opencloning 0.3.0__tar.gz → 0.3.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (50) hide show
  1. {opencloning-0.3.0 → opencloning-0.3.1}/PKG-INFO +1 -1
  2. {opencloning-0.3.0 → opencloning-0.3.1}/pyproject.toml +1 -1
  3. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/bug_fixing/README.md +1 -1
  4. {opencloning-0.3.0 → opencloning-0.3.1}/LICENSE +0 -0
  5. {opencloning-0.3.0 → opencloning-0.3.1}/README.md +0 -0
  6. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/__init__.py +0 -0
  7. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/_version.py +0 -0
  8. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/api_config_utils.py +0 -0
  9. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/app_settings.py +0 -0
  10. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/assembly2.py +0 -0
  11. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/EBIC/__init__.py +0 -0
  12. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/EBIC/barcode.gb +0 -0
  13. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/EBIC/common_plasmid.gb +0 -0
  14. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/EBIC/example.py +0 -0
  15. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/EBIC/primer_design_settings.py +0 -0
  16. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/__init__.py +0 -0
  17. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/index.html +0 -0
  18. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/pombe/__init__.py +0 -0
  19. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/pombe/index.html +0 -0
  20. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/pombe/pombe_all.sh +0 -0
  21. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/pombe/pombe_clone.py +0 -0
  22. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/pombe/pombe_gather.py +0 -0
  23. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/pombe/pombe_get_primers.py +0 -0
  24. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/pombe/pombe_summary.py +0 -0
  25. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/ziqiang_et_al2024/__init__.py +0 -0
  26. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/ziqiang_et_al2024/index.html +0 -0
  27. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/batch_cloning/ziqiang_et_al2024/ziqiang_et_al2024.json +0 -0
  28. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/bug_fixing/__init__.py +0 -0
  29. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/bug_fixing/backend_v0_3.py +0 -0
  30. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/cre_lox.py +0 -0
  31. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/dna_functions.py +0 -0
  32. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/dna_utils.py +0 -0
  33. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/ebic/__init__.py +0 -0
  34. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/ebic/primer_design.py +0 -0
  35. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/ebic/primer_design_settings.py +0 -0
  36. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/endpoints/annotation.py +0 -0
  37. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/endpoints/assembly.py +0 -0
  38. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/endpoints/external_import.py +0 -0
  39. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/endpoints/no_assembly.py +0 -0
  40. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/endpoints/no_input.py +0 -0
  41. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/endpoints/other.py +0 -0
  42. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/endpoints/primer_design.py +0 -0
  43. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/gateway.py +0 -0
  44. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/get_router.py +0 -0
  45. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/main.py +0 -0
  46. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/ncbi_requests.py +0 -0
  47. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/primer_design.py +0 -0
  48. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/pydantic_models.py +0 -0
  49. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/request_examples.py +0 -0
  50. {opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/utils.py +0 -0
{opencloning-0.3.0 → opencloning-0.3.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: opencloning
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- Version: 0.3.0
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+ Version: 0.3.1
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  Summary: Backend of OpenCloning, a web application to generate molecular cloning strategies in json format, and share them with others.
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  License: MIT
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  Author: Manuel Lera-Ramirez
{opencloning-0.3.0 → opencloning-0.3.1}/pyproject.toml RENAMED
@@ -8,7 +8,7 @@ authors = ["Manuel Lera-Ramirez <manulera14@gmail.com>"]
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  description = "Backend of OpenCloning, a web application to generate molecular cloning strategies in json format, and share them with others."
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  license = "MIT"
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  name = "opencloning"
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- version = "0.3.0"
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+ version = "0.3.1"
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  package-mode = true
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  readme = "README.md"
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  repository = "https://github.com/manulera/OpenCloning_backend"
{opencloning-0.3.0 → opencloning-0.3.1}/src/opencloning/bug_fixing/README.md RENAMED
@@ -121,7 +121,7 @@ If you want to fix several bugs from the command line, you can use the `backend_
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  Before running this script, you need to migrate the data to the latest version of the schema. See [full documentation](https://github.com/OpenCloning/OpenCloning_LinkML?tab=readme-ov-file#migration-from-previous-versions-of-the-schema), but basically:
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  ```bash
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- python -m opencloning.migrations.migrate file1.json file2.json ...
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+ python -m opencloning_linkl.migrations.migrate file1.json file2.json ...
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  ```
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  Then, you can run the script:
{opencloning-0.3.0 → opencloning-0.3.1}/LICENSE RENAMED
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{opencloning-0.3.0 → opencloning-0.3.1}/README.md RENAMED
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