odm-api 0.0.1__tar.gz

odm-api-0.0.1/PKG-INFO

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+Metadata-Version: 2.1
+Name: odm-api
+Version: 0.0.1
+Summary: Tasks API
+Home-page: 
+Author: OpenAPI Generator community
+Author-email: team@openapitools.org
+Keywords: OpenAPI,OpenAPI-Generator,Tasks API
+Description-Content-Type: text/markdown
+Requires-Dist: urllib3<2.1.0,>=1.25.3
+Requires-Dist: python-dateutil
+Requires-Dist: pydantic>=2
+Requires-Dist: typing-extensions>=4.7.1
+
+    These API endpoints serve to work with asynchronous tasks. 
+    

odm-api-0.0.1/README.md

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+# odm-api
+These API endpoints serve to work with asynchronous tasks.
+
+
+This Python package is automatically generated by the [OpenAPI Generator](https://openapi-generator.tech) project:
+
+- API version: default-released
+- Package version: 0.0.1
+- Build package: org.openapitools.codegen.languages.PythonClientCodegen
+
+## Requirements.
+
+Python 3.7+
+
+## Installation & Usage
+### pip install
+
+If the python package is hosted on a repository, you can install directly using:
+
+```sh
+pip install git+https://github.com/genestack/odm-openapi.git
+```
+(you may need to run `pip` with root permission: `sudo pip install git+https://github.com/genestack/odm-openapi.git`)
+
+Then import the package:
+```python
+import odm_api
+```
+
+### Setuptools
+
+Install via [Setuptools](http://pypi.python.org/pypi/setuptools).
+
+```sh
+python setup.py install --user
+```
+(or `sudo python setup.py install` to install the package for all users)
+
+Then import the package:
+```python
+import odm_api
+```
+
+### Tests
+
+Execute `pytest` to run the tests.
+
+## Getting Started
+
+Please follow the [installation procedure](#installation--usage) and then run the following:
+
+```python
+
+import odm_api
+from odm_api.rest import ApiException
+from pprint import pprint
+
+# Defining the host is optional and defaults to http://localhost
+# See configuration.py for a list of all supported configuration parameters.
+configuration = odm_api.Configuration(
+    host = "http://localhost"
+)
+
+# The client must configure the authentication and authorization parameters
+# in accordance with the API server security policy.
+# Examples for each auth method are provided below, use the example that
+# satisfies your auth use case.
+
+# Configure API key authorization: Access-token
+configuration.api_key['Access-token'] = os.environ["API_KEY"]
+
+# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
+# configuration.api_key_prefix['Access-token'] = 'Bearer'
+
+# Configure API key authorization: Genestack-API-Token
+configuration.api_key['Genestack-API-Token'] = os.environ["API_KEY"]
+
+# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
+# configuration.api_key_prefix['Genestack-API-Token'] = 'Bearer'
+
+
+# Enter a context with an instance of the API client
+with odm_api.ApiClient(configuration) as api_client:
+    # Create an instance of the API class
+    api_instance = odm_api.DataImportJobsApi(api_client)
+    allow_dups = False # bool | Load duplicate data: the data from the links has already been previously loaded into ODM, and for **testing purposes**, you need to load this data again. (optional) (default to False)
+    body = odm_api.ImportExpressionSignalRunRequest() # ImportExpressionSignalRunRequest |  (optional)
+
+    try:
+        # Import any tabular data from TSV or GCT files
+        api_response = api_instance.start_import_expression(allow_dups=allow_dups, body=body)
+        print("The response of DataImportJobsApi->start_import_expression:\n")
+        pprint(api_response)
+    except ApiException as e:
+        print("Exception when calling DataImportJobsApi->start_import_expression: %s\n" % e)
+
+```
+
+## Documentation for API Endpoints
+
+All URIs are relative to *http://localhost*
+
+Class | Method | HTTP request | Description
+------------ | ------------- | ------------- | -------------
+*DataImportJobsApi* | [**start_import_expression**](docs/DataImportJobsApi.md#start_import_expression) | **POST** /api/v1/jobs/import/expression | Import any tabular data from TSV or GCT files
+*DataImportJobsApi* | [**start_import_flow_cytometry**](docs/DataImportJobsApi.md#start_import_flow_cytometry) | **POST** /api/v1/jobs/import/flow-cytometry | Import flow-cytometry data and metadata from FACS and TSV files
+*DataImportJobsApi* | [**start_import_libraries**](docs/DataImportJobsApi.md#start_import_libraries) | **POST** /api/v1/jobs/import/libraries | Import a group of library metadata objects from a TSV file
+*DataImportJobsApi* | [**start_import_preparations**](docs/DataImportJobsApi.md#start_import_preparations) | **POST** /api/v1/jobs/import/preparations | Import a group of preparation metadata objects from a TSV file
+*DataImportJobsApi* | [**start_import_samples**](docs/DataImportJobsApi.md#start_import_samples) | **POST** /api/v1/jobs/import/samples | Import a group of sample metadata objects from a TSV file
+*DataImportJobsApi* | [**start_import_study**](docs/DataImportJobsApi.md#start_import_study) | **POST** /api/v1/jobs/import/study | Import study metadata from a TSV file
+*DataImportJobsApi* | [**start_import_variant**](docs/DataImportJobsApi.md#start_import_variant) | **POST** /api/v1/jobs/import/variant | Import variation data and metadata from VCF and TSV files
+*ExpressionSPoTAsCuratorApi* | [**add_expression_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#add_expression_as_curator) | **POST** /api/v1/as-curator/expressions/gct | Create multiple new objects from a multi-row data file with optional supplied metadata
+*ExpressionSPoTAsCuratorApi* | [**delete_expression_group_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#delete_expression_group_as_curator) | **DELETE** /api/v1/as-curator/expressions/group/{id} | Delete the object
+*ExpressionSPoTAsCuratorApi* | [**get_expression_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#get_expression_as_curator) | **GET** /api/v1/as-curator/expressions/{id} | Retrieve a single expression object by ID (accession)
+*ExpressionSPoTAsCuratorApi* | [**get_expression_by_version_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#get_expression_by_version_as_curator) | **GET** /api/v1/as-curator/expressions/{id}/versions/{version} | Retrieve a single expression object by ID (accession)
+*ExpressionSPoTAsCuratorApi* | [**get_expression_data_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#get_expression_data_as_curator) | **GET** /api/v1/as-curator/expressions | Retrieve multiple expression data and metadata objects
+*ExpressionSPoTAsCuratorApi* | [**get_expression_group_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#get_expression_group_as_curator) | **GET** /api/v1/as-curator/expressions/group/{id} | Retrieve a single group object by ID (accession)
+*ExpressionSPoTAsCuratorApi* | [**get_expression_group_by_run_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#get_expression_group_by_run_as_curator) | **GET** /api/v1/as-curator/expressions/group/by/run/{id} | Retrieve a single group object by run ID (accession)
+*ExpressionSPoTAsCuratorApi* | [**get_expression_versions_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#get_expression_versions_as_curator) | **GET** /api/v1/as-curator/expressions/{id}/versions | Retrieve a list of object versions by ID
+*ExpressionSPoTAsCuratorApi* | [**search_expression_groups_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#search_expression_groups_as_curator) | **GET** /api/v1/as-curator/expressions/group | Retrieve groups that match a query
+*ExpressionSPoTAsCuratorApi* | [**search_expression_runs_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#search_expression_runs_as_curator) | **GET** /api/v1/as-curator/expressions/runs/by/group/{id} | Retrieve run objects related to the given group
+*ExpressionSPoTAsCuratorApi* | [**update_expression_run_as_curator**](docs/ExpressionSPoTAsCuratorApi.md#update_expression_run_as_curator) | **PATCH** /api/v1/as-curator/expressions/{id} | Update object metadata
+*ExpressionSPoTAsUserApi* | [**get_expression_as_user**](docs/ExpressionSPoTAsUserApi.md#get_expression_as_user) | **GET** /api/v1/as-user/expressions/{id} | Retrieve a single expression object by ID (accession)
+*ExpressionSPoTAsUserApi* | [**get_expression_by_version_as_user**](docs/ExpressionSPoTAsUserApi.md#get_expression_by_version_as_user) | **GET** /api/v1/as-user/expressions/{id}/versions/{version} | Retrieve a single expression object by ID (accession)
+*ExpressionSPoTAsUserApi* | [**get_expression_data_as_user**](docs/ExpressionSPoTAsUserApi.md#get_expression_data_as_user) | **GET** /api/v1/as-user/expressions | Retrieve multiple expression data and metadata objects
+*ExpressionSPoTAsUserApi* | [**get_expression_group_as_user**](docs/ExpressionSPoTAsUserApi.md#get_expression_group_as_user) | **GET** /api/v1/as-user/expressions/group/{id} | Retrieve a single group object by ID (accession)
+*ExpressionSPoTAsUserApi* | [**get_expression_group_by_run_as_user**](docs/ExpressionSPoTAsUserApi.md#get_expression_group_by_run_as_user) | **GET** /api/v1/as-user/expressions/group/by/run/{id} | Retrieve a single group object by run ID (accession)
