open-data-sci 0.1.0__tar.gz

open_data_sci-0.1.0/.env.example

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+########################################################
+# open-data-sci environment variables
+#
+# Copy this file to .env and fill in the values you need.
+# Only the section that matches your chosen PROVIDER
+# needs to be populated.
+########################################################
+
+# ── Model selection ────────────────────────────────────
+PROVIDER=
+MODEL=
+SECONDARY_PROVIDER=
+SECONDARY_MODEL=
+
+# ── Anthropic ──────────────────────────────────────────
+# PROVIDER=anthropic
+ANTHROPIC_API_KEY=
+
+# ── OpenAI ─────────────────────────────────────────────
+# PROVIDER=openai
+OPENAI_API_KEY=
+
+# ── Google Gemini (direct API) ─────────────────────────
+# PROVIDER=gemini
+GOOGLE_API_KEY=
+
+# ── Google Vertex AI ───────────────────────────────────
+# PROVIDER=vertexai
+#
+# Always required:
+GOOGLE_CLOUD_PROJECT=
+GOOGLE_CLOUD_LOCATION=
+#
+# Authentication (pick one):
+#   a) Service account key file — set this to the path of your JSON key:
+GOOGLE_APPLICATION_CREDENTIALS=
+#   b) User credentials — run: gcloud auth application-default login
+#      (no env var needed; ADC picks up ~/.config/gcloud/... automatically)
+#   c) On GCP infrastructure (Cloud Run, GCE, GKE) — no env var needed;
+#      the metadata server provides credentials automatically.
+
+# ── Azure OpenAI ───────────────────────────────────────
+# PROVIDER=azure
+#
+# Always required:
+AZURE_OPENAI_ENDPOINT=
+AZURE_OPENAI_API_VERSION=
+#
+# Authentication (pick one):
+#   a) API key:
+AZURE_OPENAI_API_KEY=
+#   b) Service principal (requires pip install 'open-data-sci[azure]');
+#      azure-identity's DefaultAzureCredential reads these automatically:
+AZURE_TENANT_ID=
+AZURE_CLIENT_ID=
+AZURE_CLIENT_SECRET=
+
+# ── AWS Bedrock ────────────────────────────────────────
+# PROVIDER=bedrock
+#
+REGION=
+#
+# Authentication (pick one):
+#   a) Long-lived IAM credentials:
+AWS_ACCESS_KEY_ID=
+AWS_SECRET_ACCESS_KEY=
+#   b) Temporary credentials via aws-vault / sts assume-role
+#      (aws-vault exports all three automatically):
+AWS_SESSION_TOKEN=
+#   c) On AWS infrastructure (EC2, ECS, Lambda) — no env var needed;
+#      boto3 fetches credentials from the instance metadata service.
+
+# ── Ollama / OpenAI-compatible server (self-hosted) ─────────────────
+# PROVIDER=ollama | openai_compatible_server
+LLM_SERVER_BASE_URL=
+#
+# For openai_compatible_server, set an API key if your server requires one
+# (falls back to "EMPTY" when unset, which works for most local servers):
+# OPENAI_API_KEY=
+
+# ── Sampling & reasoning ───────────────────────────────
+TEMPERATURE=
+THINKING_BUDGET=
+
+# ── Agent customization ────────────────────────────────
+NAME=
+MCP_SERVERS=
+
+# ── Web access ─────────────────────────────────────────
+EXTRA_FETCH_DOMAINS=
+
+# ── Context management ─────────────────────────────────
+MIDTURN_COMPACTION_THRESHOLD=
+
+# ── Skills ─────────────────────────────────────────────
+# Path to a directory of user-defined skill files (.yaml, .yml, .json, .md).
+# Leave unset to disable user-defined skill loading.
+SKILLS_DIRECTORY=
+# Path to the built-in skills directory. Defaults to the bundled resources/skills.
+BUILTIN_SKILLS_DIRECTORY=
+
+# ── Worker configuration ───────────────────────────────
+WORKER_TIMEOUT_SECONDS=
+
+# ── Code execution ─────────────────────────────────────
+CODE_EXEC_TIMEOUT=

open_data_sci-0.1.0/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[codz]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+coverage.xml
+*.cover
+*.py.cover
+*.lcov
+.hypothesis/
+.pytest_cache/
+cover/
+coverage/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv / uv python pins
+.python-version
+
+# Environments
+.env
+.envrc
+.venv/
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Ruff
+.ruff_cache/
+
+# mkdocs
+/site
+
+# Pyright / pytype
+.pytype/
+.pyre/
+
+# Logs
+*.log
+logs/
+
+# OS
+.DS_Store
+Thumbs.db
+
+# Editor
+.idea/
+.vscode/
+*.swp
+*.swo
+*~
+
+# Project-specific: datasets and workspace data
+data/
+
+# Project-specific: sandbox / agent output
+output/
+*.xlsx
+!examples/*.xlsx
+
+# Benchmark artifacts
+.benchmarks/

open_data_sci-0.1.0/LICENSE

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open_data_sci-0.1.0/Makefile

