openprotein-python 0.1.1b4__tar.gz → 0.1.1b5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (19) hide show
  1. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/PKG-INFO +1 -1
  2. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/__init__.py +9 -9
  3. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/_version.py +1 -1
  4. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/api/data.py +4 -4
  5. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/api/design.py +6 -6
  6. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/api/embedding.py +6 -6
  7. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/api/jobs.py +3 -3
  8. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/api/poet.py +6 -6
  9. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/api/predict.py +6 -6
  10. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/api/train.py +5 -5
  11. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/base.py +2 -2
  12. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/models.py +1 -1
  13. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/pyproject.toml +1 -1
  14. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/LICENSE.txt +0 -0
  15. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/README.md +0 -0
  16. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/api/__init__.py +0 -0
  17. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/config.py +0 -0
  18. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/errors.py +0 -0
  19. {openprotein_python-0.1.1b4 → openprotein_python-0.1.1b5}/openprotein_python/fasta.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: openprotein-python
3
- Version: 0.1.1b4
3
+ Version: 0.1.1b5
4
4
  Summary: OpenProtein Python interface.
5
5
  Home-page: https://docs.openprotein.ai/
6
6
  License: MIT
@@ -1,13 +1,13 @@
1
- from openprotein._version import __version__
1
+ from openprotein_python._version import __version__
2
2
 
3
- from openprotein.base import APISession
4
- from openprotein.api.jobs import JobsAPI, Job
5
- from openprotein.api.data import DataAPI
6
- from openprotein.api.poet import PoetAPI
7
- from openprotein.api.embedding import EmbeddingAPI
8
- from openprotein.api.train import TrainingAPI
9
- from openprotein.api.design import DesignAPI
10
- from openprotein.api.predict import PredictAPI
3
+ from openprotein_python.base import APISession
4
+ from openprotein_python.api.jobs import JobsAPI, Job
5
+ from openprotein_python.api.data import DataAPI
6
+ from openprotein_python.api.poet import PoetAPI
7
+ from openprotein_python.api.embedding import EmbeddingAPI
8
+ from openprotein_python.api.train import TrainingAPI
9
+ from openprotein_python.api.design import DesignAPI
10
+ from openprotein_python.api.predict import PredictAPI
11
11
  class OpenProtein(APISession):
12
12
  """
13
13
  The base class for accessing OpenProtein API functionality.
@@ -1,2 +1,2 @@
1
- __version_tuple__ = version_tuple = (0, 1, 1, 'b3')
1
+ __version_tuple__ = version_tuple = (0, 1, 1, 'b5')
2
2
  __version__ = version = '.'.join(str(x) for x in __version_tuple__)
@@ -3,10 +3,10 @@ import pydantic
3
3
  from typing import Optional, List
4
4
  from io import BytesIO
5
5
 
6
- from openprotein.models import AssayMetadata, AssayDataPage
7
- from openprotein.errors import APIError
8
- from openprotein.base import APISession
9
- import openprotein.config as config
6
+ from openprotein_python.models import AssayMetadata, AssayDataPage
7
+ from openprotein_python.errors import APIError
8
+ from openprotein_python.base import APISession
9
+ import openprotein_python.config as config
10
10
 
11
11
 
12
12
  def list_models(session: APISession, assay_id: str) -> List:
@@ -1,12 +1,12 @@
1
1
  from typing import Optional
2
2
  import pydantic
3
3
 
4
- from openprotein.base import APISession
5
- from openprotein.api.jobs import AsyncJobFuture, Job
6
- import openprotein.config as config
7
- from openprotein.api.jobs import load_job
8
- from openprotein.models import DesignJobCreate, JobType, DesignResults
9
- from openprotein.errors import (
4
+ from openprotein_python.base import APISession
5
+ from openprotein_python.api.jobs import AsyncJobFuture, Job
6
+ import openprotein_python.config as config
7
+ from openprotein_python.api.jobs import load_job
8
+ from openprotein_python.models import DesignJobCreate, JobType, DesignResults
9
+ from openprotein_python.errors import (
10
10
  APIError,
11
11
  InvalidJob,
12
12
  )
@@ -1,15 +1,15 @@
1
- from openprotein.base import APISession
2
- from openprotein.api.jobs import (
1
+ from openprotein_python.base import APISession
2
+ from openprotein_python.api.jobs import (
3
3
  Job,
4
4
  MappedAsyncJobFuture,
5
5
  PagedAsyncJobFuture,
6
6
  job_get,
7
7
  JobStatus,
8
8
  )
9
- from openprotein.errors import InvalidJob
10
- import openprotein.config as config
11
- from openprotein.api.jobs import load_job
12
- from openprotein.models import (
9
+ from openprotein_python.errors import InvalidJob
10
+ import openprotein_python.config as config
11
+ from openprotein_python.api.jobs import load_job
12
+ from openprotein_python.models import (
13
13
  ModelDescription,
14
14
  TokenInfo,
15
15
  ModelMetadata,
@@ -11,9 +11,9 @@ import tqdm
11
11
  import pydantic
12
12
  from pydantic import BaseModel
13
13
 
