okf-mcp 0.1.0__tar.gz

okf_mcp-0.1.0/LICENSE

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okf_mcp-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: okf-mcp
+Version: 0.1.0
+Summary: MCP server for Open Knowledge Format (OKF) bundles — expose okf-ingest's deterministic consume verbs (search, context, graph impact, diff, doctor) as agent tools.
+Author-email: Travis Jakel <travis.s.jakel@gmail.com>
+License: Apache-2.0
+Project-URL: Homepage, https://github.com/travisjakel/okf-mcp
+Keywords: okf,open-knowledge-format,mcp,model-context-protocol,knowledge-graph,duckdb
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: okf-ingest>=0.7.0
+Requires-Dist: mcp>=1.2
+Dynamic: license-file
+
+# okf-mcp
+
+**MCP server for [Open Knowledge Format](https://github.com/GoogleCloudPlatform/knowledge-catalog) bundles** — expose [okf-ingest](https://github.com/travisjakel/okf-ingest)'s deterministic consume verbs as tools any MCP client (Claude Code, Cursor, custom agents) can call.
+
+Existing OKF MCP servers hand agents the markdown *files*. This one hands them
+the **queryable catalog and concept graph**: index-first context assembly,
+impact/backlink analysis, SQL over frontmatter, drift diffs, and health checks —
+all deterministic okf-ingest code, no model calls in the server.
+
+## Tools
+
+| Tool | What the agent gets |
+|---|---|
+| `okf_list_bundles` | which bundles this server exposes |
+| `okf_search` | concepts whose title/body match a term |
+| `okf_get_concept` | one concept's frontmatter + full body |
+| `okf_context` | **the flagship** — index.md + a concept's link-neighborhood as one curated markdown blob (the author's graph, not fuzzy matches) |
+| `okf_impact` | inbound / outbound / transitive links — "what breaks if X changes" |
+| `okf_sql` | read-only SELECT over the DuckDB catalog (`okf_concept`, `okf_link`, `okf_validation`) |
+| `okf_diff` | what changed on disk since the server loaded the bundle — an agent's memory-refresh between looks |
+| `okf_refresh` | re-ingest a directory bundle after `okf_diff` shows changes |
+| `okf_doctor` | health score + per-rule findings before trusting a bundle |
+
+## Install & run
+
+```bash
+pip install okf-mcp        # depends on okf-ingest >= 0.7.0
+
+# one or more bundles: directories and/or okf-ingest .duckdb catalogs,
+# optionally named (first one is the default target)
+okf-mcp ~/my-bundle
+okf-mcp wiki=~/wiki notes=~/vault snapshot=./kb.duckdb
+```
+
+Register with Claude Code:
+
+```bash
+claude mcp add okf -- okf-mcp ~/my-bundle
+```
+
+Or in any MCP client config:
+
+```json
+{ "mcpServers": { "okf": { "command": "okf-mcp", "args": ["wiki=/path/to/bundle"] } } }
+```
+
+## Design notes
+
+- **Read-only.** Directory bundles are ingested into disposable in-memory
+  DuckDB catalogs at startup; `.duckdb` sources open read-only; `okf_sql`
+  accepts SELECT/WITH only. The server never writes to your bundle.
+- **Deterministic.** Every tool is plain okf-ingest code — same input, same
+  answer; the only nondeterminism an agent sees is its own.
+- **`[[wikilinks]]` work.** Vault-style bundles (Obsidian/Logseq/Foam) resolve
+  by id / alias / title / stem, same as okf-ingest 0.6.0+.
+
+Apache-2.0. Sibling project: [okf-ingest](https://github.com/travisjakel/okf-ingest) (the R + Python ingestion tool this wraps).