+*ExpressionSPoTAsUserApi* | [**get_expression_versions_as_user**](docs/ExpressionSPoTAsUserApi.md#get_expression_versions_as_user) | **GET** /api/v1/as-user/expressions/{id}/versions | Retrieve a list of object versions by ID
+*ExpressionSPoTAsUserApi* | [**search_expression_groups_as_user**](docs/ExpressionSPoTAsUserApi.md#search_expression_groups_as_user) | **GET** /api/v1/as-user/expressions/group | Retrieve groups that match a query
+*ExpressionSPoTAsUserApi* | [**search_expression_runs_as_user**](docs/ExpressionSPoTAsUserApi.md#search_expression_runs_as_user) | **GET** /api/v1/as-user/expressions/runs/by/group/{id} | Retrieve run objects related to the given group
+*ExpressionIntegrationAsCuratorApi* | [**create_expression_group_library_group_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#create_expression_group_library_group_link_as_curator) | **POST** /api/v1/as-curator/integration/link/expression/group/{sourceId}/to/library/group/{targetId} | Create a link between a group of expression objects and a group of library objects
+*ExpressionIntegrationAsCuratorApi* | [**create_expression_group_preparation_group_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#create_expression_group_preparation_group_link_as_curator) | **POST** /api/v1/as-curator/integration/link/expression/group/{sourceId}/to/preparation/group/{targetId} | Create a link between a group of expression objects and a group of preparation objects
+*ExpressionIntegrationAsCuratorApi* | [**create_expression_group_sample_group_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#create_expression_group_sample_group_link_as_curator) | **POST** /api/v1/as-curator/integration/link/expression/group/{sourceId}/to/sample/group/{targetId} | Create a link between a group of expression objects and a group of sample objects
+*ExpressionIntegrationAsCuratorApi* | [**create_expression_library_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#create_expression_library_link_as_curator) | **POST** /api/v1/as-curator/integration/link/expression/{sourceId}/to/library/{targetId} | Create a link between an expression object and a library
+*ExpressionIntegrationAsCuratorApi* | [**create_expression_preparation_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#create_expression_preparation_link_as_curator) | **POST** /api/v1/as-curator/integration/link/expression/{sourceId}/to/preparation/{targetId} | Create a link between an expression object and a preparation
+*ExpressionIntegrationAsCuratorApi* | [**create_expression_sample_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#create_expression_sample_link_as_curator) | **POST** /api/v1/as-curator/integration/link/expression/{sourceId}/to/sample/{targetId} | Create a link between an expression object and a sample
+*ExpressionIntegrationAsCuratorApi* | [**delete_expression_group_library_group_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#delete_expression_group_library_group_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/expression/group/{sourceId}/to/library/group/{targetId} | Delete link between a group of expression objects and a group of library objects
+*ExpressionIntegrationAsCuratorApi* | [**delete_expression_group_preparation_group_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#delete_expression_group_preparation_group_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/expression/group/{sourceId}/to/preparation/group/{targetId} | Delete link between a group of expression objects and a group of preparation objects
+*ExpressionIntegrationAsCuratorApi* | [**delete_expression_group_sample_group_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#delete_expression_group_sample_group_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/expression/group/{sourceId}/to/sample/group/{targetId} | Delete link between a group of expression objects and a group of sample objects
+*ExpressionIntegrationAsCuratorApi* | [**delete_expression_library_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#delete_expression_library_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/expression/{sourceId}/to/library/{targetId} | Delete link between an expression object and a library
+*ExpressionIntegrationAsCuratorApi* | [**delete_expression_preparation_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#delete_expression_preparation_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/expression/{sourceId}/to/preparation/{targetId} | Delete link between an expression object and a preparation
+*ExpressionIntegrationAsCuratorApi* | [**delete_expression_sample_link_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#delete_expression_sample_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/expression/{sourceId}/to/sample/{targetId} | Delete link between an expression object and a sample
+*ExpressionIntegrationAsCuratorApi* | [**get_expression_by_library_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#get_expression_by_library_as_curator) | **GET** /api/v1/as-curator/integration/link/expression/by/library/{id} | Retrieve expression run-level data by querying related library ID (accession)
+*ExpressionIntegrationAsCuratorApi* | [**get_expression_by_preparation**](docs/ExpressionIntegrationAsCuratorApi.md#get_expression_by_preparation) | **GET** /api/v1/as-curator/integration/link/expression/by/preparation/{id} | Retrieve expression run-level data by querying related preparation ID (accession)
+*ExpressionIntegrationAsCuratorApi* | [**get_expression_by_sample_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#get_expression_by_sample_as_curator) | **GET** /api/v1/as-curator/integration/link/expression/by/sample/{id} | Retrieve expression run-level data by querying related sample ID (accession)
+*ExpressionIntegrationAsCuratorApi* | [**get_expression_groups_by_study_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#get_expression_groups_by_study_as_curator) | **GET** /api/v1/as-curator/integration/link/expression/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*ExpressionIntegrationAsCuratorApi* | [**get_expression_run_to_library_pairs_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#get_expression_run_to_library_pairs_as_curator) | **GET** /api/v1/as-curator/integration/link/expression/run-to-libraries/by/group/{id} | Retrieve run-library pairs by group id. Pagination is based on unique runs, not unique pairs.
+*ExpressionIntegrationAsCuratorApi* | [**get_expression_run_to_preparation_pairs_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#get_expression_run_to_preparation_pairs_as_curator) | **GET** /api/v1/as-curator/integration/link/expression/run-to-preparations/by/group/{id} | Retrieve run-preparation pairs by group id. Pagination is based on unique runs, not unique pairs.
+*ExpressionIntegrationAsCuratorApi* | [**get_expression_run_to_sample_pairs_as_curator**](docs/ExpressionIntegrationAsCuratorApi.md#get_expression_run_to_sample_pairs_as_curator) | **GET** /api/v1/as-curator/integration/link/expression/run-to-samples/by/group/{id} | Retrieve run-sample pairs by group id. Pagination is based on unique runs, not unique pairs.
+*ExpressionIntegrationAsUserApi* | [**get_expression_by_library_as_user**](docs/ExpressionIntegrationAsUserApi.md#get_expression_by_library_as_user) | **GET** /api/v1/as-user/integration/link/expression/by/library/{id} | Retrieve expression run-level data by querying related library ID (accession)
+*ExpressionIntegrationAsUserApi* | [**get_expression_by_preparation_as_user**](docs/ExpressionIntegrationAsUserApi.md#get_expression_by_preparation_as_user) | **GET** /api/v1/as-user/integration/link/expression/by/preparation/{id} | Retrieve expression run-level data by querying related preparation ID (accession)
+*ExpressionIntegrationAsUserApi* | [**get_expression_by_sample_as_user**](docs/ExpressionIntegrationAsUserApi.md#get_expression_by_sample_as_user) | **GET** /api/v1/as-user/integration/link/expression/by/sample/{id} | Retrieve expression run-level data by querying related sample ID (accession)
+*ExpressionIntegrationAsUserApi* | [**get_expression_groups_by_study_as_user**](docs/ExpressionIntegrationAsUserApi.md#get_expression_groups_by_study_as_user) | **GET** /api/v1/as-user/integration/link/expression/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*ExpressionIntegrationAsUserApi* | [**get_expression_run_to_library_pairs_as_user**](docs/ExpressionIntegrationAsUserApi.md#get_expression_run_to_library_pairs_as_user) | **GET** /api/v1/as-user/integration/link/expression/run-to-libraries/by/group/{id} | Retrieve run-library pairs by group id. Pagination is based on unique runs, not unique pairs.
+*ExpressionIntegrationAsUserApi* | [**get_expression_run_to_preparation_pairs_as_user**](docs/ExpressionIntegrationAsUserApi.md#get_expression_run_to_preparation_pairs_as_user) | **GET** /api/v1/as-user/integration/link/expression/run-to-preparations/by/group/{id} | Retrieve run-preparation pairs by group id. Pagination is based on unique runs, not unique pairs.
+*ExpressionIntegrationAsUserApi* | [**get_expression_run_to_sample_pairs_as_user**](docs/ExpressionIntegrationAsUserApi.md#get_expression_run_to_sample_pairs_as_user) | **GET** /api/v1/as-user/integration/link/expression/run-to-samples/by/group/{id} | Retrieve run-sample pairs by group id. Pagination is based on unique runs, not unique pairs.