@@ -0,0 +1,106 @@
+.PHONY: help install install-dev install-system-dependencies format format-check lint lint-fix type-check deadcode static-checks all clean test test-unit test-component docs docs-serve
+
+PACKAGE = opendatasci
+
+help:
+	@echo "Available targets:"
+	@echo "  install        Install package in production mode (EXTRAS=aws,gemini,...)"
+	@echo "  install-dev    Install package with dev dependencies (EXTRAS=aws,gemini,...)"
+	@echo "  install-system-dependencies Install system-level dependencies required by sandbox-runtime (SRT)"
+	@echo "  format         Run ruff formatter (writes)"
+	@echo "  format-check   Run ruff formatter in check mode (read-only)"
+	@echo "  lint           Run ruff linter"
+	@echo "  lint-fix       Run ruff linter with auto-fix"
+	@echo "  type-check     Run mypy type checker"
+	@echo "  deadcode       Find dead code with vulture (60%% confidence)"
+	@echo "  static-checks  Run format-check, lint, and type-check"
+	@echo "  all            Format, lint-fix, and type-check (writes)"
+	@echo "  test           Run all tests (unit + component)"
+	@echo "  test-unit      Run unit tests only"
+	@echo "  test-component       Run component tests only"
+	@echo "  docs           Build documentation to site/"
+	@echo "  docs-serve     Serve documentation locally with live-reload"
+	@echo "  clean          Remove build artifacts and caches"
+
+EXTRAS ?=
+_extra_flags = $(foreach e,$(EXTRAS),--extra $(e))
+
+install:
+	uv sync $(_extra_flags)
+
+install-dev:
+	uv sync --extra dev $(_extra_flags)
+
+# sandbox-runtime (SRT) relies on native OS sandboxing binaries.
+# macOS needs ripgrep; Linux also needs bubblewrap and socat.
+install-system-dependencies:
+	@if [ "$$(uname)" = "Darwin" ]; then \
+		echo "Installing macOS system deps for SRT (ripgrep)..."; \
+		brew install ripgrep; \
+	elif [ "$$(uname)" = "Linux" ]; then \
+		echo "Installing Linux system deps for SRT (bubblewrap socat ripgrep)..."; \
+		if command -v apt-get >/dev/null 2>&1; then \
+			sudo apt-get install -y bubblewrap socat ripgrep; \
+		elif command -v dnf >/dev/null 2>&1; then \
+			sudo dnf install -y bubblewrap socat ripgrep; \
+		elif command -v pacman >/dev/null 2>&1; then \
+			sudo pacman -S --noconfirm bubblewrap socat ripgrep; \
+		else \
+			echo "Unsupported package manager. Install bubblewrap, socat, and ripgrep manually."; \
+			exit 1; \
+		fi; \
+	else \
+		echo "Unsupported platform: $$(uname)"; \
+		exit 1; \
+	fi
+
+format:
+	uv run ruff format $(PACKAGE)
+
+format-check:
+	uv run ruff format --check $(PACKAGE)
+
+lint:
+	uv run ruff check $(PACKAGE)
+
+lint-fix:
+	uv run ruff check --fix $(PACKAGE)
+
+type-check:
+	uv run mypy $(PACKAGE)
+
+deadcode:
+	uv run vulture $(PACKAGE) --min-confidence 60
+
+static-checks: format-check lint type-check
+
+all: format lint-fix type-check
+
+test: test-unit test-component
+
+test-unit:
+	uv run pytest tests/unit -n auto --cov=$(PACKAGE) --cov-report=term-missing --cov-report=html:coverage/unit --cov-report=xml:coverage/unit.xml --junitxml=coverage/unit-junit.xml -o junit_family=legacy
+
+test-component:
+	uv run pytest tests/component -n auto --cov=$(PACKAGE) --cov-report=term-missing --cov-report=html:coverage/component --cov-report=xml:coverage/component.xml --junitxml=coverage/component-junit.xml -o junit_family=legacy
+
+clean:
+	rm -rf build/
+	rm -rf dist/
+	rm -rf *.egg-info/
+	rm -rf .pytest_cache/
+	rm -rf .mypy_cache/
+	rm -rf .ruff_cache/
+	rm -rf site/
+	rm -rf .uv-cache/
+	rm -rf .benchmarks/
+	rm -rf coverage/
+	rm -f .coverage .coverage.*
+	find . -type d -name "__pycache__" -exec rm -rf {} + 2>/dev/null || true
+	find . -type f -name "*.pyc" -delete 2>/dev/null || true
+
+docs:
+	uv run mkdocs build --strict -f mkdocs.yaml
+
+docs-serve:
+	uv run mkdocs serve -f mkdocs.yaml