opencloning 0.5__tar.gz → 0.5.1__tar.gz

{opencloning-0.5 → opencloning-0.5.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: opencloning
-Version: 0.5
+Version: 0.5.1
 Summary: Backend of OpenCloning, a web application to generate molecular cloning strategies in json format, and share them with others.
 License: MIT
 License-File: LICENSE
@@ -23,7 +23,7 @@ Requires-Dist: pairwise-alignments-to-msa (>=0.1.1,<0.2.0)
 Requires-Dist: pandas (>=2.2.3,<3.0.0)
 Requires-Dist: primer3-py (>=2.3,<3.0)
 Requires-Dist: pydantic (>=2.7.1,<3.0.0)
-Requires-Dist: pydna (>=5.5.5,<6.0.0)
+Requires-Dist: pydna (>=5.5.6,<6.0.0)
 Requires-Dist: python-multipart
 Requires-Dist: pyyaml (>=6.0.2,<7.0.0)
 Requires-Dist: regex (>=2024.11.6,<2025.0.0)

{opencloning-0.5 → opencloning-0.5.1}/pyproject.toml

@@ -8,7 +8,7 @@ authors = ["Manuel Lera-Ramirez <manulera14@gmail.com>"]
 description = "Backend of OpenCloning, a web application to generate molecular cloning strategies in json format, and share them with others."
 license = "MIT"
 name = "opencloning"
-version = "0.5"
+version = "0.5.1"
 package-mode = true
 readme = "README.md"
 repository = "https://github.com/manulera/OpenCloning_backend"
@@ -29,7 +29,7 @@ primer3-py = "^2.3"
 biopython = "^1.85"
 packaging = "^25.0"
 pairwise-alignments-to-msa = "^0.1.1"
-pydna = "^5.5.5"
+pydna = "^5.5.6"
 
 [tool.poetry.group.dev.dependencies]
 autopep8 = "^2.0.4"

{opencloning-0.5 → opencloning-0.5.1}/src/opencloning/dna_functions.py

@@ -130,8 +130,8 @@ async def request_from_snapgene(plasmid_set: dict, plasmid_name: str) -> Dseqrec
 async def request_from_addgene(repository_id: str) -> Dseqrecord:
 
     url = f'https://www.addgene.org/{repository_id}/sequences/'
-    async with get_http_client() as client:
-        resp = await client.get(url)
+    async with get_http_client() as addgene_client:
+        resp = await addgene_client.get(url)
     if resp.status_code == 404:
         raise HTTPException(404, 'wrong addgene id')
     soup = BeautifulSoup(resp.content, 'html.parser')
@@ -151,7 +151,14 @@ async def request_from_addgene(repository_id: str) -> Dseqrecord:
             404,
             f'The requested plasmid does not have full sequences, see https://www.addgene.org/{repository_id}/sequences/',
         )
-    dseqr = (await get_sequences_from_file_url(sequence_file_url))[0]
+
+    async with get_http_client() as addgene_client:
+        # For media.addgene.org URLs, we need to first visit www.addgene.org
+        # to get the authentication cookie (__Secure_media_edge_auth)
+        await addgene_client.get('https://www.addgene.org/', follow_redirects=True)
+
+        dseqr = (await get_sequences_from_file_url(sequence_file_url, get_function=addgene_client.get))[0]
+
     dseqr.name = plasmid_name
     dseqr.source = AddgeneIdSource(
         repository_id=repository_id,