+*FlowCytometrySPoTAsCuratorApi* | [**add_flow_cytometry_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#add_flow_cytometry_as_curator) | **POST** /api/v1/as-curator/flow-cytometries/facs | Create multiple new objects from a multi-row data file with optional supplied metadata
+*FlowCytometrySPoTAsCuratorApi* | [**delete_flow_cytometry_group_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#delete_flow_cytometry_group_as_curator) | **DELETE** /api/v1/as-curator/flow-cytometries/group/{id} | Delete the object
+*FlowCytometrySPoTAsCuratorApi* | [**get_flow_cytometry_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#get_flow_cytometry_as_curator) | **GET** /api/v1/as-curator/flow-cytometries/{id} | Retrieve a single sample flow cytometry by ID (accession)
+*FlowCytometrySPoTAsCuratorApi* | [**get_flow_cytometry_by_version_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#get_flow_cytometry_by_version_as_curator) | **GET** /api/v1/as-curator/flow-cytometries/{id}/versions/{version} | Retrieve a single sample flow cytometry by ID (accession)
+*FlowCytometrySPoTAsCuratorApi* | [**get_flow_cytometry_data_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#get_flow_cytometry_data_as_curator) | **GET** /api/v1/as-curator/flow-cytometries | Retrieve multiple flow cytometry data and metadata objects
+*FlowCytometrySPoTAsCuratorApi* | [**get_flow_cytometry_group_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#get_flow_cytometry_group_as_curator) | **GET** /api/v1/as-curator/flow-cytometries/group/{id} | Retrieve a single group object by ID (accession)
+*FlowCytometrySPoTAsCuratorApi* | [**get_flow_cytometry_group_by_run_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#get_flow_cytometry_group_by_run_as_curator) | **GET** /api/v1/as-curator/flow-cytometries/group/by/run/{id} | Retrieve a single group object by run ID (accession)
+*FlowCytometrySPoTAsCuratorApi* | [**get_flow_cytometry_versions_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#get_flow_cytometry_versions_as_curator) | **GET** /api/v1/as-curator/flow-cytometries/{id}/versions | Retrieve a list of object versions by ID
+*FlowCytometrySPoTAsCuratorApi* | [**search_flow_cytometry_groups_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#search_flow_cytometry_groups_as_curator) | **GET** /api/v1/as-curator/flow-cytometries/group | Retrieve groups that match a query
+*FlowCytometrySPoTAsCuratorApi* | [**search_flow_cytometry_runs_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#search_flow_cytometry_runs_as_curator) | **GET** /api/v1/as-curator/flow-cytometries/runs/by/group/{id} | Retrieve run objects related to the given group
+*FlowCytometrySPoTAsCuratorApi* | [**update_flow_cytometry_as_curator**](docs/FlowCytometrySPoTAsCuratorApi.md#update_flow_cytometry_as_curator) | **PATCH** /api/v1/as-curator/flow-cytometries/{id} | Update object metadata
+*FlowCytometrySPoTAsUserApi* | [**get_flow_cytometry_as_user**](docs/FlowCytometrySPoTAsUserApi.md#get_flow_cytometry_as_user) | **GET** /api/v1/as-user/flow-cytometries/{id} | Retrieve a single sample flow cytometry by ID (accession)
+*FlowCytometrySPoTAsUserApi* | [**get_flow_cytometry_by_version_as_user**](docs/FlowCytometrySPoTAsUserApi.md#get_flow_cytometry_by_version_as_user) | **GET** /api/v1/as-user/flow-cytometries/{id}/versions/{version} | Retrieve a single sample flow cytometry by ID (accession)
+*FlowCytometrySPoTAsUserApi* | [**get_flow_cytometry_data_as_user**](docs/FlowCytometrySPoTAsUserApi.md#get_flow_cytometry_data_as_user) | **GET** /api/v1/as-user/flow-cytometries | Retrieve multiple flow cytometry data and metadata objects
+*FlowCytometrySPoTAsUserApi* | [**get_flow_cytometry_group_as_user**](docs/FlowCytometrySPoTAsUserApi.md#get_flow_cytometry_group_as_user) | **GET** /api/v1/as-user/flow-cytometries/group/{id} | Retrieve a single group object by ID (accession)
+*FlowCytometrySPoTAsUserApi* | [**get_flow_cytometry_group_by_run_as_user**](docs/FlowCytometrySPoTAsUserApi.md#get_flow_cytometry_group_by_run_as_user) | **GET** /api/v1/as-user/flow-cytometries/group/by/run/{id} | Retrieve a single group object by run ID (accession)
+*FlowCytometrySPoTAsUserApi* | [**get_flow_cytometry_versions_as_user**](docs/FlowCytometrySPoTAsUserApi.md#get_flow_cytometry_versions_as_user) | **GET** /api/v1/as-user/flow-cytometries/{id}/versions | Retrieve a list of object versions by ID
+*FlowCytometrySPoTAsUserApi* | [**search_flow_cytometry_groups_as_user**](docs/FlowCytometrySPoTAsUserApi.md#search_flow_cytometry_groups_as_user) | **GET** /api/v1/as-user/flow-cytometries/group | Retrieve groups that match a query
+*FlowCytometrySPoTAsUserApi* | [**search_flow_cytometry_runs_as_user**](docs/FlowCytometrySPoTAsUserApi.md#search_flow_cytometry_runs_as_user) | **GET** /api/v1/as-user/flow-cytometries/runs/by/group/{id} | Retrieve run objects related to the given group
+*FlowCytometryIntegrationAsCuratorApi* | [**create_flow_cytometry_group_sample_group_link_as_curator**](docs/FlowCytometryIntegrationAsCuratorApi.md#create_flow_cytometry_group_sample_group_link_as_curator) | **POST** /api/v1/as-curator/integration/link/flow-cytometry/group/{sourceId}/to/sample/group/{targetId} | Create a link between a group of flow-cytometry objects and a group of sample objects
+*FlowCytometryIntegrationAsCuratorApi* | [**create_flow_cytometry_sample_link_as_curator**](docs/FlowCytometryIntegrationAsCuratorApi.md#create_flow_cytometry_sample_link_as_curator) | **POST** /api/v1/as-curator/integration/link/flow-cytometry/{sourceId}/to/sample/{targetId} | Create a link between a flow-cytometry object and a sample
+*FlowCytometryIntegrationAsCuratorApi* | [**delete_flow_cytometry_group_sample_group_link_as_curator**](docs/FlowCytometryIntegrationAsCuratorApi.md#delete_flow_cytometry_group_sample_group_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/flow-cytometry/group/{sourceId}/to/sample/group/{targetId} | Delete link between a group of flow-cytometry objects and a group of sample objects
+*FlowCytometryIntegrationAsCuratorApi* | [**delete_flow_cytometry_sample_link_as_curator**](docs/FlowCytometryIntegrationAsCuratorApi.md#delete_flow_cytometry_sample_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/flow-cytometry/{sourceId}/to/sample/{targetId} | Delete link between a flow-cytometry object and a sample
+*FlowCytometryIntegrationAsCuratorApi* | [**get_flow_cytometry_by_sample_as_curator**](docs/FlowCytometryIntegrationAsCuratorApi.md#get_flow_cytometry_by_sample_as_curator) | **GET** /api/v1/as-curator/integration/link/flow-cytometry/by/sample/{id} | Retrieve flow cytometry run-level data by querying related sample ID (accession)
+*FlowCytometryIntegrationAsCuratorApi* | [**get_flow_cytometry_groups_by_study_as_curator**](docs/FlowCytometryIntegrationAsCuratorApi.md#get_flow_cytometry_groups_by_study_as_curator) | **GET** /api/v1/as-curator/integration/link/flow-cytometry/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*FlowCytometryIntegrationAsCuratorApi* | [**get_flow_cytometry_run_to_sample_pairs_as_curator**](docs/FlowCytometryIntegrationAsCuratorApi.md#get_flow_cytometry_run_to_sample_pairs_as_curator) | **GET** /api/v1/as-curator/integration/link/flow-cytometry/run-to-samples/by/group/{id} | Retrieve run-sample pairs by group id. Pagination is based on unique runs, not unique pairs.
+*FlowCytometryIntegrationAsUserApi* | [**get_flow_cytometry_by_sample_as_user**](docs/FlowCytometryIntegrationAsUserApi.md#get_flow_cytometry_by_sample_as_user) | **GET** /api/v1/as-user/integration/link/flow-cytometry/by/sample/{id} | Retrieve flow cytometry run-level data by querying related sample ID (accession)
+*FlowCytometryIntegrationAsUserApi* | [**get_flow_cytometry_groups_by_study_as_user**](docs/FlowCytometryIntegrationAsUserApi.md#get_flow_cytometry_groups_by_study_as_user) | **GET** /api/v1/as-user/integration/link/flow-cytometry/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*FlowCytometryIntegrationAsUserApi* | [**get_flow_cytometry_run_to_sample_pairs_as_user**](docs/FlowCytometryIntegrationAsUserApi.md#get_flow_cytometry_run_to_sample_pairs_as_user) | **GET** /api/v1/as-user/integration/link/flow-cytometry/run-to-samples/by/group/{id} | Retrieve run-sample pairs by group id. Pagination is based on unique runs, not unique pairs.