okf_mcp-0.1.0/README.md

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+# okf-mcp
+
+**MCP server for [Open Knowledge Format](https://github.com/GoogleCloudPlatform/knowledge-catalog) bundles** — expose [okf-ingest](https://github.com/travisjakel/okf-ingest)'s deterministic consume verbs as tools any MCP client (Claude Code, Cursor, custom agents) can call.
+
+Existing OKF MCP servers hand agents the markdown *files*. This one hands them
+the **queryable catalog and concept graph**: index-first context assembly,
+impact/backlink analysis, SQL over frontmatter, drift diffs, and health checks —
+all deterministic okf-ingest code, no model calls in the server.
+
+## Tools
+
+| Tool | What the agent gets |
+|---|---|
+| `okf_list_bundles` | which bundles this server exposes |
+| `okf_search` | concepts whose title/body match a term |
+| `okf_get_concept` | one concept's frontmatter + full body |
+| `okf_context` | **the flagship** — index.md + a concept's link-neighborhood as one curated markdown blob (the author's graph, not fuzzy matches) |
+| `okf_impact` | inbound / outbound / transitive links — "what breaks if X changes" |
+| `okf_sql` | read-only SELECT over the DuckDB catalog (`okf_concept`, `okf_link`, `okf_validation`) |
+| `okf_diff` | what changed on disk since the server loaded the bundle — an agent's memory-refresh between looks |
+| `okf_refresh` | re-ingest a directory bundle after `okf_diff` shows changes |
+| `okf_doctor` | health score + per-rule findings before trusting a bundle |
+
+## Install & run
+
+```bash
+pip install okf-mcp        # depends on okf-ingest >= 0.7.0
+
+# one or more bundles: directories and/or okf-ingest .duckdb catalogs,
+# optionally named (first one is the default target)
+okf-mcp ~/my-bundle
+okf-mcp wiki=~/wiki notes=~/vault snapshot=./kb.duckdb
+```
+
+Register with Claude Code:
+
+```bash
+claude mcp add okf -- okf-mcp ~/my-bundle
+```
+
+Or in any MCP client config:
+
+```json
+{ "mcpServers": { "okf": { "command": "okf-mcp", "args": ["wiki=/path/to/bundle"] } } }
+```
+
+## Design notes
+
+- **Read-only.** Directory bundles are ingested into disposable in-memory
+  DuckDB catalogs at startup; `.duckdb` sources open read-only; `okf_sql`
+  accepts SELECT/WITH only. The server never writes to your bundle.
+- **Deterministic.** Every tool is plain okf-ingest code — same input, same
+  answer; the only nondeterminism an agent sees is its own.
+- **`[[wikilinks]]` work.** Vault-style bundles (Obsidian/Logseq/Foam) resolve
+  by id / alias / title / stem, same as okf-ingest 0.6.0+.
+
+Apache-2.0. Sibling project: [okf-ingest](https://github.com/travisjakel/okf-ingest) (the R + Python ingestion tool this wraps).

okf_mcp-0.1.0/okf_mcp/__init__.py

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+"""okf-mcp — MCP server for Open Knowledge Format bundles (okf-ingest tools)."""
+from .registry import BundleRegistry
+
+__all__ = ["BundleRegistry"]
+__version__ = "0.1.0"

