openreadout-biophys/src/octet.rs +385 -0
  89. openreadout-0.1.0/crates/openreadout-biophys/src/seahorse.rs +1649 -0
  90. openreadout-0.1.0/crates/openreadout-biophys/src/seahorse_rates.rs +431 -0
  91. openreadout-0.1.0/crates/openreadout-biophys/src/zetasizer.rs +752 -0
  92. openreadout-0.1.0/crates/openreadout-blackrock/Cargo.toml +30 -0
  93. openreadout-0.1.0/crates/openreadout-blackrock/LICENSE-APACHE +202 -0
  94. openreadout-0.1.0/crates/openreadout-blackrock/LICENSE-MIT +21 -0
  95. openreadout-0.1.0/crates/openreadout-blackrock/README.md +3 -0
  96. openreadout-0.1.0/crates/openreadout-blackrock/src/assurance.rs +92 -0
  97. openreadout-0.1.0/crates/openreadout-blackrock/src/dataset.rs +735 -0
  98. openreadout-0.1.0/crates/openreadout-blackrock/src/lib.rs +244 -0
  99. openreadout-0.1.0/crates/openreadout-blackrock/src/nev.rs +311 -0
  100. openreadout-0.1.0/crates/openreadout-blackrock/src/nsx.rs +642 -0
  101. openreadout-0.1.0/crates/openreadout-bruker-tims/Cargo.toml +32 -0
  102. openreadout-0.1.0/crates/openreadout-bruker-tims/LICENSE-APACHE +202 -0
  103. openreadout-0.1.0/crates/openreadout-bruker-tims/LICENSE-MIT +21 -0
  104. openreadout-0.1.0/crates/openreadout-bruker-tims/README.md +3 -0
  105. openreadout-0.1.0/crates/openreadout-bruker-tims/src/assurance.rs +171 -0
  106. openreadout-0.1.0/crates/openreadout-bruker-tims/src/calibration.rs +464 -0
  107. openreadout-0.1.0/crates/openreadout-bruker-tims/src/dataset.rs +1793 -0
  108. openreadout-0.1.0/crates/openreadout-bruker-tims/src/frame.rs +380 -0
  109. openreadout-0.1.0/crates/openreadout-bruker-tims/src/lib.rs +154 -0
  110. openreadout-0.1.0/crates/openreadout-bruker-tims/src/sqlite.rs +843 -0
  111. openreadout-0.1.0/crates/openreadout-chrom/Cargo.toml +33 -0
  112. openreadout-0.1.0/crates/openreadout-chrom/LICENSE-APACHE +202 -0
  113. openreadout-0.1.0/crates/openreadout-chrom/LICENSE-MIT +21 -0
  114. openreadout-0.1.0/crates/openreadout-chrom/README.md +3 -0
  115. openreadout-0.1.0/crates/openreadout-chrom/src/andi_dataset.rs +1037 -0
  116. openreadout-0.1.0/crates/openreadout-chrom/src/assurance.rs +537 -0
  117. openreadout-0.1.0/crates/openreadout-chrom/src/binary.rs +101 -0
  118. openreadout-0.1.0/crates/openreadout-chrom/src/chemstation_dataset.rs +1838 -0
  119. openreadout-0.1.0/crates/openreadout-chrom/src/chemstation_decode.rs +336 -0
  120. openreadout-0.1.0/crates/openreadout-chrom/src/chemstation_header.rs +587 -0
  121. openreadout-0.1.0/crates/openreadout-chrom/src/chemstation_method.rs +197 -0
  122. openreadout-0.1.0/crates/openreadout-chrom/src/chemstation_report.rs +557 -0
  123. openreadout-0.1.0/crates/openreadout-chrom/src/chromeleon.rs +1525 -0
  124. openreadout-0.1.0/crates/openreadout-chrom/src/chromeleon_dataset.rs +2282 -0
  125. openreadout-0.1.0/crates/openreadout-chrom/src/chromeleon_results.rs +1162 -0
  126. openreadout-0.1.0/crates/openreadout-chrom/src/empower_arw.rs +464 -0
  127. openreadout-0.1.0/crates/openreadout-chrom/src/lib.rs +604 -0
  128. openreadout-0.1.0/crates/openreadout-chrom/src/netcdf.rs +654 -0
  129. openreadout-0.1.0/crates/openreadout-chrom/src/openlab_dataset.rs +1940 -0
  130. openreadout-0.1.0/crates/openreadout-chrom/src/openlab_xml.rs +581 -0
  131. openreadout-0.1.0/crates/openreadout-chrom/src/shimadzu_channels.rs +489 -0
  132. openreadout-0.1.0/crates/openreadout-chrom/src/shimadzu_dataset.rs +1849 -0
  133. openreadout-0.1.0/crates/openreadout-chrom/src/shimadzu_peaks.rs +193 -0
  134. openreadout-0.1.0/crates/openreadout-chrom/src/shimadzu_signal.rs +310 -0
  135. openreadout-0.1.0/crates/openreadout-chrom/src/shimadzu_tlm.rs +379 -0