+*GroupsApi* | [**create_group**](docs/GroupsApi.md#create_group) | **POST** /api/v1/scim/Groups | Add a new user group
+*GroupsApi* | [**delete_group**](docs/GroupsApi.md#delete_group) | **DELETE** /api/v1/scim/Groups/{id} | Delete a group
+*GroupsApi* | [**find_groups**](docs/GroupsApi.md#find_groups) | **GET** /api/v1/scim/Groups | Retrieve a list of available groups
+*GroupsApi* | [**get_group**](docs/GroupsApi.md#get_group) | **GET** /api/v1/scim/Groups/{id} | Retrieve a group by id
+*GroupsApi* | [**patch_group**](docs/GroupsApi.md#patch_group) | **PATCH** /api/v1/scim/Groups/{id} | Update a group
+*JobOperationsApi* | [**info**](docs/JobOperationsApi.md#info) | **GET** /api/v1/jobs/{jobExecId}/info | get information about one particular job execution
+*JobOperationsApi* | [**output**](docs/JobOperationsApi.md#output) | **GET** /api/v1/jobs/{jobExecId}/output | retrieve job output (result)
+*JobOperationsApi* | [**restart**](docs/JobOperationsApi.md#restart) | **PUT** /api/v1/jobs/{jobExecId}/restart | restart stopped (failed) job
+*JobOperationsApi* | [**stop**](docs/JobOperationsApi.md#stop) | **PUT** /api/v1/jobs/{jobExecId}/stop | stop running job
+*LibrarySPoTAsCuratorApi* | [**add_libraries_as_curator**](docs/LibrarySPoTAsCuratorApi.md#add_libraries_as_curator) | **POST** /api/v1/as-curator/libraries | Add new library object
+*LibrarySPoTAsCuratorApi* | [**delete_library_as_curator**](docs/LibrarySPoTAsCuratorApi.md#delete_library_as_curator) | **DELETE** /api/v1/as-curator/libraries/{id} | Delete a library object
+*LibrarySPoTAsCuratorApi* | [**delete_library_group_as_curator**](docs/LibrarySPoTAsCuratorApi.md#delete_library_group_as_curator) | **DELETE** /api/v1/as-curator/libraries/group/{id} | Delete a library group with all related library objects
+*LibrarySPoTAsCuratorApi* | [**get_libraries_by_group_as_curator**](docs/LibrarySPoTAsCuratorApi.md#get_libraries_by_group_as_curator) | **GET** /api/v1/as-curator/libraries/by/group/{id} | Retrieve libraries related to the given group
+*LibrarySPoTAsCuratorApi* | [**get_library_as_curator**](docs/LibrarySPoTAsCuratorApi.md#get_library_as_curator) | **GET** /api/v1/as-curator/libraries/{id} | Retrieve a single library object by ID (accession)
+*LibrarySPoTAsCuratorApi* | [**get_library_by_version_as_curator**](docs/LibrarySPoTAsCuratorApi.md#get_library_by_version_as_curator) | **GET** /api/v1/as-curator/libraries/{id}/versions/{version} | Retrieve a single library object by ID (accession)
+*LibrarySPoTAsCuratorApi* | [**get_library_versions_as_curator**](docs/LibrarySPoTAsCuratorApi.md#get_library_versions_as_curator) | **GET** /api/v1/as-curator/libraries/{id}/versions | Retrieve a list of object versions by ID
+*LibrarySPoTAsCuratorApi* | [**search_libraries_as_curator**](docs/LibrarySPoTAsCuratorApi.md#search_libraries_as_curator) | **GET** /api/v1/as-curator/libraries | List or search for library metadata objects
+*LibrarySPoTAsCuratorApi* | [**update_library_as_curator**](docs/LibrarySPoTAsCuratorApi.md#update_library_as_curator) | **PATCH** /api/v1/as-curator/libraries/{id} | Update a library object
+*LibrarySPoTAsUserApi* | [**get_libraries_by_group_as_user**](docs/LibrarySPoTAsUserApi.md#get_libraries_by_group_as_user) | **GET** /api/v1/as-user/libraries/by/group/{id} | Retrieve libraries related to the given group
+*LibrarySPoTAsUserApi* | [**get_library_as_user**](docs/LibrarySPoTAsUserApi.md#get_library_as_user) | **GET** /api/v1/as-user/libraries/{id} | Retrieve a single library object by ID (accession)
+*LibrarySPoTAsUserApi* | [**get_library_by_version_as_user**](docs/LibrarySPoTAsUserApi.md#get_library_by_version_as_user) | **GET** /api/v1/as-user/libraries/{id}/versions/{version} | Retrieve a single library object by ID (accession)
+*LibrarySPoTAsUserApi* | [**get_library_versions_as_user**](docs/LibrarySPoTAsUserApi.md#get_library_versions_as_user) | **GET** /api/v1/as-user/libraries/{id}/versions | Retrieve a list of object versions by ID
+*LibrarySPoTAsUserApi* | [**search_libraries_as_user**](docs/LibrarySPoTAsUserApi.md#search_libraries_as_user) | **GET** /api/v1/as-user/libraries | List or search for library metadata objects
+*LibraryIntegrationAsCuratorApi* | [**create_library_group_sample_group_link_as_curator**](docs/LibraryIntegrationAsCuratorApi.md#create_library_group_sample_group_link_as_curator) | **POST** /api/v1/as-curator/integration/link/library/group/{sourceId}/to/sample/group/{targetId} | Create links between samples and libraries
+*LibraryIntegrationAsCuratorApi* | [**create_library_sample_link_as_curator**](docs/LibraryIntegrationAsCuratorApi.md#create_library_sample_link_as_curator) | **POST** /api/v1/as-curator/integration/link/library/{sourceId}/to/sample/{targetId} | Create a link between a library and a sample
+*LibraryIntegrationAsCuratorApi* | [**delete_library_group_sample_group_link_as_curator**](docs/LibraryIntegrationAsCuratorApi.md#delete_library_group_sample_group_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/library/group/{sourceId}/to/sample/group/{targetId} | Delete links between samples and libraries related to the specified group
+*LibraryIntegrationAsCuratorApi* | [**delete_library_sample_link_as_curator**](docs/LibraryIntegrationAsCuratorApi.md#delete_library_sample_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/library/{sourceId}/to/sample/{targetId} | Delete a link between a library and a sample
+*LibraryIntegrationAsCuratorApi* | [**get_libraries_by_samples_as_curator**](docs/LibraryIntegrationAsCuratorApi.md#get_libraries_by_samples_as_curator) | **GET** /api/v1/as-curator/integration/link/libraries/by/samples | Retrieve library metadata by querying related samples
+*LibraryIntegrationAsCuratorApi* | [**get_library_by_sample_as_curator**](docs/LibraryIntegrationAsCuratorApi.md#get_library_by_sample_as_curator) | **GET** /api/v1/as-curator/integration/link/library/by/sample/{id} | Retrieve library metadata by querying related sample ID (accession)
+*LibraryIntegrationAsCuratorApi* | [**get_library_groups_by_study_as_curator**](docs/LibraryIntegrationAsCuratorApi.md#get_library_groups_by_study_as_curator) | **GET** /api/v1/as-curator/integration/link/library/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*LibraryIntegrationAsCuratorApi* | [**get_library_links_to_samples_as_curator**](docs/LibraryIntegrationAsCuratorApi.md#get_library_links_to_samples_as_curator) | **GET** /api/v1/as-curator/integration/link/library/libraries-to-samples/by/group/{id} | Retrieve library-samples pairs by group id. Pagination is based on unique libraries, not unique pairs.
+*LibraryIntegrationAsUserApi* | [**get_libraries_by_samples_as_user**](docs/LibraryIntegrationAsUserApi.md#get_libraries_by_samples_as_user) | **GET** /api/v1/as-user/integration/link/libraries/by/samples | Retrieve library metadata by querying related samples
+*LibraryIntegrationAsUserApi* | [**get_library_by_sample_as_user**](docs/LibraryIntegrationAsUserApi.md#get_library_by_sample_as_user) | **GET** /api/v1/as-user/integration/link/library/by/sample/{id} | Retrieve library metadata by querying related sample ID (accession)
+*LibraryIntegrationAsUserApi* | [**get_library_groups_by_study_as_user**](docs/LibraryIntegrationAsUserApi.md#get_library_groups_by_study_as_user) | **GET** /api/v1/as-user/integration/link/library/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*LibraryIntegrationAsUserApi* | [**get_library_links_to_samples_as_user**](docs/LibraryIntegrationAsUserApi.md#get_library_links_to_samples_as_user) | **GET** /api/v1/as-user/integration/link/library/libraries-to-samples/by/group/{id} | Retrieve library-samples pairs by group id. Pagination is based on unique libraries, not unique pairs.
+*LinkageAsCuratorApi* | [**delete_link_as_curator**](docs/LinkageAsCuratorApi.md#delete_link_as_curator) | **DELETE** /api/v1/as-curator/links | Deletes existing links matching the specified criteria.
+*LinkageAsCuratorApi* | [**get_data_types_as_curator**](docs/LinkageAsCuratorApi.md#get_data_types_as_curator) | **GET** /api/v1/as-curator/data-types | Lists all available data types.
