ohi-sdk 0.17.1__tar.gz

ohi_sdk-0.17.1/LICENSE

@@ -0,0 +1,201 @@
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+   9. Accepting Warranty or Additional Liability. While redistributing
+      the Work or Derivative Works thereof, You may choose to offer,
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+      on Your own behalf and on Your sole responsibility, not on behalf
+      of any other Contributor, and only if You agree to indemnify,
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+
+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "[]"
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+   Copyright 2026 NeverBlink sp. z o.o.
+
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ohi_sdk-0.17.1/PKG-INFO

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+Metadata-Version: 2.5
+Name: ohi-sdk
+Version: 0.17.1
+Summary: Ohi catalog search, publication inspection and artifact retrieval.
+Project-URL: Documentation, https://github.com/NeverBlink-OSS/linkml-scala/blob/main/ohi/README.md
+Project-URL: Source, https://github.com/NeverBlink-OSS/linkml-scala
+Project-URL: Issues, https://github.com/NeverBlink-OSS/linkml-scala/issues
+Author: NeverBlink
+License-Expression: Apache-2.0
+License-File: LICENSE
+Requires-Python: >=3.10
+Requires-Dist: jsonschema[format-nongpl]<5,>=4.26
+Requires-Dist: pydantic<3,>=2.12
+Description-Content-Type: text/markdown
+
+# Ohi SDK
+
+The Ohi SDK lets Python and TypeScript applications search publications, inspect metadata, download selected files and save supplied file selections.
+
+Install on Python 3.10 or later:
+
+```sh
+python -m pip install ohi-sdk
+```
+
+Install for Node 22 or later, or a browser application:
+
+```sh
+npm install @neverblink/ohi
+```
+
+See the [SDK guide](https://github.com/NeverBlink-OSS/linkml-scala/blob/main/ohi/README.md) for usage, browser requirements and API behavior.

ohi_sdk-0.17.1/README.md

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+# Ohi SDK
+
+The Ohi SDK lets Python and TypeScript applications search publications, inspect metadata, download selected files and save supplied file selections.
+
+Install on Python 3.10 or later:
+
+```sh
+python -m pip install ohi-sdk
+```
+
+Install for Node 22 or later, or a browser application:
+
+```sh
+npm install @neverblink/ohi
+```
+
+See the [SDK guide](https://github.com/NeverBlink-OSS/linkml-scala/blob/main/ohi/README.md) for usage, browser requirements and API behavior.

ohi_sdk-0.17.1/pyproject.toml

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+[build-system]
+requires = ["hatchling>=1.27"]
+build-backend = "hatchling.build"
+
+[project]
+readme = "README.md"
+name = "ohi-sdk"
+version = "0.17.1"
+description = "Ohi catalog search, publication inspection and artifact retrieval."
+requires-python = ">=3.10"
+license = "Apache-2.0"
+authors = [{ name = "NeverBlink" }]
+dependencies = ["pydantic>=2.12,<3", "jsonschema[format-nongpl]>=4.26,<5"]
+
+[project.urls]
+Documentation = "https://github.com/NeverBlink-OSS/linkml-scala/blob/main/ohi/README.md"
+Source = "https://github.com/NeverBlink-OSS/linkml-scala"
+Issues = "https://github.com/NeverBlink-OSS/linkml-scala/issues"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/ohi"]