14
- from openprotein.errors import TimeoutException
15
- from openprotein.base import APISession
16
- import openprotein.config as config
14
+ from openprotein_python.errors import TimeoutException
15
+ from openprotein_python.base import APISession
16
+ import openprotein_python.config as config
17
17
 
18
18
 
19
19
  class JobStatus(str, Enum):
@@ -5,18 +5,18 @@ import csv
5
5
  import codecs
6
6
  import requests
7
7
 
8
- from openprotein.base import APISession
9
- from openprotein.api.jobs import (
8
+ from openprotein_python.base import APISession
9
+ from openprotein_python.api.jobs import (
10
10
  Job,
11
11
  AsyncJobFuture,
12
12
  StreamingAsyncJobFuture,
13
13
  job_get,
14
14
  job_args_get,
15
15
  )
16
- from openprotein.api.jobs import load_job #as base_load_job
17
- import openprotein.config as config
16
+ from openprotein_python.api.jobs import load_job #as base_load_job
17
+ import openprotein_python.config as config
18
18
 
19
- from openprotein.models import (
19
+ from openprotein_python.models import (
20
20
  MSASamplingMethod,
21
21
  PoetInputType,
22
22
  PoetScoreJob,
@@ -27,7 +27,7 @@ from openprotein.models import (
27
27
  PoetSSPJob,
28
28
  PoetSSPResult,
29
29
  )
30
- from openprotein.errors import (
30
+ from openprotein_python.errors import (
31
31
  InvalidParameterError,
32
32
  MissingParameterError,
33
33
  APIError,
@@ -1,18 +1,18 @@
1
1
  from typing import Optional, List, Union
2
2
  import pydantic
3
3
 
4
- from openprotein.base import APISession
5
- from openprotein.api.jobs import AsyncJobFuture, Job
6
- from openprotein.models import (
4
+ from openprotein_python.base import APISession
5
+ from openprotein_python.api.jobs import AsyncJobFuture, Job
6
+ from openprotein_python.models import (
7
7
  SequenceDataset,
8
8
  SequenceData,
9
9
  PredictJob,
10
10
  PredictSingleSiteJob,
11
11
  JobType,
12
12
  )
13
- from openprotein.errors import InvalidParameterError, APIError, InvalidJob
14
- from openprotein.api.train import TrainFuture
15
- from openprotein.api.jobs import load_job
13
+ from openprotein_python.errors import InvalidParameterError, APIError, InvalidJob
14
+ from openprotein_python.api.train import TrainFuture
15
+ from openprotein_python.api.jobs import load_job
16
16
 
17
17
 
18
18
  def _create_predict_job(
@@ -1,11 +1,11 @@
1
1
  from typing import Optional, List, Union
2
2
  import pydantic
3
- from openprotein.base import APISession
4
- from openprotein.api.jobs import AsyncJobFuture, Job
3
+ from openprotein_python.base import APISession
4
+ from openprotein_python.api.jobs import AsyncJobFuture, Job
5
5
 
6
- from openprotein.models import TrainGraph, JobType, Jobplus, CVResults
7
- from openprotein.errors import InvalidParameterError, APIError, InvalidJob
8
- from openprotein.api.data import AssayDataset, AssayMetadata
6
+ from openprotein_python.models import TrainGraph, JobType, Jobplus, CVResults
7
+ from openprotein_python.errors import InvalidParameterError, APIError, InvalidJob
8
+ from openprotein_python.api.data import AssayDataset, AssayMetadata
9
9
 
10
10
 
11
11
  def list_models(session: APISession, job_id: str) -> List:
@@ -1,4 +1,4 @@
1
- import openprotein.config as config
1
+ import openprotein_python.config as config
2
2
 
3
3
  import requests
4
4
  from urllib.parse import urljoin
@@ -7,7 +7,7 @@ from typing import Union
7
7
  from requests.adapters import HTTPAdapter
8
8
  from requests.packages.urllib3.util.retry import Retry
9
9
 
10
- from openprotein.errors import APIError, InvalidParameterError, MissingParameterError, AuthError
10
+ from openprotein_python.errors import APIError, InvalidParameterError, MissingParameterError, AuthError
11
11
 
12
12
  class BearerAuth(requests.auth.AuthBase):
13
13
  """
@@ -4,7 +4,7 @@ from datetime import datetime
4
4
  from enum import Enum
5
5
  import numpy as np
6
6
  from pydantic import BaseModel, Field, validator
7
- from openprotein.api.jobs import Job, JobStatus
7
+ from openprotein_python.api.jobs import Job, JobStatus
8
8
 
9
9
  class ModelDescription(BaseModel):
10
10
  citation_title: Optional[str] = None
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "openprotein_python"
3
- version = "0.1.1b4"
3
+ version = "0.1.1b5"
4
4
  description = "OpenProtein Python interface."
5
5
  license = "MIT"
6
6
  readme = "README.md"