+*LinkageAsCuratorApi* | [**get_data_types_links_as_curator**](docs/LinkageAsCuratorApi.md#get_data_types_links_as_curator) | **GET** /api/v1/as-curator/data-types/links | List all possible links between data types that match the specified criteria.
+*LinkageAsCuratorApi* | [**get_links_by_ids_as_curator**](docs/LinkageAsCuratorApi.md#get_links_by_ids_as_curator) | **POST** /api/v1/as-curator/links/get-batch | Finds existing links by passing many IDs.  Pagination goes through all links matched the criteria.
+*LinkageAsCuratorApi* | [**get_links_by_params_as_curator**](docs/LinkageAsCuratorApi.md#get_links_by_params_as_curator) | **GET** /api/v1/as-curator/links | Finds existing links matching the specified criteria.
+*LinkageAsCuratorApi* | [**save_links_as_curator**](docs/LinkageAsCuratorApi.md#save_links_as_curator) | **POST** /api/v1/as-curator/links | Creates new links between objects.
+*LinkageAsUserApi* | [**get_data_types_as_user**](docs/LinkageAsUserApi.md#get_data_types_as_user) | **GET** /api/v1/as-user/data-types | Lists all available data types.
+*LinkageAsUserApi* | [**get_data_types_links_as_user**](docs/LinkageAsUserApi.md#get_data_types_links_as_user) | **GET** /api/v1/as-user/data-types/links | List all possible links between data types that match the specified criteria.
+*LinkageAsUserApi* | [**get_links_by_ids_as_user**](docs/LinkageAsUserApi.md#get_links_by_ids_as_user) | **POST** /api/v1/as-user/links/get-batch | Finds existing links by passing many IDs.  Pagination goes through all links matched the criteria.
+*LinkageAsUserApi* | [**get_links_by_params_as_user**](docs/LinkageAsUserApi.md#get_links_by_params_as_user) | **GET** /api/v1/as-user/links | Finds existing links matching the specified criteria.
+*ManageDataApi* | [**delete_data**](docs/ManageDataApi.md#delete_data) | **DELETE** /api/v1/manage-data/data | Delete objects from ODM
+*ManageDataApi* | [**get_detached_objects**](docs/ManageDataApi.md#get_detached_objects) | **GET** /api/v1/manage-data/detached-objects | Retrieve a list of detached objects
+*MetadataVersioningAsCuratorApi* | [**publish_study_by_accession_as_curator**](docs/MetadataVersioningAsCuratorApi.md#publish_study_by_accession_as_curator) | **POST** /api/v1/as-curator/integration/studies/{id}/tasks/publish-versions | Asynchronous task that publishes all pending versions for a single study.
+*OmicsQueriesAsCuratorApi* | [**omics_search_expression_data_as_curator**](docs/OmicsQueriesAsCuratorApi.md#omics_search_expression_data_as_curator) | **GET** /api/v1/as-curator/omics/expression/data | Retrieve data objects by searching across multiple data types
+*OmicsQueriesAsCuratorApi* | [**omics_search_expression_groups_as_curator**](docs/OmicsQueriesAsCuratorApi.md#omics_search_expression_groups_as_curator) | **GET** /api/v1/as-curator/omics/expression/group | Retrieve group objects by searching across multiple data types
+*OmicsQueriesAsCuratorApi* | [**omics_search_flow_cytometry_data_as_curator**](docs/OmicsQueriesAsCuratorApi.md#omics_search_flow_cytometry_data_as_curator) | **GET** /api/v1/as-curator/omics/flow-cytometry/data | Retrieve flow cytometry data objects by searching across multiple data types
+*OmicsQueriesAsCuratorApi* | [**omics_search_flow_cytometry_groups_as_curator**](docs/OmicsQueriesAsCuratorApi.md#omics_search_flow_cytometry_groups_as_curator) | **GET** /api/v1/as-curator/omics/flow-cytometry/group | Retrieve group objects by searching across multiple data types
+*OmicsQueriesAsCuratorApi* | [**omics_search_samples_as_curator**](docs/OmicsQueriesAsCuratorApi.md#omics_search_samples_as_curator) | **GET** /api/v1/as-curator/omics/samples | Retrieve sample metadata objects by searching across multiple data types
+*OmicsQueriesAsCuratorApi* | [**omics_search_streamed_expression_data_as_curator**](docs/OmicsQueriesAsCuratorApi.md#omics_search_streamed_expression_data_as_curator) | **GET** /api/v1/as-curator/omics/expression/streamed-data | Stream data from a given tabular file
+*OmicsQueriesAsCuratorApi* | [**omics_search_variant_data_as_curator**](docs/OmicsQueriesAsCuratorApi.md#omics_search_variant_data_as_curator) | **GET** /api/v1/as-curator/omics/variant/data | Retrieve variant data objects by searching across multiple data types
+*OmicsQueriesAsCuratorApi* | [**omics_search_variant_groups_as_curator**](docs/OmicsQueriesAsCuratorApi.md#omics_search_variant_groups_as_curator) | **GET** /api/v1/as-curator/omics/variant/group | Retrieve group objects by searching across multiple data types
+*OmicsQueriesAsUserApi* | [**omics_search_expression_data_as_user**](docs/OmicsQueriesAsUserApi.md#omics_search_expression_data_as_user) | **GET** /api/v1/as-user/omics/expression/data | Retrieve data objects by searching across multiple data types
+*OmicsQueriesAsUserApi* | [**omics_search_expression_groups_as_user**](docs/OmicsQueriesAsUserApi.md#omics_search_expression_groups_as_user) | **GET** /api/v1/as-user/omics/expression/group | Retrieve group objects by searching across multiple data types
+*OmicsQueriesAsUserApi* | [**omics_search_flow_cytometry_data_as_user**](docs/OmicsQueriesAsUserApi.md#omics_search_flow_cytometry_data_as_user) | **GET** /api/v1/as-user/omics/flow-cytometry/data | Retrieve flow cytometry data objects by searching across multiple data types
+*OmicsQueriesAsUserApi* | [**omics_search_flow_cytometry_groups_as_user**](docs/OmicsQueriesAsUserApi.md#omics_search_flow_cytometry_groups_as_user) | **GET** /api/v1/as-user/omics/flow-cytometry/group | Retrieve group objects by searching across multiple data types
+*OmicsQueriesAsUserApi* | [**omics_search_samples_as_user**](docs/OmicsQueriesAsUserApi.md#omics_search_samples_as_user) | **GET** /api/v1/as-user/omics/samples | Retrieve sample metadata objects by searching across multiple data types
+*OmicsQueriesAsUserApi* | [**omics_search_streamed_expression_data_as_user**](docs/OmicsQueriesAsUserApi.md#omics_search_streamed_expression_data_as_user) | **GET** /api/v1/as-user/omics/expression/streamed-data | Stream data from a given tabular file
+*OmicsQueriesAsUserApi* | [**omics_search_variant_data_as_user**](docs/OmicsQueriesAsUserApi.md#omics_search_variant_data_as_user) | **GET** /api/v1/as-user/omics/variant/data | Retrieve variant data objects by searching across multiple data types
+*OmicsQueriesAsUserApi* | [**omics_search_variant_groups_as_user**](docs/OmicsQueriesAsUserApi.md#omics_search_variant_groups_as_user) | **GET** /api/v1/as-user/omics/variant/group | Retrieve group objects by searching across multiple data types
+*PreparationSPoTAsCuratorApi* | [**add_preparations_as_curator**](docs/PreparationSPoTAsCuratorApi.md#add_preparations_as_curator) | **POST** /api/v1/as-curator/preparations | Add new preparation object
+*PreparationSPoTAsCuratorApi* | [**delete_preparation_as_curator**](docs/PreparationSPoTAsCuratorApi.md#delete_preparation_as_curator) | **DELETE** /api/v1/as-curator/preparations/{id} | Delete a preparation object
+*PreparationSPoTAsCuratorApi* | [**delete_preparation_group_as_curator**](docs/PreparationSPoTAsCuratorApi.md#delete_preparation_group_as_curator) | **DELETE** /api/v1/as-curator/preparations/group/{id} | Delete a preparation group with all related preparation objects
+*PreparationSPoTAsCuratorApi* | [**get_preparation_as_curator**](docs/PreparationSPoTAsCuratorApi.md#get_preparation_as_curator) | **GET** /api/v1/as-curator/preparations/{id} | Retrieve a single preparation object by ID (accession)
+*PreparationSPoTAsCuratorApi* | [**get_preparation_by_version_as_curator**](docs/PreparationSPoTAsCuratorApi.md#get_preparation_by_version_as_curator) | **GET** /api/v1/as-curator/preparations/{id}/versions/{version} | Retrieve a single preparation object by ID (accession)
+*PreparationSPoTAsCuratorApi* | [**get_preparation_versions_as_curator**](docs/PreparationSPoTAsCuratorApi.md#get_preparation_versions_as_curator) | **GET** /api/v1/as-curator/preparations/{id}/versions | Retrieve a list of object versions by ID