ohi_sdk-0.17.1/src/ohi/__init__.py

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+"""Ohi catalog operations, publication metadata and supplied file locks."""
+
+from .catalog import CatalogClient, CatalogException
+from .generated import Artifact, ArtifactOrigin, Dependency, Format, Publication
+from .generated_config import CatalogConfig
+from .generated_error import CatalogError, CatalogErrorCode, CatalogOperation
+from .generated_lock import ArtifactSelection, Lock, LockedFile
+from .generated_lock_error import LockError, LockErrorCode, LockOperation
+from .generated_search import FacetCount, FacetValueCount, SearchHit, SearchResult
+from .generated_search_request import SearchRequest
+from .publication import decode_publication
+from .lock import LockException, decode_lock, encode_lock, read_lock, write_lock
+
+__all__ = [
+    "Artifact", "ArtifactOrigin", "ArtifactSelection", "CatalogClient", "CatalogConfig", "CatalogError",
+    "CatalogErrorCode", "CatalogException", "CatalogOperation", "Dependency", "FacetCount",
+    "FacetValueCount", "Format", "Lock", "LockedFile", "LockError", "LockErrorCode", "LockException",
+    "LockOperation", "Publication", "SearchHit", "SearchRequest", "SearchResult", "decode_publication",
+    "decode_lock", "encode_lock", "read_lock", "write_lock",
+]

ohi_sdk-0.17.1/src/ohi/catalog-config.schema.json

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+{
+  "$schema": "https://json-schema.org/draft/2020-12/schema",
+  "$id": "https://ohi.neverblink.eu/contracts/catalog-config",
+  "$ref": "#/$defs/CatalogConfig",
+  "$defs": {
+    "CatalogConfig": {
+      "title": "CatalogConfig",
+      "type": "object",
+      "properties": {
+        "search_url": {
+          "title": "search_url",
+          "description": "Complete HTTP search endpoint, including its collection path. Omit both search_url and query_by to use https://api.ohi.dev/search/collections/packages/documents/search. Supply both to select another catalog.",
+          "type": "string",
+          "format": "iri"
+        },
+        "query_by": {
+          "title": "query_by",
+          "description": "Comma-separated indexed fields used for text search. Omit both query_by and search_url to use title,name,description,namespace at ohi.dev. Supply both to select another catalog.",
+          "type": "string",
+          "pattern": "^[\\s\\S]*\\S"
+        },
+        "timeout_ms": {
+          "title": "timeout_ms",
+          "description": "Positive native request timeout in milliseconds. Omitted means 30000.",
+          "type": "integer",
+          "minimum": 1,
+          "maximum": 2147483647
+        }
+      },
+      "additionalProperties": false
+    }
+  },
+  "title": "Catalog connection settings",
+  "description": "Search endpoint and request timeout settings for a catalog client."
+}