okf_mcp-0.1.0/okf_mcp/registry.py

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+"""okf-mcp — bundle registry and tool logic.
+
+Plain functions over a BundleRegistry so the logic is testable without an MCP
+transport; okf_mcp.server wraps these as MCP tools. All operations are
+READ-ONLY with respect to the source bundles: directory sources are ingested
+into disposable in-memory DuckDB catalogs at startup (refresh re-ingests),
+.duckdb sources are opened read-only. Everything is deterministic okf-ingest
+code — no model calls.
+"""
+from __future__ import annotations
+
+import os
+from dataclasses import dataclass
+from typing import Any, Optional
+
+import duckdb
+import okf
+from okf.diff import diff as okf_diff
+from okf.doctor import doctor as okf_doctor
+from okf.graph import backlinks as okf_backlinks, impact as okf_impact
+
+
+@dataclass
+class Bundle:
+    name: str
+    source: str          # directory or .duckdb path
+    kind: str            # "dir" | "catalog"
+    con: Any             # duckdb connection
+
+
+class BundleRegistry:
+    """Named OKF bundles the server exposes. The first added is the default."""
+
+    def __init__(self) -> None:
+        self.bundles: dict[str, Bundle] = {}
+
+    def add(self, name: str, source: str) -> Bundle:
+        if name in self.bundles:
+            raise ValueError(f"duplicate bundle name: {name}")
+        source = os.path.abspath(source)
+        if source.endswith(".duckdb") and os.path.isfile(source):
+            con = duckdb.connect(source, read_only=True)
+            b = Bundle(name, source, "catalog", con)
+        elif os.path.isdir(source):
+            con, _ = okf.ingest(source)   # in-memory catalog
+            b = Bundle(name, source, "dir", con)
+        else:
+            raise ValueError(f"not a bundle dir or .duckdb catalog: {source}")
+        self.bundles[name] = b
+        return b
+
+    def get(self, name: Optional[str] = None) -> Bundle:
+        if not self.bundles:
+            raise RuntimeError("no bundles loaded")
+        if name is None:
+            return next(iter(self.bundles.values()))
+        if name not in self.bundles:
+            raise ValueError(
+                f"unknown bundle {name!r}; available: {', '.join(self.bundles)}")
+        return self.bundles[name]
+
+    def refresh(self, name: Optional[str] = None) -> dict:
+        b = self.get(name)
+        if b.kind != "dir":
+            raise ValueError(f"bundle {b.name!r} is a static catalog; nothing to refresh")
+        old = b.con
+        b.con, summary = okf.ingest(b.source)
+        old.close()
+        keep = ("n_concepts", "conformant", "links_total", "links_broken")
+        return {"bundle": b.name, **{k: v for k, v in summary.items() if k in keep}}
+
+    def close(self) -> None:
+        for b in self.bundles.values():
+            try:
+                b.con.close()
+            except Exception:
+                pass
+
+
+# ---- tool logic -------------------------------------------------------------
+
+def _rows(cur) -> list[dict]:
+    cols = [d[0] for d in cur.description]
+    return [dict(zip(cols, r)) for r in cur.fetchall()]
+
+
+def list_bundles(reg: BundleRegistry) -> list[dict]:
+    out = []
+    for b in reg.bundles.values():
+        n = b.con.execute(
+            "SELECT count(*) FROM okf_concept WHERE reserved = FALSE").fetchone()[0]
+        out.append({"name": b.name, "source": b.source, "kind": b.kind,
+                    "n_concepts": n, "default": b is next(iter(reg.bundles.values()))})
+    return out
+
+
+def search(reg: BundleRegistry, term: str, bundle: Optional[str] = None,
+           limit: int = 20) -> list[dict]:
+    b = reg.get(bundle)
+    return _rows(b.con.execute(
+        "SELECT path, type, title, description FROM okf_concept "
+        "WHERE body ILIKE ? OR title ILIKE ? ORDER BY path LIMIT ?",
+        [f"%{term}%", f"%{term}%", int(limit)]))
+
+
+def sql(reg: BundleRegistry, query: str, bundle: Optional[str] = None) -> list[dict]:
+    q = query.lstrip().lower()
+    if not (q.startswith("select") or q.startswith("with")):
+        raise ValueError("only SELECT/WITH queries are allowed")
+    b = reg.get(bundle)
+    return _rows(b.con.execute(query))
+
+
+def get_concept(reg: BundleRegistry, path: str, bundle: Optional[str] = None) -> dict:
+    b = reg.get(bundle)
+    rows = _rows(b.con.execute(
+        "SELECT path, type, title, description, tags, timestamp, body "
+        "FROM okf_concept WHERE path = ?", [path]))
+    if not rows:
+        raise ValueError(f"concept not found: {path}")
+    return rows[0]
+
+
+def context(reg: BundleRegistry, start: Optional[str] = None, depth: int = 1,
+            max_tokens: int = 8000, bundle: Optional[str] = None) -> dict:
+    b = reg.get(bundle)
+    return okf.context(b.con, start=start, depth=depth, max_tokens=max_tokens)
+
+
+def impact(reg: BundleRegistry, concept: str, bundle: Optional[str] = None) -> dict:
+    b = reg.get(bundle)
+    return okf_impact(b.con, concept)
+
+
+def backlinks(reg: BundleRegistry, concept: str, bundle: Optional[str] = None) -> list:
+    b = reg.get(bundle)
+    return okf_backlinks(b.con, concept)
+
+
+def diff(reg: BundleRegistry, bundle: Optional[str] = None) -> dict:
+    b = reg.get(bundle)
+    if b.kind != "dir":
+        raise ValueError(
+            f"bundle {b.name!r} is a static catalog; drift-diff needs a directory source")
+    return okf_diff(b.con, b.source)
+
+
+def doctor(reg: BundleRegistry, bundle: Optional[str] = None,
+           stale_days: Optional[int] = None, now: Optional[str] = None) -> dict:
+    b = reg.get(bundle)
+    return okf_doctor(b.con, now=now, stale_days=stale_days)