+*PreparationSPoTAsCuratorApi* | [**get_preparations_by_group_as_curator**](docs/PreparationSPoTAsCuratorApi.md#get_preparations_by_group_as_curator) | **GET** /api/v1/as-curator/preparations/by/group/{id} | Retrieve preparations related to the given group
+*PreparationSPoTAsCuratorApi* | [**search_preparations_as_curator**](docs/PreparationSPoTAsCuratorApi.md#search_preparations_as_curator) | **GET** /api/v1/as-curator/preparations | List or search for preparation metadata objects
+*PreparationSPoTAsCuratorApi* | [**update_preparation_as_curator**](docs/PreparationSPoTAsCuratorApi.md#update_preparation_as_curator) | **PATCH** /api/v1/as-curator/preparations/{id} | Update a preparation object
+*PreparationSPoTAsUserApi* | [**get_preparation_as_user**](docs/PreparationSPoTAsUserApi.md#get_preparation_as_user) | **GET** /api/v1/as-user/preparations/{id} | Retrieve a single preparation object by ID (accession)
+*PreparationSPoTAsUserApi* | [**get_preparation_by_version_as_user**](docs/PreparationSPoTAsUserApi.md#get_preparation_by_version_as_user) | **GET** /api/v1/as-user/preparations/{id}/versions/{version} | Retrieve a single preparation object by ID (accession)
+*PreparationSPoTAsUserApi* | [**get_preparation_versions_as_user**](docs/PreparationSPoTAsUserApi.md#get_preparation_versions_as_user) | **GET** /api/v1/as-user/preparations/{id}/versions | Retrieve a list of object versions by ID
+*PreparationSPoTAsUserApi* | [**get_preparations_by_group_as_user**](docs/PreparationSPoTAsUserApi.md#get_preparations_by_group_as_user) | **GET** /api/v1/as-user/preparations/by/group/{id} | Retrieve preparations related to the given group
+*PreparationSPoTAsUserApi* | [**search_preparations_as_user**](docs/PreparationSPoTAsUserApi.md#search_preparations_as_user) | **GET** /api/v1/as-user/preparations | List or search for preparation metadata objects
+*PreparationIntegrationAsCuratorApi* | [**create_preparation_group_sample_group_link_as_curator**](docs/PreparationIntegrationAsCuratorApi.md#create_preparation_group_sample_group_link_as_curator) | **POST** /api/v1/as-curator/integration/link/preparation/group/{sourceId}/to/sample/group/{targetId} | Create links between samples and preparations
+*PreparationIntegrationAsCuratorApi* | [**create_preparation_sample_link_as_curator**](docs/PreparationIntegrationAsCuratorApi.md#create_preparation_sample_link_as_curator) | **POST** /api/v1/as-curator/integration/link/preparation/{sourceId}/to/sample/{targetId} | Create a link between a preparation and a sample
+*PreparationIntegrationAsCuratorApi* | [**delete_preparation_group_sample_group_link_as_curator**](docs/PreparationIntegrationAsCuratorApi.md#delete_preparation_group_sample_group_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/preparation/group/{sourceId}/to/sample/group/{targetId} | Delete links between samples and preparations related to the specified group
+*PreparationIntegrationAsCuratorApi* | [**delete_preparation_sample_link_as_curator**](docs/PreparationIntegrationAsCuratorApi.md#delete_preparation_sample_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/preparation/{sourceId}/to/sample/{targetId} | Delete a link between a preparation and a sample
+*PreparationIntegrationAsCuratorApi* | [**get_preparation_by_sample_as_curator**](docs/PreparationIntegrationAsCuratorApi.md#get_preparation_by_sample_as_curator) | **GET** /api/v1/as-curator/integration/link/preparation/by/sample/{id} | Retrieve preparation metadata by querying related sample ID (accession)
+*PreparationIntegrationAsCuratorApi* | [**get_preparation_groups_by_study_as_curator**](docs/PreparationIntegrationAsCuratorApi.md#get_preparation_groups_by_study_as_curator) | **GET** /api/v1/as-curator/integration/link/preparation/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*PreparationIntegrationAsCuratorApi* | [**get_preparation_links_to_samples_as_curator**](docs/PreparationIntegrationAsCuratorApi.md#get_preparation_links_to_samples_as_curator) | **GET** /api/v1/as-curator/integration/link/preparation/preparations-to-samples/by/group/{id} | Retrieve run-sample pairs by group id. Pagination is based on unique preparations, not unique pairs.
+*PreparationIntegrationAsCuratorApi* | [**get_preparations_by_samples_as_curator**](docs/PreparationIntegrationAsCuratorApi.md#get_preparations_by_samples_as_curator) | **GET** /api/v1/as-curator/integration/link/preparations/by/samples | Retrieve preparation metadata by querying related samples
+*PreparationIntegrationAsUserApi* | [**get_preparation_by_sample_as_user**](docs/PreparationIntegrationAsUserApi.md#get_preparation_by_sample_as_user) | **GET** /api/v1/as-user/integration/link/preparation/by/sample/{id} | Retrieve preparation metadata by querying related sample ID (accession)
+*PreparationIntegrationAsUserApi* | [**get_preparation_groups_by_study_as_user**](docs/PreparationIntegrationAsUserApi.md#get_preparation_groups_by_study_as_user) | **GET** /api/v1/as-user/integration/link/preparation/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*PreparationIntegrationAsUserApi* | [**get_preparation_links_to_samples_as_user**](docs/PreparationIntegrationAsUserApi.md#get_preparation_links_to_samples_as_user) | **GET** /api/v1/as-user/integration/link/preparation/preparations-to-samples/by/group/{id} | Retrieve run-sample pairs by group id. Pagination is based on unique preparations, not unique pairs.
+*PreparationIntegrationAsUserApi* | [**get_preparations_by_samples_as_user**](docs/PreparationIntegrationAsUserApi.md#get_preparations_by_samples_as_user) | **GET** /api/v1/as-user/integration/link/preparations/by/samples | Retrieve preparation metadata by querying related samples
+*SampleSPoTAsCuratorApi* | [**add_samples_as_curator**](docs/SampleSPoTAsCuratorApi.md#add_samples_as_curator) | **POST** /api/v1/as-curator/samples | Add new sample object
+*SampleSPoTAsCuratorApi* | [**delete_sample_as_curator**](docs/SampleSPoTAsCuratorApi.md#delete_sample_as_curator) | **DELETE** /api/v1/as-curator/samples/{id} | Delete a sample object
+*SampleSPoTAsCuratorApi* | [**get_sample_as_curator**](docs/SampleSPoTAsCuratorApi.md#get_sample_as_curator) | **GET** /api/v1/as-curator/samples/{id} | Retrieve a single sample object by ID (accession)
+*SampleSPoTAsCuratorApi* | [**get_sample_by_version_as_curator**](docs/SampleSPoTAsCuratorApi.md#get_sample_by_version_as_curator) | **GET** /api/v1/as-curator/samples/{id}/versions/{version} | Retrieve a single sample object by ID (accession)
+*SampleSPoTAsCuratorApi* | [**get_sample_versions_as_curator**](docs/SampleSPoTAsCuratorApi.md#get_sample_versions_as_curator) | **GET** /api/v1/as-curator/samples/{id}/versions | Retrieve a list of object versions by ID
+*SampleSPoTAsCuratorApi* | [**search_samples_as_curator**](docs/SampleSPoTAsCuratorApi.md#search_samples_as_curator) | **GET** /api/v1/as-curator/samples | List or search for sample metadata objects
+*SampleSPoTAsCuratorApi* | [**update_sample_as_curator**](docs/SampleSPoTAsCuratorApi.md#update_sample_as_curator) | **PATCH** /api/v1/as-curator/samples/{id} | Update a sample object
+*SampleSPoTAsUserApi* | [**get_sample_as_user**](docs/SampleSPoTAsUserApi.md#get_sample_as_user) | **GET** /api/v1/as-user/samples/{id} | Retrieve a single sample object by ID (accession)
+*SampleSPoTAsUserApi* | [**get_sample_by_version_as_user**](docs/SampleSPoTAsUserApi.md#get_sample_by_version_as_user) | **GET** /api/v1/as-user/samples/{id}/versions/{version} | Retrieve a single sample object by ID (accession)
+*SampleSPoTAsUserApi* | [**get_sample_versions_as_user**](docs/SampleSPoTAsUserApi.md#get_sample_versions_as_user) | **GET** /api/v1/as-user/samples/{id}/versions | Retrieve a list of object versions by ID
+*SampleSPoTAsUserApi* | [**search_samples_as_user**](docs/SampleSPoTAsUserApi.md#search_samples_as_user) | **GET** /api/v1/as-user/samples | List or search for sample metadata objects
