omop-lite 0.0.17__tar.gz → 0.0.18__tar.gz

{omop_lite-0.0.17 → omop_lite-0.0.18}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: omop-lite
-Version: 0.0.17
+Version: 0.0.18
 Summary: Get an OMOP CDM database running quickly.
 License-File: LICENSE
 Requires-Python: >=3.13

{omop_lite-0.0.17 → omop_lite-0.0.18}/omop_lite/db/sqlserver.py

@@ -37,7 +37,7 @@ class SQLServerDatabase(Database):
         with open(str(file_path), "r", encoding="utf-8", newline="") as f:
             reader = csv.reader(f, delimiter=delimiter)
             headers = next(reader)
-            
+
             columns = ", ".join(f"[{col}]" for col in headers)
             placeholders = ", ".join(["?" for _ in headers])
             insert_sql = f"INSERT INTO {settings.schema_name}.[{table_name}] ({columns}) VALUES ({placeholders})"
@@ -46,9 +46,14 @@ class SQLServerDatabase(Database):
             try:
                 cursor = conn.cursor()
                 for line_no, row in enumerate(reader, start=2):
-                    if len(row) != len(headers):
-                        print(f"Row {line_no} skipped: expected {len(headers)} values, got {len(row)} – {row}")
-                        continue
+                    # Pad short rows
+                    if len(row) < len(headers):
+                        row += [None] * (len(headers) - len(row))
+                        logger.info(f"Row {line_no} padded: {row}")
+                    elif len(row) > len(headers):
+                        logger.info(f"Row {line_no} trimmed: too many values ({len(row)}), expected {len(headers)} – trimming.")
+                        row = row[:len(headers)]
+
                     cursor.execute(insert_sql, row)
                 conn.commit()
             finally:

{omop_lite-0.0.17 → omop_lite-0.0.18}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "omop-lite"
-version = "0.0.17"
+version = "0.0.18"
 description = "Get an OMOP CDM database running quickly."
 readme = "README.md"
 requires-python = ">=3.13"