opencloning 0.5.0.1__tar.gz → 0.5.1__tar.gz

{opencloning-0.5.0.1 → opencloning-0.5.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: opencloning
-Version: 0.5.0.1
+Version: 0.5.1
 Summary: Backend of OpenCloning, a web application to generate molecular cloning strategies in json format, and share them with others.
 License: MIT
 License-File: LICENSE

{opencloning-0.5.0.1 → opencloning-0.5.1}/pyproject.toml

@@ -8,7 +8,7 @@ authors = ["Manuel Lera-Ramirez <manulera14@gmail.com>"]
 description = "Backend of OpenCloning, a web application to generate molecular cloning strategies in json format, and share them with others."
 license = "MIT"
 name = "opencloning"
-version = "0.5.0.1"
+version = "0.5.1"
 package-mode = true
 readme = "README.md"
 repository = "https://github.com/manulera/OpenCloning_backend"

{opencloning-0.5.0.1 → opencloning-0.5.1}/src/opencloning/dna_functions.py

@@ -130,8 +130,8 @@ async def request_from_snapgene(plasmid_set: dict, plasmid_name: str) -> Dseqrec
 async def request_from_addgene(repository_id: str) -> Dseqrecord:
 
     url = f'https://www.addgene.org/{repository_id}/sequences/'
-    async with get_http_client() as client:
-        resp = await client.get(url)
+    async with get_http_client() as addgene_client:
+        resp = await addgene_client.get(url)
     if resp.status_code == 404:
         raise HTTPException(404, 'wrong addgene id')
     soup = BeautifulSoup(resp.content, 'html.parser')
@@ -151,7 +151,14 @@ async def request_from_addgene(repository_id: str) -> Dseqrecord:
             404,
             f'The requested plasmid does not have full sequences, see https://www.addgene.org/{repository_id}/sequences/',
         )
-    dseqr = (await get_sequences_from_file_url(sequence_file_url))[0]
+
+    async with get_http_client() as addgene_client:
+        # For media.addgene.org URLs, we need to first visit www.addgene.org
+        # to get the authentication cookie (__Secure_media_edge_auth)
+        await addgene_client.get('https://www.addgene.org/', follow_redirects=True)
+
+        dseqr = (await get_sequences_from_file_url(sequence_file_url, get_function=addgene_client.get))[0]
+
     dseqr.name = plasmid_name
     dseqr.source = AddgeneIdSource(
         repository_id=repository_id,