+*SampleIntegrationAsCuratorApi* | [**create_sample_group_study_link_as_curator**](docs/SampleIntegrationAsCuratorApi.md#create_sample_group_study_link_as_curator) | **POST** /api/v1/as-curator/integration/link/sample/group/{sourceId}/to/study/{targetId} | Create a link between a group of sample objects and a study
+*SampleIntegrationAsCuratorApi* | [**create_sample_study_link_as_curator**](docs/SampleIntegrationAsCuratorApi.md#create_sample_study_link_as_curator) | **POST** /api/v1/as-curator/integration/link/sample/{sourceId}/to/study/{targetId} | Create a link between a sample and a study
+*SampleIntegrationAsCuratorApi* | [**delete_sample_group_study_link_as_curator**](docs/SampleIntegrationAsCuratorApi.md#delete_sample_group_study_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/sample/group/{sourceId}/to/study/{targetId} | Delete link between a group of sample objects and a study
+*SampleIntegrationAsCuratorApi* | [**delete_sample_study_link_as_curator**](docs/SampleIntegrationAsCuratorApi.md#delete_sample_study_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/sample/{sourceId}/to/study/{targetId} | Delete link between a sample and a study
+*SampleIntegrationAsCuratorApi* | [**get_samples_by_libraries_as_curator**](docs/SampleIntegrationAsCuratorApi.md#get_samples_by_libraries_as_curator) | **GET** /api/v1/as-curator/integration/link/samples/by/libraries | Retrieve sample metadata by querying related libraries
+*SampleIntegrationAsCuratorApi* | [**get_samples_by_preparations_as_curator**](docs/SampleIntegrationAsCuratorApi.md#get_samples_by_preparations_as_curator) | **GET** /api/v1/as-curator/integration/link/samples/by/preparations | Retrieve sample metadata by querying related preparations
+*SampleIntegrationAsCuratorApi* | [**get_samples_by_study_as_curator**](docs/SampleIntegrationAsCuratorApi.md#get_samples_by_study_as_curator) | **GET** /api/v1/as-curator/integration/link/samples/by/study/{id} | Retrieve sample metadata by querying related study ID (accession)
+*SampleIntegrationAsUserApi* | [**get_samples_by_libraries_as_user**](docs/SampleIntegrationAsUserApi.md#get_samples_by_libraries_as_user) | **GET** /api/v1/as-user/integration/link/samples/by/libraries | Retrieve sample metadata by querying related libraries
+*SampleIntegrationAsUserApi* | [**get_samples_by_preparations_as_user**](docs/SampleIntegrationAsUserApi.md#get_samples_by_preparations_as_user) | **GET** /api/v1/as-user/integration/link/samples/by/preparations | Retrieve sample metadata by querying related preparations
+*SampleIntegrationAsUserApi* | [**get_samples_by_study_as_user**](docs/SampleIntegrationAsUserApi.md#get_samples_by_study_as_user) | **GET** /api/v1/as-user/integration/link/samples/by/study/{id} | Retrieve sample metadata by querying related study ID (accession)
+*StudySPoTAsCuratorApi* | [**add_study_as_curator**](docs/StudySPoTAsCuratorApi.md#add_study_as_curator) | **POST** /api/v1/as-curator/studies | Add new study object
+*StudySPoTAsCuratorApi* | [**delete_study_as_curator**](docs/StudySPoTAsCuratorApi.md#delete_study_as_curator) | **DELETE** /api/v1/as-curator/studies/{id} | Delete a given study object. This will not delete related objects or links to related objects.
+*StudySPoTAsCuratorApi* | [**get_study_as_curator**](docs/StudySPoTAsCuratorApi.md#get_study_as_curator) | **GET** /api/v1/as-curator/studies/{id} | Retrieve a single study object by ID (accession)
+*StudySPoTAsCuratorApi* | [**get_study_by_version_as_curator**](docs/StudySPoTAsCuratorApi.md#get_study_by_version_as_curator) | **GET** /api/v1/as-curator/studies/{id}/versions/{version} | Retrieve a single study object by ID (accession)
+*StudySPoTAsCuratorApi* | [**get_study_versions_as_curator**](docs/StudySPoTAsCuratorApi.md#get_study_versions_as_curator) | **GET** /api/v1/as-curator/studies/{id}/versions | Retrieve a list of object versions by ID
+*StudySPoTAsCuratorApi* | [**search_studies_as_curator**](docs/StudySPoTAsCuratorApi.md#search_studies_as_curator) | **GET** /api/v1/as-curator/studies | List or search for study metadata objects
+*StudySPoTAsCuratorApi* | [**update_study_as_curator**](docs/StudySPoTAsCuratorApi.md#update_study_as_curator) | **PATCH** /api/v1/as-curator/studies/{id} | Update a study object
+*StudySPoTAsUserApi* | [**get_study_as_user**](docs/StudySPoTAsUserApi.md#get_study_as_user) | **GET** /api/v1/as-user/studies/{id} | Retrieve a single study object by ID (accession)
+*StudySPoTAsUserApi* | [**get_study_by_version_as_user**](docs/StudySPoTAsUserApi.md#get_study_by_version_as_user) | **GET** /api/v1/as-user/studies/{id}/versions/{version} | Retrieve a single study object by ID (accession)
+*StudySPoTAsUserApi* | [**get_study_versions_as_user**](docs/StudySPoTAsUserApi.md#get_study_versions_as_user) | **GET** /api/v1/as-user/studies/{id}/versions | Retrieve a list of object versions by ID
+*StudySPoTAsUserApi* | [**search_studies_as_user**](docs/StudySPoTAsUserApi.md#search_studies_as_user) | **GET** /api/v1/as-user/studies | List or search for study metadata objects
+*StudyIntegrationAsCuratorApi* | [**get_studies_by_libraries_as_curator**](docs/StudyIntegrationAsCuratorApi.md#get_studies_by_libraries_as_curator) | **GET** /api/v1/as-curator/integration/link/studies/by/libraries | Retrieve study metadata objects by querying related libraries
+*StudyIntegrationAsCuratorApi* | [**get_studies_by_preparations_as_curator**](docs/StudyIntegrationAsCuratorApi.md#get_studies_by_preparations_as_curator) | **GET** /api/v1/as-curator/integration/link/studies/by/preparations | Retrieve study metadata objects by querying related preparations
+*StudyIntegrationAsCuratorApi* | [**get_studies_by_samples_as_curator**](docs/StudyIntegrationAsCuratorApi.md#get_studies_by_samples_as_curator) | **GET** /api/v1/as-curator/integration/link/studies/by/samples | Retrieve study metadata objects by querying related samples
+*StudyIntegrationAsCuratorApi* | [**get_study_by_sample_as_curator**](docs/StudyIntegrationAsCuratorApi.md#get_study_by_sample_as_curator) | **GET** /api/v1/as-curator/integration/link/study/by/sample/{id} | Retrieve study metadata by querying sample ID (accession)
+*StudyIntegrationAsCuratorApi* | [**search_studies_by_filter_as_curator**](docs/StudyIntegrationAsCuratorApi.md#search_studies_by_filter_as_curator) | **POST** /api/v1/as-curator/integration/fulltext/search/studies | Find and retrieve studies via full-text or facet query
+*StudyIntegrationAsUserApi* | [**get_studies_by_libraries_as_user**](docs/StudyIntegrationAsUserApi.md#get_studies_by_libraries_as_user) | **GET** /api/v1/as-user/integration/link/studies/by/libraries | Retrieve study metadata objects by querying related libraries
+*StudyIntegrationAsUserApi* | [**get_studies_by_preparations_as_user**](docs/StudyIntegrationAsUserApi.md#get_studies_by_preparations_as_user) | **GET** /api/v1/as-user/integration/link/studies/by/preparations | Retrieve study metadata objects by querying related preparations
+*StudyIntegrationAsUserApi* | [**get_studies_by_samples_as_user**](docs/StudyIntegrationAsUserApi.md#get_studies_by_samples_as_user) | **GET** /api/v1/as-user/integration/link/studies/by/samples | Retrieve study metadata objects by querying related samples
+*StudyIntegrationAsUserApi* | [**get_study_by_sample_as_user**](docs/StudyIntegrationAsUserApi.md#get_study_by_sample_as_user) | **GET** /api/v1/as-user/integration/link/study/by/sample/{id} | Retrieve study metadata by querying sample ID (accession)
+*StudyIntegrationAsUserApi* | [**search_studies_by_filter_as_user**](docs/StudyIntegrationAsUserApi.md#search_studies_by_filter_as_user) | **POST** /api/v1/as-user/integration/fulltext/search/studies | Find and retrieve studies via full-text or facet query
+*TasksAPIApi* | [**get_task_info**](docs/TasksAPIApi.md#get_task_info) | **GET** /api/v1/tasks/{id} | Retrieve information about any ODM task.
+*TasksAPIApi* | [**publish_all_studies**](docs/TasksAPIApi.md#publish_all_studies) | **POST** /api/v1/tasks/publish-versions | Asynchronous task that publishes all pending versions across all studies in the instance.
