omop-constructs 0.3.7__tar.gz → 0.3.8__tar.gz

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  1. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/PKG-INFO +1 -1
  2. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/pyproject.toml +1 -1
  3. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/condition_episode_mv.py +2 -1
  4. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/episode_joins.py +4 -1
  5. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/condition_modifier_join.py +1 -0
  6. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/condition_modifier_mv.py +2 -1
  7. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/README.md +0 -0
  8. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/__init__.py +0 -0
  9. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/__init__.py +0 -0
  10. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/adapters.py +0 -0
  11. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/concepts/__init__.py +0 -0
  12. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/concepts/concept_mappers.py +0 -0
  13. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/concepts/concept_standardisation.py +0 -0
  14. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/conditions/__init__.py +0 -0
  15. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/conditions/condition_joins.py +0 -0
  16. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/conditions/condition_mappers.py +0 -0
  17. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/demography/__init__.py +0 -0
  18. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/demography/demography_matview.py +0 -0
  19. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/demography/demography_queries.py +0 -0
  20. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/__init__.py +0 -0
  21. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/condition_episode_objects.py +0 -0
  22. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/course_joins.py +0 -0
  23. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/course_mv.py +0 -0
  24. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/cycle_join.py +0 -0
  25. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/cycle_mv.py +0 -0
  26. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/episode_factories.py +0 -0
  27. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/fraction_joins.py +0 -0
  28. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/fraction_mv.py +0 -0
  29. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/surgical_joins.py +0 -0
  30. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/surgical_procedure_mv.py +0 -0
  31. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/systemic_treatment_joins.py +0 -0
  32. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/systemic_treatment_mv.py +0 -0
  33. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/treatment_summary_joins.py +0 -0
  34. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/treatment_summary_mv.py +0 -0
  35. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/events/__init__.py +0 -0
  36. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/events/dx_linked_event_mv.py +0 -0
  37. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/events/dx_linked_obs_mv.py +0 -0
  38. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/events/dx_linked_procedure_mv.py +0 -0
  39. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/events/event_factories.py +0 -0
  40. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/events/event_queries.py +0 -0
  41. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/events/observation_queries.py +0 -0
  42. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/events/procedure_queries.py +0 -0
  43. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/__init__.py +0 -0
  44. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/modifier_factories.py +0 -0
  45. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/modifier_joins.py +0 -0
  46. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/modifier_mappers.py +0 -0
  47. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/procedure_modifier_joins.py +0 -0
  48. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/procedure_modifier_mv.py +0 -0
  49. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/source_factories.py +0 -0
  50. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/core/__init__.py +0 -0
  51. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/core/base.py +0 -0
  52. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/core/constructs.py +0 -0
  53. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/core/ddl.py +0 -0
  54. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/core/errors.py +0 -0
  55. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/core/materialized.py +0 -0
  56. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/core/plan.py +0 -0
  57. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/core/registry.py +0 -0
  58. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/py.typed +0 -0
  59. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/semantics/__init__.py +0 -0
  60. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/semantics/adapters.py +0 -0
  61. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/semantics/lookups.py +0 -0
  62. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/semantics/runtime_lookups.py +0 -0
  63. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/services/__init__.py +0 -0
  64. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/services/concept.py +0 -0
  65. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/services/person.py +0 -0
  66. {omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/typing.py +0 -0
{omop_constructs-0.3.7 → omop_constructs-0.3.8}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: omop-constructs
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- Version: 0.3.7
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+ Version: 0.3.8
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  Summary: For building complex constructs on top of the omop-alchemy library.
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  Author: Georgie Kennedy
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  Author-email: Georgie Kennedy <georgina.kennedy@unsw.edu.au>
{omop_constructs-0.3.7 → omop_constructs-0.3.8}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [project]
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  name = "omop-constructs"
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- version = "0.3.7"
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+ version = "0.3.8"
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  description = "For building complex constructs on top of the omop-alchemy library."
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  readme = "README.md"
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  authors = [
{omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/condition_episode_mv.py RENAMED
@@ -162,4 +162,5 @@ class DxTreatStartMV(MaterializedViewMixin, Base):
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  treatment_start: so.Mapped[Optional[date]] = so.mapped_column(sa.Date)
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  treatment_end: so.Mapped[Optional[date]] = so.mapped_column(sa.Date)
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- treatment_regimen_count: so.Mapped[Optional[int]] = so.mapped_column(sa.Integer)
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+ treatment_regimen_count: so.Mapped[Optional[int]] = so.mapped_column(sa.Integer)
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+
{omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/episodes/episode_joins.py RENAMED
@@ -39,4 +39,7 @@ treatment_regimen_with_cycles = get_episode_hierarchy_query(
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  child_label="cycle_episode"
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  )
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- dx_window_select = dx_treatment_window()
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+ dx_window_select = dx_treatment_window()
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+
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+
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+
{omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/condition_modifier_join.py RENAMED
@@ -29,6 +29,7 @@ modified_conditions_join = (
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  Condition_Occurrence.condition_source_value,
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  Condition_Occurrence.condition_concept_id,
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  condition_concept.concept_name.label('condition_concept'),
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+ condition_concept.concept_code.label('condition_code'),
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  Episode_Event.episode_id.label('condition_episode'),
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  TStageMV.stage_id.label('t_stage_id'),
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  TStageMV.stage_date.label('t_stage_date'),
{omop_constructs-0.3.7 → omop_constructs-0.3.8}/src/omop_constructs/alchemy/modifiers/condition_modifier_mv.py RENAMED
@@ -29,13 +29,14 @@ class StageModifier(MaterializedViewMixin, Base):
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  __deps__ = (
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  AllStageModifierMV.__mv_name__,
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  )
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- mv_id = sa.Column(primary_key=True)
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+ mv_id = sa.Column(sa.Integer, primary_key=True)
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  person_id = sa.Column(sa.Integer)
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  condition_start_date = sa.Column(sa.Date)
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  condition_occurrence_id = sa.Column(sa.Integer)
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  condition_source_value = sa.Column(sa.String)
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  condition_concept_id = sa.Column(sa.Integer)
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  condition_concept = sa.Column(sa.String)
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+ condition_code = sa.Column(sa.String)
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  condition_episode = sa.Column(sa.Integer)
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  stage_id = sa.Column(sa.Integer)
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  stage_date = sa.Column(sa.Date)