  136. openreadout-0.1.0/crates/openreadout-codecs/Cargo.toml +52 -0
  137. openreadout-0.1.0/crates/openreadout-codecs/LICENSE-APACHE +202 -0
  138. openreadout-0.1.0/crates/openreadout-codecs/LICENSE-MIT +21 -0
  139. openreadout-0.1.0/crates/openreadout-codecs/README.md +3 -0
  140. openreadout-0.1.0/crates/openreadout-codecs/src/blosc.rs +612 -0
  141. openreadout-0.1.0/crates/openreadout-codecs/src/j2k.rs +248 -0
  142. openreadout-0.1.0/crates/openreadout-codecs/src/jxl.rs +84 -0
  143. openreadout-0.1.0/crates/openreadout-codecs/src/lerc.rs +177 -0
  144. openreadout-0.1.0/crates/openreadout-codecs/src/lib.rs +1167 -0
  145. openreadout-0.1.0/crates/openreadout-codecs/src/lzma.rs +503 -0
  146. openreadout-0.1.0/crates/openreadout-codecs/src/webp.rs +41 -0
  147. openreadout-0.1.0/crates/openreadout-core/Cargo.toml +39 -0
  148. openreadout-0.1.0/crates/openreadout-core/LICENSE-APACHE +202 -0
  149. openreadout-0.1.0/crates/openreadout-core/LICENSE-MIT +21 -0
  150. openreadout-0.1.0/crates/openreadout-core/README.md +3 -0
  151. openreadout-0.1.0/crates/openreadout-core/src/acquisition_mode.rs +273 -0
  152. openreadout-0.1.0/crates/openreadout-core/src/assurance.rs +1872 -0
  153. openreadout-0.1.0/crates/openreadout-core/src/batch.rs +391 -0
  154. openreadout-0.1.0/crates/openreadout-core/src/bytes.rs +328 -0
  155. openreadout-0.1.0/crates/openreadout-core/src/cfb.rs +543 -0
  156. openreadout-0.1.0/crates/openreadout-core/src/envelope.rs +100 -0
  157. openreadout-0.1.0/crates/openreadout-core/src/error.rs +209 -0
  158. openreadout-0.1.0/crates/openreadout-core/src/experiment.rs +3581 -0
  159. openreadout-0.1.0/crates/openreadout-core/src/flow.rs +244 -0
  160. openreadout-0.1.0/crates/openreadout-core/src/gzip.rs +849 -0
  161. openreadout-0.1.0/crates/openreadout-core/src/jet.rs +715 -0
  162. openreadout-0.1.0/crates/openreadout-core/src/lib.rs +118 -0
  163. openreadout-0.1.0/crates/openreadout-core/src/limits.rs +260 -0
  164. openreadout-0.1.0/crates/openreadout-core/src/live.rs +357 -0
  165. openreadout-0.1.0/crates/openreadout-core/src/model.rs +1085 -0
  166. openreadout-0.1.0/crates/openreadout-core/src/parallel.rs +262 -0
  167. openreadout-0.1.0/crates/openreadout-core/src/pixel.rs +316 -0
  168. openreadout-0.1.0/crates/openreadout-core/src/plate.rs +727 -0
  169. openreadout-0.1.0/crates/openreadout-core/src/provenance.rs +63 -0
  170. openreadout-0.1.0/crates/openreadout-core/src/reader.rs +731 -0
  171. openreadout-0.1.0/crates/openreadout-core/src/region.rs +550 -0
  172. openreadout-0.1.0/crates/openreadout-core/src/scans.rs +546 -0
  173. openreadout-0.1.0/crates/openreadout-core/src/select.rs +116 -0
  174. openreadout-0.1.0/crates/openreadout-core/src/series.rs +749 -0
  175. openreadout-0.1.0/crates/openreadout-core/src/session.rs +534 -0
  176. openreadout-0.1.0/crates/openreadout-core/src/source.rs +1264 -0
  177. openreadout-0.1.0/crates/openreadout-core/src/stats.rs +1458 -0
  178. openreadout-0.1.0/crates/openreadout-core/src/strict.rs +313 -0
  179. openreadout-0.1.0/crates/openreadout-core/src/time.rs +180 -0
  180. openreadout-0.1.0/crates/openreadout-core/src/trace.rs +871 -0
  181. openreadout-0.1.0/crates/openreadout-core/src/vocab.rs +346 -0
  182. openreadout-0.1.0/crates/openreadout-core/src/xml.rs +43 -0
  183. openreadout-0.1.0/crates/openreadout-core/src/xmljson.rs +102 -0
  184. openreadout-0.1.0/crates/openreadout-core/src/zip.rs +741 -0
  185. openreadout-0.1.0/crates/openreadout-czi/Cargo.toml +35 -0
  186. openreadout-0.1.0/crates/openreadout-czi/LICENSE-APACHE +202 -0