okf_mcp-0.1.0/okf_mcp/server.py

@@ -0,0 +1,139 @@
+"""okf-mcp — MCP server exposing okf-ingest's consume verbs as agent tools.
+
+Usage:
+    okf-mcp <bundle> [<bundle> ...]
+
+Each <bundle> is a directory (an OKF bundle of markdown files) or a .duckdb
+catalog produced by `okf ingest`, optionally prefixed with a name:
+    okf-mcp ~/wiki notes=~/vault snapshot=./kb.duckdb
+
+Runs on stdio (the standard MCP local-server transport). Directory bundles are
+ingested into disposable in-memory catalogs at startup; sources are never
+written to. Register with an MCP client, e.g.:
+    claude mcp add okf -- okf-mcp ~/my-bundle
+"""
+from __future__ import annotations
+
+import datetime
+import sys
+from typing import Optional
+
+from mcp.server.fastmcp import FastMCP
+
+from . import registry as R
+
+mcp = FastMCP("okf")
+reg = R.BundleRegistry()
+
+
+@mcp.tool()
+def okf_list_bundles() -> list[dict]:
+    """List the knowledge bundles this server exposes (name, source, concept
+    count). Call this first when unsure which bundle to target; every other
+    tool takes an optional `bundle` name and defaults to the first bundle."""
+    return R.list_bundles(reg)
+
+
+@mcp.tool()
+def okf_search(term: str, bundle: Optional[str] = None, limit: int = 20) -> list[dict]:
+    """Find concepts whose title or body contains `term` (case-insensitive
+    substring). Call this to locate relevant concepts before reading them —
+    returns path/type/title/description; follow up with okf_get_concept or
+    okf_context on a returned path."""
+    return R.search(reg, term, bundle, limit)
+
+
+@mcp.tool()
+def okf_get_concept(path: str, bundle: Optional[str] = None) -> dict:
+    """Read one concept (its frontmatter fields and full markdown body) by its
+    bundle-relative path, e.g. 'ops/backups.md'. Use after okf_search when you
+    need the actual content of a single concept."""
+    return R.get_concept(reg, path, bundle)
+
+
+@mcp.tool()
+def okf_context(start: Optional[str] = None, depth: int = 1,
+                max_tokens: int = 8000, bundle: Optional[str] = None) -> dict:
+    """Assemble a curated, index-first context blob: index.md plus the concept
+    at `start` and everything within `depth` links of it, as one markdown
+    string (capped near `max_tokens`). This follows the links the bundle's
+    author wrote — prefer it over search when you want the full neighborhood
+    of a topic rather than keyword matches. Omit `start` to pack the whole
+    bundle."""
+    return R.context(reg, start, depth, max_tokens, bundle)
+
+
+@mcp.tool()
+def okf_impact(concept: str, bundle: Optional[str] = None) -> dict:
+    """Report what links to and from a concept: outbound links, inbound links
+    (backlinks), and the full transitive set of concepts reachable from it.
+    Call this to answer 'what depends on X' or 'what breaks if X changes'."""
+    return R.impact(reg, concept, bundle)
+
+
+@mcp.tool()
+def okf_sql(query: str, bundle: Optional[str] = None) -> list[dict]:
+    """Run a read-only SQL (SELECT/WITH) query against the bundle's DuckDB
+    catalog. Tables: okf_concept (path, type, title, description, tags,
+    timestamp, body, content_hash), okf_link (src_path, dst_raw, dst_path,
+    resolved), okf_validation (path, severity, rule, message). Use for
+    structured questions the other tools don't cover, e.g. counting concepts
+    by type or listing everything tagged 'x'."""
+    return R.sql(reg, query, bundle)
+
+
+@mcp.tool()
+def okf_diff(bundle: Optional[str] = None) -> dict:
+    """Report what changed in a directory-backed bundle since this server
+    loaded it (or since the last okf_refresh): concepts added/removed/changed,
+    type/title changes, links added/removed and newly broken/fixed. Call this
+    to re-sync your understanding after files may have changed; if it shows
+    changes, call okf_refresh to load them."""
+    return R.diff(reg, bundle)
+
+
+@mcp.tool()
+def okf_refresh(bundle: Optional[str] = None) -> dict:
+    """Re-ingest a directory-backed bundle so the catalog reflects the current
+    files. Call after okf_diff reports changes, or when you know the bundle
+    was edited since the server started."""
+    return reg.refresh(bundle)
+
+
+@mcp.tool()
+def okf_doctor(bundle: Optional[str] = None, stale_days: Optional[int] = None) -> dict:
+    """Health report for a bundle: score (0-100 = % of concepts with zero
+    findings), error/warning counts, and per-rule counts (broken links,
+    orphans, missing fields, duplicate titles; timestamps older than
+    `stale_days` if given). Call before relying heavily on a bundle, or to
+    answer 'is this knowledge base healthy'."""
+    now = None
+    if stale_days is not None:
+        now = datetime.datetime.now(datetime.timezone.utc).strftime("%Y-%m-%dT%H:%M:%SZ")
+    return R.doctor(reg, bundle, stale_days, now)
+
+
+def main(argv: Optional[list[str]] = None) -> int:
+    args = sys.argv[1:] if argv is None else argv
+    if not args or args[0] in ("-h", "--help"):
+        print(__doc__)
+        return 0 if args else 2
+    for a in args:
+        if "=" in a and not a.split("=", 1)[0].startswith((".", "/", "\\")) \
+                and ":" not in a.split("=", 1)[0]:
+            name, source = a.split("=", 1)
+        else:
+            name, source = None, a
+        if name is None:
+            base = source.rstrip("/\\").replace("\\", "/").rsplit("/", 1)[-1]
+            name = base[:-7] if base.endswith(".duckdb") else base
+        reg.add(name, source)
+    try:
+        mcp.run()          # stdio transport
+    finally:
+        reg.close()
+    return 0
+
+
+if __name__ == "__main__":
+    sys.exit(main())