ohi_sdk-0.17.1/src/ohi/catalog.py

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+"""Retrieve one catalog page, publication or file through native HTTP."""
+
+import json
+from http.client import HTTPException
+from importlib.resources import files
+from urllib.error import HTTPError, URLError
+from urllib.parse import urlencode, urlsplit
+from urllib.request import HTTPRedirectHandler, Request, build_opener
+
+from jsonschema import Draft202012Validator, FormatError, ValidationError
+
+from .generated import Publication
+from .generated_config import CatalogConfig
+from .generated_error import CatalogError
+from .generated_search import SearchResult
+from .generated_search_request import SearchRequest
+from .publication import decode_publication
+
+
+_validators = {
+    name: Draft202012Validator(
+        json.loads(files(__package__).joinpath(f"{name}.schema.json").read_text(encoding="utf-8")),
+        format_checker=Draft202012Validator.FORMAT_CHECKER,
+    )
+    for name in ("catalog-config", "search-request", "search")
+}
+
+
+class CatalogException(Exception):
+    """Catalog failure with a generated, serializable error record."""
+
+    def __init__(self, error: CatalogError):
+        self.error = error
+        super().__init__(error.message)
+
+
+def _failure(code, operation, message, url: str | None = None, status=None, response_json=None):
+    return CatalogException(CatalogError(
+        code=code, operation=operation, message=message,
+        url=url, status=status, response_json=response_json,
+    ))
+
+
+def _validate_url(url: str, operation, search=False):
+    try:
+        Draft202012Validator.FORMAT_CHECKER.check(url, "uri")
+        parsed = urlsplit(url)
+        if parsed.scheme not in ("http", "https") or not parsed.hostname:
+            raise ValueError("URL must be absolute HTTP(S) with a host")
+        if parsed.username is not None or parsed.password is not None:
+            raise ValueError("URL must not contain credentials")
+        parsed.port
+        if search and ("?" in url or "#" in url):
+            raise ValueError("search_url must not contain a query or fragment")
+    except (ValueError, FormatError) as error:
+        raise _failure("INVALID_INPUT", operation, str(error), url) from error
+
+
+def _decode_search(text, page, per_page):
+    data = json.loads(text)
+    try:
+        if not isinstance(data, dict) or "grouped_hits" in data:
+            raise ValueError("search response must be an ungrouped object")
+        if not isinstance(data["hits"], list):
+            raise ValueError("search response requires a hits array")
+        hits = [hit["document"] for hit in data["hits"]]
+        result = {
+            "hits": hits, "total": data["found"], "page": data["page"],
+            "per_page": data["request_params"]["per_page"],
+            "search_cutoff": data["search_cutoff"],
+        }
+        if "facet_counts" in data:
+            result["facet_counts"] = data["facet_counts"]
+        _validators["search"].validate(result)
+    except (KeyError, TypeError, ValidationError) as error:
+        raise ValueError(f"invalid search response: {error}") from error
+    if result["page"] != page or result["per_page"] != per_page:
+        raise ValueError("response pagination differs from the requested page")
+    if len(hits) > per_page:
+        raise ValueError("response contains more hits than per_page")
+    # JSON Schema accepts integers such as 8.0, while generated fields use StrictInt.
+    for field in ("total", "page", "per_page"):
+        result[field] = int(result[field])
+    for facet in result.get("facet_counts", []):
+        for value in facet["counts"]:
+            value["count"] = int(value["count"])
+    return SearchResult.model_validate(result, extra="ignore")
+
+
+class _NoRedirect(HTTPRedirectHandler):
+    def redirect_request(self, req, fp, code, msg, headers, newurl):
+        return None
+
+
+class CatalogClient:
+    """Synchronous HTTP operations. Omitting both search settings selects ohi.dev."""
+
