omop-lite 0.0.17__tar.gz → 0.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (49) hide show
  1. {omop_lite-0.0.17 → omop_lite-0.1.0}/PKG-INFO +6 -1
  2. {omop_lite-0.0.17 → omop_lite-0.1.0}/README.md +4 -0
  3. omop_lite-0.1.0/omop_lite/__init__.py +0 -0
  4. omop_lite-0.1.0/omop_lite/cli.py +915 -0
  5. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/db/__init__.py +4 -4
  6. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/db/base.py +73 -20
  7. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/db/postgres.py +7 -7
  8. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/db/sqlserver.py +15 -8
  9. omop_lite-0.1.0/omop_lite/settings.py +34 -0
  10. {omop_lite-0.0.17 → omop_lite-0.1.0}/pyproject.toml +4 -2
  11. omop_lite-0.0.17/omop_lite/__init__.py +0 -37
  12. omop_lite-0.0.17/omop_lite/settings.py +0 -27
  13. {omop_lite-0.0.17 → omop_lite-0.1.0}/.gitignore +0 -0
  14. {omop_lite-0.0.17 → omop_lite-0.1.0}/LICENSE +0 -0
  15. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/fts.sql +0 -0
  16. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/mssql/constraints.sql +0 -0
  17. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/mssql/ddl.sql +0 -0
  18. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/mssql/indices.sql +0 -0
  19. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/mssql/primary_keys.sql +0 -0
  20. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/pg/constraints.sql +0 -0
  21. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/pg/ddl.sql +0 -0
  22. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/pg/fts_index.sql +0 -0
  23. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/pg/indices.sql +0 -0
  24. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/scripts/pg/primary_keys.sql +0 -0
  25. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/CDM_SOURCE.csv +0 -0
  26. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/CONCEPT.csv +0 -0
  27. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/CONCEPT_ANCESTOR.csv +0 -0
  28. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/CONCEPT_CLASS.csv +0 -0
  29. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/CONCEPT_RELATIONSHIP.csv +0 -0
  30. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/CONCEPT_SYNONYM.csv +0 -0
  31. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/CONDITION_OCCURRENCE.csv +0 -0
  32. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/DOMAIN.csv +0 -0
  33. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/DRUG_STRENGTH.csv +0 -0
  34. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/MEASUREMENT.csv +0 -0
  35. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/OBSERVATION.csv +0 -0
  36. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/PERSON.csv +0 -0
  37. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/RELATIONSHIP.csv +0 -0
  38. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/100/VOCABULARY.csv +0 -0
  39. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/CONCEPT.csv +0 -0
  40. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/CONDITION_ERA.csv +0 -0
  41. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/CONDITION_OCCURRENCE.csv +0 -0
  42. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/DRUG_ERA.csv +0 -0
  43. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/DRUG_EXPOSURE.csv +0 -0
  44. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/MEASUREMENT.csv +0 -0
  45. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/OBSERVATION.csv +0 -0
  46. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/OBSERVATION_PERIOD.csv +0 -0
  47. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/PERSON.csv +0 -0
  48. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/PROCEDURE_OCCURRENCE.csv +0 -0
  49. {omop_lite-0.0.17 → omop_lite-0.1.0}/omop_lite/synthetic/1000/VISIT_OCCURRENCE.csv +0 -0
{omop_lite-0.0.17 → omop_lite-0.1.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: omop-lite
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- Version: 0.0.17
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+ Version: 0.1.0
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  Summary: Get an OMOP CDM database running quickly.
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  License-File: LICENSE
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  Requires-Python: >=3.13
@@ -8,6 +8,7 @@ Requires-Dist: psycopg2-binary>=2.9.10
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  Requires-Dist: pydantic-settings>=2.8.1
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  Requires-Dist: pyodbc>=5.2.0
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  Requires-Dist: sqlalchemy>=2.0.39
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+ Requires-Dist: typer>=0.16.0
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  Description-Content-Type: text/markdown
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  # omop-lite
@@ -106,6 +107,10 @@ Install with custom values:
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  helm install omop-lite omop-lite/omop-lite -f values.yaml
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  ```
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+ ### CLI
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+ `uv run omop-lite --help`
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+
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  #### Using Your Own Data
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  To use your own data with the Helm chart:
{omop_lite-0.0.17 → omop_lite-0.1.0}/README.md RENAMED
@@ -94,6 +94,10 @@ Install with custom values:
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  helm install omop-lite omop-lite/omop-lite -f values.yaml
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  ```
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+ ### CLI
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+ `uv run omop-lite --help`
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+
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  #### Using Your Own Data
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  To use your own data with the Helm chart:
omop_lite-0.1.0/omop_lite/__init__.py ADDED
File without changes