okf_mcp-0.1.0/okf_mcp.egg-info/PKG-INFO

@@ -0,0 +1,72 @@
+Metadata-Version: 2.4
+Name: okf-mcp
+Version: 0.1.0
+Summary: MCP server for Open Knowledge Format (OKF) bundles — expose okf-ingest's deterministic consume verbs (search, context, graph impact, diff, doctor) as agent tools.
+Author-email: Travis Jakel <travis.s.jakel@gmail.com>
+License: Apache-2.0
+Project-URL: Homepage, https://github.com/travisjakel/okf-mcp
+Keywords: okf,open-knowledge-format,mcp,model-context-protocol,knowledge-graph,duckdb
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: okf-ingest>=0.7.0
+Requires-Dist: mcp>=1.2
+Dynamic: license-file
+
+# okf-mcp
+
+**MCP server for [Open Knowledge Format](https://github.com/GoogleCloudPlatform/knowledge-catalog) bundles** — expose [okf-ingest](https://github.com/travisjakel/okf-ingest)'s deterministic consume verbs as tools any MCP client (Claude Code, Cursor, custom agents) can call.
+
+Existing OKF MCP servers hand agents the markdown *files*. This one hands them
+the **queryable catalog and concept graph**: index-first context assembly,
+impact/backlink analysis, SQL over frontmatter, drift diffs, and health checks —
+all deterministic okf-ingest code, no model calls in the server.
+
+## Tools
+
+| Tool | What the agent gets |
+|---|---|
+| `okf_list_bundles` | which bundles this server exposes |
+| `okf_search` | concepts whose title/body match a term |
+| `okf_get_concept` | one concept's frontmatter + full body |
+| `okf_context` | **the flagship** — index.md + a concept's link-neighborhood as one curated markdown blob (the author's graph, not fuzzy matches) |
+| `okf_impact` | inbound / outbound / transitive links — "what breaks if X changes" |
+| `okf_sql` | read-only SELECT over the DuckDB catalog (`okf_concept`, `okf_link`, `okf_validation`) |
+| `okf_diff` | what changed on disk since the server loaded the bundle — an agent's memory-refresh between looks |
+| `okf_refresh` | re-ingest a directory bundle after `okf_diff` shows changes |
+| `okf_doctor` | health score + per-rule findings before trusting a bundle |
+
+## Install & run
+
+```bash
+pip install okf-mcp        # depends on okf-ingest >= 0.7.0
+
+# one or more bundles: directories and/or okf-ingest .duckdb catalogs,
+# optionally named (first one is the default target)
+okf-mcp ~/my-bundle
+okf-mcp wiki=~/wiki notes=~/vault snapshot=./kb.duckdb
+```
+
+Register with Claude Code:
+
+```bash
+claude mcp add okf -- okf-mcp ~/my-bundle
+```
+
+Or in any MCP client config:
+
+```json
+{ "mcpServers": { "okf": { "command": "okf-mcp", "args": ["wiki=/path/to/bundle"] } } }
+```
+
+## Design notes
+
+- **Read-only.** Directory bundles are ingested into disposable in-memory
+  DuckDB catalogs at startup; `.duckdb` sources open read-only; `okf_sql`
+  accepts SELECT/WITH only. The server never writes to your bundle.
+- **Deterministic.** Every tool is plain okf-ingest code — same input, same
+  answer; the only nondeterminism an agent sees is its own.
+- **`[[wikilinks]]` work.** Vault-style bundles (Obsidian/Logseq/Foam) resolve
+  by id / alias / title / stem, same as okf-ingest 0.6.0+.
+
+Apache-2.0. Sibling project: [okf-ingest](https://github.com/travisjakel/okf-ingest) (the R + Python ingestion tool this wraps).