+    def __init__(self, config: CatalogConfig | None = None):
+        config = CatalogConfig() if config is None else config
+        url = config.search_url
+        try:
+            data = config.model_dump(warnings=False)
+            _validators["catalog-config"].validate(data)
+            if ("search_url" in data) != ("query_by" in data):
+                raise ValueError("search_url and query_by must be supplied together")
+        except (ValueError, ValidationError) as error:
+            raise _failure("INVALID_INPUT", "CONFIGURE", str(error), url) from error
+        if url is not None:
+            _validate_url(url, "CONFIGURE", search=True)
+        self._search_url = (url if url is not None else
+                            "https://api.ohi.dev/search/collections/packages/documents/search")
+        self._query_by = data.get("query_by", "title,name,description,namespace")
+        self._timeout = data.get("timeout_ms", 30000) / 1000
+        self._opener = build_opener(_NoRedirect())
+
+    def search(self, request: SearchRequest) -> SearchResult:
+        url = self._search_url
+        try:
+            params = request.model_dump(warnings=False)
+            _validators["search-request"].validate(params)
+        except (ValueError, ValidationError) as error:
+            raise _failure("INVALID_INPUT", "SEARCH", str(error), url) from error
+        params["page"] = int(params.get("page", 1))
+        params["per_page"] = int(params.get("per_page", 10))
+        if "max_facet_values" in params:
+            params["max_facet_values"] = int(params["max_facet_values"])
+        params["query_by"] = self._query_by
+        body = self._get(url + "?" + urlencode(params), "SEARCH", url)
+        try:
+            return _decode_search(body.decode("utf-8"), params["page"], params["per_page"])
+        except ValueError as error:
+            raise _failure("INVALID_RESPONSE", "SEARCH", str(error), url, 200) from error
+
+    def inspect(self, base_url: str) -> Publication:
+        _validate_url(base_url, "INSPECT")
+        body = self._get(base_url, "INSPECT", base_url)
+        try:
+            return decode_publication(body.decode("utf-8"))
+        except ValueError as error:
+            raise _failure("INVALID_RESPONSE", "INSPECT", str(error), base_url, 200) from error
+
+    def get(self, url: str) -> bytes:
+        _validate_url(url, "GET")
+        return self._get(url, "GET", url)
+
+    def _get(self, url, operation, error_url):
+        status = None
+        try:
+            try:
+                response = self._opener.open(
+                    Request(url, headers={"Accept-Encoding": "identity"}), timeout=self._timeout,
+                )
+            except HTTPError as error:
+                response = error
+            with response:
+                status = response.status
+                if status != 200:
+                    response_json = None
+                    try:
+                        value = json.loads(response.read().decode("utf-8"))
+                        if isinstance(value, dict):
+                            response_json = value
+                    except (OSError, HTTPException, ValueError):
+                        pass  # The known HTTP status takes precedence over body failures.
+                    raise _failure("HTTP_ERROR", operation, f"HTTP status {status}",
+                                   error_url, status, response_json)
+                body = response.read()
+                if response.headers.get("Content-Encoding", "identity").strip().lower() != "identity":
+                    raise _failure("INVALID_RESPONSE", operation, "unsupported HTTP content encoding",
+                                   error_url, status)
+                return body
+        except (OSError, HTTPException) as error:
+            reason = error.reason if isinstance(error, URLError) else error
+            code = "TIMEOUT" if isinstance(reason, TimeoutError) else "CONNECTION_ERROR"
+            raise _failure(code, operation, str(error), error_url, status) from error