  187. openreadout-0.1.0/crates/openreadout-czi/LICENSE-MIT +21 -0
  188. openreadout-0.1.0/crates/openreadout-czi/README.md +3 -0
  189. openreadout-0.1.0/crates/openreadout-czi/src/assurance.rs +204 -0
  190. openreadout-0.1.0/crates/openreadout-czi/src/attach.rs +155 -0
  191. openreadout-0.1.0/crates/openreadout-czi/src/container.rs +995 -0
  192. openreadout-0.1.0/crates/openreadout-czi/src/convert.rs +311 -0
  193. openreadout-0.1.0/crates/openreadout-czi/src/dataset.rs +2320 -0
  194. openreadout-0.1.0/crates/openreadout-czi/src/fuzzing.rs +52 -0
  195. openreadout-0.1.0/crates/openreadout-czi/src/lib.rs +149 -0
  196. openreadout-0.1.0/crates/openreadout-czi/src/mask.rs +127 -0
  197. openreadout-0.1.0/crates/openreadout-czi/src/xml.rs +613 -0
  198. openreadout-0.1.0/crates/openreadout-dcimg/Cargo.toml +30 -0
  199. openreadout-0.1.0/crates/openreadout-dcimg/LICENSE-APACHE +202 -0
  200. openreadout-0.1.0/crates/openreadout-dcimg/LICENSE-MIT +21 -0
  201. openreadout-0.1.0/crates/openreadout-dcimg/README.md +3 -0
  202. openreadout-0.1.0/crates/openreadout-dcimg/src/assurance.rs +68 -0
  203. openreadout-0.1.0/crates/openreadout-dcimg/src/dataset.rs +504 -0
  204. openreadout-0.1.0/crates/openreadout-dcimg/src/layout.rs +643 -0
  205. openreadout-0.1.0/crates/openreadout-dcimg/src/lib.rs +133 -0
  206. openreadout-0.1.0/crates/openreadout-echem/Cargo.toml +32 -0
  207. openreadout-0.1.0/crates/openreadout-echem/LICENSE-APACHE +202 -0
  208. openreadout-0.1.0/crates/openreadout-echem/LICENSE-MIT +21 -0
  209. openreadout-0.1.0/crates/openreadout-echem/README.md +3 -0
  210. openreadout-0.1.0/crates/openreadout-echem/src/arbin.rs +872 -0
  211. openreadout-0.1.0/crates/openreadout-echem/src/assurance.rs +470 -0
  212. openreadout-0.1.0/crates/openreadout-echem/src/eclab.rs +1042 -0
  213. openreadout-0.1.0/crates/openreadout-echem/src/gamry.rs +451 -0
  214. openreadout-0.1.0/crates/openreadout-echem/src/lib.rs +433 -0
  215. openreadout-0.1.0/crates/openreadout-echem/src/neware.rs +1602 -0
  216. openreadout-0.1.0/crates/openreadout-em/Cargo.toml +33 -0
  217. openreadout-0.1.0/crates/openreadout-em/LICENSE-APACHE +202 -0
  218. openreadout-0.1.0/crates/openreadout-em/LICENSE-MIT +21 -0
  219. openreadout-0.1.0/crates/openreadout-em/README.md +3 -0
  220. openreadout-0.1.0/crates/openreadout-em/src/assurance.rs +376 -0
  221. openreadout-0.1.0/crates/openreadout-em/src/dm/dataset.rs +1676 -0
  222. openreadout-0.1.0/crates/openreadout-em/src/dm/dm5.rs +261 -0
  223. openreadout-0.1.0/crates/openreadout-em/src/dm/mod.rs +106 -0
  224. openreadout-0.1.0/crates/openreadout-em/src/dm/tags.rs +756 -0
  225. openreadout-0.1.0/crates/openreadout-em/src/emd/berkeley.rs +947 -0
  226. openreadout-0.1.0/crates/openreadout-em/src/emd/dataset.rs +1636 -0
  227. openreadout-0.1.0/crates/openreadout-em/src/emd/mod.rs +123 -0
  228. openreadout-0.1.0/crates/openreadout-em/src/emd/spectra.rs +179 -0
  229. openreadout-0.1.0/crates/openreadout-em/src/lib.rs +74 -0
  230. openreadout-0.1.0/crates/openreadout-em/src/mrc/dataset.rs +986 -0
  231. openreadout-0.1.0/crates/openreadout-em/src/mrc/ext.rs +338 -0
  232. openreadout-0.1.0/crates/openreadout-em/src/mrc/header.rs +464 -0
  233. openreadout-0.1.0/crates/openreadout-em/src/mrc/mod.rs +128 -0
  234. openreadout-0.1.0/crates/openreadout-em/src/ser/dataset.rs +1032 -0
  235. openreadout-0.1.0/crates/openreadout-em/src/ser/emi.rs +211 -0
  236. openreadout-0.1.0/crates/openreadout-em/src/ser/file.rs +420 -0
  237. openreadout-0.1.0/crates/openreadout-em/src/ser/mod.rs +94 -0
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