omnigenome 0.3.6a0__tar.gz → 0.3.8a0__tar.gz
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- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/PKG-INFO +2 -2
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/omnigenome.egg-info/PKG-INFO +2 -2
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/setup.py +20 -3
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/LICENSE +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/omnigenome/__init__.py +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/omnigenome.egg-info/SOURCES.txt +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/omnigenome.egg-info/dependency_links.txt +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/omnigenome.egg-info/entry_points.txt +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/omnigenome.egg-info/requires.txt +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/omnigenome.egg-info/top_level.txt +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/setup.cfg +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/setup_omnigenome.py +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/tests/test_dataset_patterns.py +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/tests/test_examples_syntax.py +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/tests/test_model_loading.py +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/tests/test_rna_functions.py +0 -0
- {omnigenome-0.3.6a0 → omnigenome-0.3.8a0}/tests/test_training_patterns.py +0 -0
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Metadata-Version: 2.4
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Name: omnigenome
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Version: 0.3.
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Version: 0.3.8a0
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Summary: OmniGenome: A comprehensive toolkit for genome analysis.
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Home-page: https://github.com/yangheng95/OmniGenBench
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Author: Yang, Heng
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<h3 align="center">OmniGenBench
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<h3 align="center">OmniGenBench provides an all-in-one solution for genomic foundation model finetuning, inference, deployment and automated benchmarking, designed for research and applications in genomics.</h3>
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<div align="center">
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Metadata-Version: 2.4
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Name: omnigenome
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Version: 0.3.
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Version: 0.3.8a0
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Summary: OmniGenome: A comprehensive toolkit for genome analysis.
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Home-page: https://github.com/yangheng95/OmniGenBench
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Author: Yang, Heng
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<h3 align="center">OmniGenBench
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<h3 align="center">OmniGenBench provides an all-in-one solution for genomic foundation model finetuning, inference, deployment and automated benchmarking, designed for research and applications in genomics.</h3>
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<div align="center">
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from pathlib import Path
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from setuptools import setup, find_packages
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# Avoid importing the package at build time to prevent executing heavy imports
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# and side effects in omnigenbench/__init__.py before dependencies are installed.
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def read_version_from_init() -> str:
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init_path = Path(__file__).parent / "omnigenbench" / "__init__.py"
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text = init_path.read_text(encoding="utf8")
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for line in text.splitlines():
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if line.startswith("__version__"):
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# Expected format: __version__ = "x.y.z"
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import re
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match = re.search(r"__version__\s*=\s*['\"]([^'\"]+)['\"]", line)
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if match:
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return match.group(1)
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raise RuntimeError("Unable to find __version__ in omnigenbench/__init__.py")
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cwd = Path(__file__).parent
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long_description = (cwd / "README.MD").read_text(encoding="utf8")
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# Use setup_omnigenome.py and setup_omnigenbench.py for separate builds
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setup(
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name="omnigenbench",
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version=
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version=read_version_from_init(),
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description="OmniGenoBench: A comprehensive toolkit for genome analysis.",
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long_description=long_description,
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long_description_content_type="text/markdown",
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"packaging",
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"peft",
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"dill",
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"accelerate"
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"accelerate",
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"plotly",
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"logomaker",
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"matplotlib",
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],
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extras_require=extras,
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classifiers=[
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