ohi_sdk-0.17.1/src/ohi/generated.py

@@ -0,0 +1,133 @@
+# Generated by LinkML-Scala from https://ohi.neverblink.eu/contracts/package
+# DO NOT EDIT.
+from __future__ import annotations
+
+import re
+from datetime import datetime
+from enum import Enum
+from typing import Annotated, Any
+
+from pydantic import BaseModel, BeforeValidator, ConfigDict, Field, StrictInt, model_serializer
+
+
+class LinkMLModel(BaseModel):
+    """Base of the generated classes. Loads and dumps the JSON form of the data, as
+    described by the JSON Schema generated from the same LinkML model."""
+
+    model_config = ConfigDict(
+        extra="forbid",
+        protected_namespaces=(),
+        regex_engine="python-re",
+        serialize_by_alias=True,
+        validate_assignment=True,
+        validate_by_name=True,
+    )
+
+    @model_serializer(mode="wrap")
+    def _skip_none(self, handler: Any) -> Any:
+        # Skip the fields without a value, rather than writing null
+        return {k: v for k, v in handler(self).items() if v is not None}
+
+
+def _iso(pattern: str) -> Any:
+    """Accept a date or time only as ISO 8601 text, as JSON Schema does."""
+    regex = re.compile(pattern)
+
+    def check(value: Any) -> Any:
+        if isinstance(value, (int, float)) or isinstance(value, str) and not regex.match(value):
+            raise ValueError("expected ISO 8601 text")
+        return value
+
+    return BeforeValidator(check)
+
+
+JsonDateTime = Annotated[datetime, _iso(r"^\d{4}-\d{2}-\d{2}[Tt ]")]
+
+
+class ArtifactOrigin(str, Enum):
+    """Origin of published artifact content."""
+
+    UPSTREAM = "UPSTREAM"
+    """File bytes preserved from the upstream publisher."""
+    GENERATED = "GENERATED"
+    """File produced from source ontology content by conversion, import rewriting or other transformations."""
+
+
+class Format(str, Enum):
+    """A combination of ontology language and syntax."""
+
+    owl_turtle = "owl-turtle"
+    """OWL in Turtle syntax."""
+    owl_rdfxml = "owl-rdfxml"
+    """OWL in RDF/XML syntax."""
+    rdfs_turtle = "rdfs-turtle"
+    """RDFS in Turtle syntax."""
+    linkml_yaml = "linkml-yaml"
+    """LinkML in YAML syntax."""
+    ossie_yaml = "ossie-yaml"
+    """Apache Ossie in YAML syntax."""
+
+
+class Artifact(LinkMLModel):
+    """Ontology content in a declared format, with explicitly identified entry files."""
+
+    model_config = ConfigDict(extra="allow")
+
+    format: Format
+    """Ontology language and syntax of the artifact."""
+    origin: ArtifactOrigin
+    """Origin of the artifact content."""
+    roots: list[str] = Field(min_length=1)
+    """Permanent absolute URLs of the entry files from which this artifact's ontology is loaded."""
+    sha256: Annotated[str, Field(pattern=r"^[0-9a-f]{64}(?![\s\S])")]
+    """SHA-256 of the final immutable file bytes, before HTTP content encoding, as exactly 64 lowercase hexadecimal characters."""
+    size_bytes: Annotated[StrictInt, Field(ge=0)]
+    """Byte length of the final immutable artifact file, before HTTP content encoding. Measured from the same bytes as sha256."""
+    url: str
+    """Permanent absolute download URL of an immutable ontology file."""
+
+
+class Dependency(LinkMLModel):
+    """A reference to an exact immutable publication required by this publication."""
+
+    model_config = ConfigDict(extra="allow")
+
+    base_url: str
+    """Permanent absolute URL identifying one exact immutable publication. GET this exact URL returns its publication JSON. Do not append a filename."""
+
+
+class Publication(LinkMLModel):
+    """One immutable release of one ontology, including its metadata, artifacts and dependencies. Package, publication and release refer to the same entity."""
+
+    model_config = ConfigDict(extra="allow")
+
+    artifacts: list[Artifact] = Field(min_length=1)
+    """Available artifacts of this ontology. Each artifact URL occurs once. Multiple artifacts may share a format."""
+    base_url: str
+    """Permanent absolute URL identifying one exact immutable publication. GET this exact URL returns its publication JSON. Do not append a filename."""
+    dependencies: list[Dependency]
+    """Complete set of direct and indirect runtime dependency publications, excluding this publication. Each base_url occurs once. An empty list means this publication has no runtime dependencies."""
+    description: Annotated[str, Field(pattern=r"^[\s\S]*\S")]
+    """Short description of the ontology's domain and intended use."""
+    keywords: list[str]
+    """Keywords describing the ontology's subject. An empty list means no keywords are provided."""
+    licenses: list[Annotated[str, Field(pattern=r"^[\s\S]*\S")]]
+    """Reported license names or standard identifiers such as Apache-2.0. Empty means no information supplied. The list specifies neither AND nor OR combination semantics."""
+    name: Annotated[str, Field(pattern=r"^[\s\S]*\S")]
+    """Short catalog identifier, qualified by namespace. The namespace/name pair identifies the same ontology across releases. URLs must not be derived from this identifier."""
+    namespace: Annotated[str, Field(pattern=r"^[\s\S]*\S")]
+    """Namespace qualifying the ontology name, such as w3c in w3c/prov-o."""
+    namespace_iri: str | None = None
+    """Optional preferred primary RDF term namespace. Preserve the complete value including any trailing delimiter. Not the catalog namespace and not necessarily the ontology IRI."""
+    preferred_prefix: Annotated[str, Field(pattern=r"^[^\s:]+(?![\s\S])")] | None = None
+    """Optional abbreviation for namespace_iri, without whitespace or a colon. Requires namespace_iri. This constraint does not certify prefix syntax for every ontology language."""
+    published_at: JsonDateTime
+    """First successful Hub publication time for this immutable release. Backend emits UTC date-time text with Z. Consumers accept timezone-bearing RFC 3339 text. Fixed for the lifetime of this publication. Not an upstream release date."""
+    publisher: Annotated[str, Field(pattern=r"^[\s\S]*\S")]
+    """Name of the upstream person or organization responsible for publishing the ontology. Not inferred from catalog namespace."""
+    schema_version: Annotated[StrictInt, Field(ge=2, le=2)]
+    """Metadata contract revision, independent of the ontology's version."""
+    title: Annotated[str, Field(pattern=r"^[\s\S]*\S")]
+    """Display title of the ontology."""
+    version: Annotated[str, Field(pattern=r"^[\s\S]*\S")]
+    """Complete publication version label, including amendments."""