olmsted-cli 0.4.0__tar.gz

olmsted_cli-0.4.0/.github/workflows/release.yml

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+name: Release
+
+# Build a wheel + sdist and publish to PyPI on tag push (vX.Y.Z), using
+# PyPI Trusted Publishing (OIDC) — no stored API token. A manual run
+# (workflow_dispatch) publishes to TestPyPI instead, for smoke-testing.
+#
+# One-time setup on PyPI/TestPyPI (web UI, project owner):
+#   Add a "trusted publisher" for this repo with:
+#     owner: matsengrp   repo: olmsted-cli
+#     workflow: release.yml   environment: pypi  (or testpypi)
+
+on:
+  push:
+    tags:
+      - "v*.*.*"
+  workflow_dispatch:
+    inputs:
+      target:
+        description: "Publish target"
+        type: choice
+        options: ["testpypi"]
+        default: "testpypi"
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    name: Build distributions
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          # setuptools-scm needs full history + tags to derive the version.
+          fetch-depth: 0
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+      - name: Build wheel + sdist
+        run: |
+          python -m pip install --upgrade pip build
+          python -m build
+      - name: Show derived version and artifacts
+        run: ls -l dist/
+      - uses: actions/upload-artifact@v4
+        with:
+          name: dist
+          path: dist/
+
+  publish-pypi:
+    name: Publish to PyPI
+    needs: build
+    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
+    runs-on: ubuntu-latest
+    environment: pypi
+    permissions:
+      id-token: write   # OIDC token for trusted publishing
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          name: dist
+          path: dist/
+      - uses: pypa/gh-action-pypi-publish@release/v1
+
+  publish-testpypi:
+    name: Publish to TestPyPI
+    needs: build
+    if: github.event_name == 'workflow_dispatch'
+    runs-on: ubuntu-latest
+    environment: testpypi
+    permissions:
+      id-token: write
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          name: dist
+          path: dist/
+      - uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          repository-url: https://test.pypi.org/legacy/

olmsted_cli-0.4.0/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+*.manifest
+*.spec
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Virtual environments
+venv/
+ENV/
+env/
+.venv
+
+# IDEs
+.vscode/
+.idea/
+*.swp
+*.swo
+*~
+
+# OS files
+.DS_Store
+Thumbs.db
+
+# Project specific
+*.log
+**/_*/
+.claude/

olmsted_cli-0.4.0/.gitmodules

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+[submodule "airr-standards"]
+	path = airr-standards
+	url = https://github.com/airr-community/airr-standards.git