okf_mcp-0.1.0/okf_mcp.egg-info/SOURCES.txt

@@ -0,0 +1,13 @@
+LICENSE
+README.md
+pyproject.toml
+okf_mcp/__init__.py
+okf_mcp/registry.py
+okf_mcp/server.py
+okf_mcp.egg-info/PKG-INFO
+okf_mcp.egg-info/SOURCES.txt
+okf_mcp.egg-info/dependency_links.txt
+okf_mcp.egg-info/entry_points.txt
+okf_mcp.egg-info/requires.txt
+okf_mcp.egg-info/top_level.txt
+tests/test_okf_mcp.py

okf_mcp-0.1.0/okf_mcp.egg-info/dependency_links.txt

@@ -0,0 +1 @@
+

okf_mcp-0.1.0/okf_mcp.egg-info/entry_points.txt

@@ -0,0 +1,2 @@
+[console_scripts]
+okf-mcp = okf_mcp.server:main

okf_mcp-0.1.0/okf_mcp.egg-info/requires.txt

@@ -0,0 +1,2 @@
+okf-ingest>=0.7.0
+mcp>=1.2

okf_mcp-0.1.0/okf_mcp.egg-info/top_level.txt

@@ -0,0 +1 @@
+okf_mcp

okf_mcp-0.1.0/pyproject.toml

@@ -0,0 +1,26 @@
+[build-system]
+requires = ["setuptools>=68"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "okf-mcp"
+version = "0.1.0"
+description = "MCP server for Open Knowledge Format (OKF) bundles — expose okf-ingest's deterministic consume verbs (search, context, graph impact, diff, doctor) as agent tools."
+readme = "README.md"
+license = { text = "Apache-2.0" }
+authors = [{ name = "Travis Jakel", email = "travis.s.jakel@gmail.com" }]
+requires-python = ">=3.10"
+dependencies = [
+    "okf-ingest>=0.7.0",
+    "mcp>=1.2",
+]
+keywords = ["okf", "open-knowledge-format", "mcp", "model-context-protocol", "knowledge-graph", "duckdb"]
+
+[project.urls]
+Homepage = "https://github.com/travisjakel/okf-mcp"
+
+[project.scripts]
+okf-mcp = "okf_mcp.server:main"
+
+[tool.setuptools]
+packages = ["okf_mcp"]

okf_mcp-0.1.0/setup.cfg

@@ -0,0 +1,4 @@
+[egg_info]
+tag_build = 
+tag_date = 0
+

okf_mcp-0.1.0/tests/test_okf_mcp.py

@@ -0,0 +1,117 @@
+"""Offline tests: registry/tool logic on a tiny inline bundle, plus an
+in-process MCP handshake (client <-> server over memory streams)."""
+import os
+import sys
+import textwrap
+
+import pytest
+
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), ".."))
+from okf_mcp import registry as R  # noqa: E402
+
+
+def make_bundle(tmp_path):
+    d = tmp_path / "bundle"
+    d.mkdir()
+    (d / "index.md").write_text(textwrap.dedent("""\
+        ---
+        type: Index
+        title: Home
+        ---
+        # Home
+        - [Alpha](alpha.md)
+        - [Beta](beta.md)
+        """), encoding="utf-8")
+    (d / "alpha.md").write_text(textwrap.dedent("""\
+        ---
+        type: Signal
+        title: Alpha
+        description: The alpha concept.
+        ---
+        # Alpha
+        Depends on [Beta](beta.md). Mentions quicksilver.
+        """), encoding="utf-8")
+    (d / "beta.md").write_text(textwrap.dedent("""\
+        ---
+        type: Runbook
+        title: Beta
+        description: The beta concept.
+        ---
+        # Beta
+        Body of beta.
+        """), encoding="utf-8")
+    return str(d)
+
+
+@pytest.fixture()
+def reg(tmp_path):
+    r = R.BundleRegistry()
+    r.add("test", make_bundle(tmp_path))
+    yield r
+    r.close()
+
+
+def test_list_and_search(reg):
+    bundles = R.list_bundles(reg)
+    assert bundles[0]["name"] == "test" and bundles[0]["n_concepts"] == 2
+    hits = R.search(reg, "quicksilver")
+    assert [h["path"] for h in hits] == ["alpha.md"]
+
+
+def test_get_concept_and_context(reg):
+    c = R.get_concept(reg, "alpha.md")
+    assert c["type"] == "Signal" and "quicksilver" in c["body"]
+    ctx = R.context(reg, start="alpha.md", depth=1)
+    assert "Alpha" in ctx["text"] and "beta.md" in ctx["included"]
+    with pytest.raises(ValueError):
+        R.get_concept(reg, "nope.md")
+
+
+def test_impact_and_sql(reg):
+    im = R.impact(reg, "beta.md")
+    assert "alpha.md" in im["inbound"]
+    rows = R.sql(reg, "SELECT count(*) AS n FROM okf_concept WHERE reserved = FALSE")
+    assert rows[0]["n"] == 2
+    with pytest.raises(ValueError):
+        R.sql(reg, "DELETE FROM okf_concept")
+
+
+def test_diff_refresh_doctor(reg, tmp_path):
+    assert R.diff(reg)["identical"] is True
+    # mutate the source dir -> drift shows, refresh clears it
+    (tmp_path / "bundle" / "gamma.md").write_text(
+        "---\ntype: Tool\ntitle: Gamma\n---\n# Gamma\n", encoding="utf-8")
+    d = R.diff(reg)
+    assert d["added"] == ["gamma.md"] and d["identical"] is False
+    reg.refresh()
+    assert R.diff(reg)["identical"] is True
+    rep = R.doctor(reg)
+    assert 0 <= rep["score"] <= 100
+
+
+@pytest.mark.anyio
+async def test_mcp_handshake(tmp_path):
+    """Real MCP round-trip: server + client over in-memory streams."""
+    from mcp.shared.memory import create_connected_server_and_client_session
+    from okf_mcp import server as S
+
+    S.reg.close()
+    S.reg.bundles.clear()
+    S.reg.add("test", make_bundle(tmp_path))
+    try:
+        async with create_connected_server_and_client_session(
+                S.mcp._mcp_server) as session:
+            tools = await session.list_tools()
+            names = {t.name for t in tools.tools}
+            assert {"okf_search", "okf_context", "okf_diff", "okf_doctor"} <= names
+            res = await session.call_tool("okf_search", {"term": "quicksilver"})
+            assert not res.isError
+            assert "alpha.md" in res.content[0].text
+    finally:
+        S.reg.close()
+        S.reg.bundles.clear()
+
+
+@pytest.fixture
+def anyio_backend():
+    return "asyncio"