+*UsersApi* | [**create_user**](docs/UsersApi.md#create_user) | **POST** /api/v1/scim/Users | Add a new user
+*UsersApi* | [**delete_user**](docs/UsersApi.md#delete_user) | **DELETE** /api/v1/scim/Users/{id} | Deactivate a user
+*UsersApi* | [**find_users**](docs/UsersApi.md#find_users) | **GET** /api/v1/scim/Users | Retrieve a list of all active users
+*UsersApi* | [**get_user**](docs/UsersApi.md#get_user) | **GET** /api/v1/scim/Users/{id} | Retrieve a user by id
+*UsersApi* | [**patch_user**](docs/UsersApi.md#patch_user) | **PATCH** /api/v1/scim/Users/{id} | Update a user
+*ValidationSummaryAsCuratorApi* | [**search_expression_data_as_curator**](docs/ValidationSummaryAsCuratorApi.md#search_expression_data_as_curator) | **GET** /api/v1/as-curator/integration/studies/{id}/validation-summary | Retrieve validation summary by querying study ID (accession)
+*VariantSPoTAsCuratorApi* | [**add_variants_as_curator**](docs/VariantSPoTAsCuratorApi.md#add_variants_as_curator) | **POST** /api/v1/as-curator/variants/vcf | Create multiple new objects from a multi-row data file with optional supplied metadata
+*VariantSPoTAsCuratorApi* | [**delete_variant_group_as_curator**](docs/VariantSPoTAsCuratorApi.md#delete_variant_group_as_curator) | **DELETE** /api/v1/as-curator/variants/group/{id} | Delete the object
+*VariantSPoTAsCuratorApi* | [**get_all_variants_as_curator**](docs/VariantSPoTAsCuratorApi.md#get_all_variants_as_curator) | **GET** /api/v1/as-curator/variants | Retrieve multiple variant data and metadata objects
+*VariantSPoTAsCuratorApi* | [**get_variant_as_curator**](docs/VariantSPoTAsCuratorApi.md#get_variant_as_curator) | **GET** /api/v1/as-curator/variants/{id} | Retrieve a single variant object by ID (accession)
+*VariantSPoTAsCuratorApi* | [**get_variant_by_version_as_curator**](docs/VariantSPoTAsCuratorApi.md#get_variant_by_version_as_curator) | **GET** /api/v1/as-curator/variants/{id}/versions/{version} | Retrieve a single variant object by ID (accession)
+*VariantSPoTAsCuratorApi* | [**get_variant_group_as_curator**](docs/VariantSPoTAsCuratorApi.md#get_variant_group_as_curator) | **GET** /api/v1/as-curator/variants/group/{id} | Retrieve a single group object by ID (accession)
+*VariantSPoTAsCuratorApi* | [**get_variant_group_by_run_as_curator**](docs/VariantSPoTAsCuratorApi.md#get_variant_group_by_run_as_curator) | **GET** /api/v1/as-curator/variants/group/by/run/{id} | Retrieve a single group object by run ID (accession)
+*VariantSPoTAsCuratorApi* | [**get_variant_versions_as_curator**](docs/VariantSPoTAsCuratorApi.md#get_variant_versions_as_curator) | **GET** /api/v1/as-curator/variants/{id}/versions | Retrieve a list of object versions by ID
+*VariantSPoTAsCuratorApi* | [**search_groups_as_curator**](docs/VariantSPoTAsCuratorApi.md#search_groups_as_curator) | **GET** /api/v1/as-curator/variants/group | Retrieve groups that match a query
+*VariantSPoTAsCuratorApi* | [**search_variant_runs_as_curator**](docs/VariantSPoTAsCuratorApi.md#search_variant_runs_as_curator) | **GET** /api/v1/as-curator/variants/runs/by/group/{id} | Retrieve run objects related to the given group
+*VariantSPoTAsCuratorApi* | [**update_variant_as_curator**](docs/VariantSPoTAsCuratorApi.md#update_variant_as_curator) | **PATCH** /api/v1/as-curator/variants/{id} | Update object metadata
+*VariantSPoTAsUserApi* | [**get_all_variants_as_user**](docs/VariantSPoTAsUserApi.md#get_all_variants_as_user) | **GET** /api/v1/as-user/variants | Retrieve multiple variant data and metadata objects
+*VariantSPoTAsUserApi* | [**get_variant_as_user**](docs/VariantSPoTAsUserApi.md#get_variant_as_user) | **GET** /api/v1/as-user/variants/{id} | Retrieve a single variant object by ID (accession)
+*VariantSPoTAsUserApi* | [**get_variant_by_version_as_user**](docs/VariantSPoTAsUserApi.md#get_variant_by_version_as_user) | **GET** /api/v1/as-user/variants/{id}/versions/{version} | Retrieve a single variant object by ID (accession)
+*VariantSPoTAsUserApi* | [**get_variant_group_as_user**](docs/VariantSPoTAsUserApi.md#get_variant_group_as_user) | **GET** /api/v1/as-user/variants/group/{id} | Retrieve a single group object by ID (accession)
+*VariantSPoTAsUserApi* | [**get_variant_group_by_run_as_user**](docs/VariantSPoTAsUserApi.md#get_variant_group_by_run_as_user) | **GET** /api/v1/as-user/variants/group/by/run/{id} | Retrieve a single group object by run ID (accession)
+*VariantSPoTAsUserApi* | [**get_variant_versions_as_user**](docs/VariantSPoTAsUserApi.md#get_variant_versions_as_user) | **GET** /api/v1/as-user/variants/{id}/versions | Retrieve a list of object versions by ID
+*VariantSPoTAsUserApi* | [**search_variant_groups_as_user**](docs/VariantSPoTAsUserApi.md#search_variant_groups_as_user) | **GET** /api/v1/as-user/variants/group | Retrieve groups that match a query
+*VariantSPoTAsUserApi* | [**search_variant_runs_as_user**](docs/VariantSPoTAsUserApi.md#search_variant_runs_as_user) | **GET** /api/v1/as-user/variants/runs/by/group/{id} | Retrieve run objects related to the given group
+*VariantIntegrationAsCuratorApi* | [**create_variant_group_sample_group_link_as_curator**](docs/VariantIntegrationAsCuratorApi.md#create_variant_group_sample_group_link_as_curator) | **POST** /api/v1/as-curator/integration/link/variant/group/{sourceId}/to/sample/group/{targetId} | Create a link between a group of variant objects and a group of sample objects
+*VariantIntegrationAsCuratorApi* | [**create_variant_sample_link_as_curator**](docs/VariantIntegrationAsCuratorApi.md#create_variant_sample_link_as_curator) | **POST** /api/v1/as-curator/integration/link/variant/{sourceId}/to/sample/{targetId} | Create a link between a variant object and a sample
+*VariantIntegrationAsCuratorApi* | [**delete_variant_group_sample_group_link_as_curator**](docs/VariantIntegrationAsCuratorApi.md#delete_variant_group_sample_group_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/variant/group/{sourceId}/to/sample/group/{targetId} | Delete link between a group of variant objects and a group of sample objects
+*VariantIntegrationAsCuratorApi* | [**delete_variant_sample_link_as_curator**](docs/VariantIntegrationAsCuratorApi.md#delete_variant_sample_link_as_curator) | **DELETE** /api/v1/as-curator/integration/link/variant/{sourceId}/to/sample/{targetId} | Delete link between a variant object and a sample
+*VariantIntegrationAsCuratorApi* | [**get_variant_by_sample_as_curator**](docs/VariantIntegrationAsCuratorApi.md#get_variant_by_sample_as_curator) | **GET** /api/v1/as-curator/integration/link/variant/by/sample/{id} | Retrieve variant run-level data by querying related sample ID (accession)
+*VariantIntegrationAsCuratorApi* | [**get_variant_groups_by_study_as_curator**](docs/VariantIntegrationAsCuratorApi.md#get_variant_groups_by_study_as_curator) | **GET** /api/v1/as-curator/integration/link/variant/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*VariantIntegrationAsCuratorApi* | [**get_variant_run_to_sample_pairs_as_curator**](docs/VariantIntegrationAsCuratorApi.md#get_variant_run_to_sample_pairs_as_curator) | **GET** /api/v1/as-curator/integration/link/variant/run-to-samples/by/group/{id} | Retrieve run-sample pairs by group id. Pagination is based on unique runs, not unique pairs.
+*VariantIntegrationAsUserApi* | [**get_variant_by_sample_as_user**](docs/VariantIntegrationAsUserApi.md#get_variant_by_sample_as_user) | **GET** /api/v1/as-user/integration/link/variant/by/sample/{id} | Retrieve variant run-level data by querying related sample ID (accession)
+*VariantIntegrationAsUserApi* | [**get_variant_groups_by_study_as_user**](docs/VariantIntegrationAsUserApi.md#get_variant_groups_by_study_as_user) | **GET** /api/v1/as-user/integration/link/variant/group/by/study/{id} | Retrieve group metadata by querying study ID (accession)
+*VariantIntegrationAsUserApi* | [**get_variant_run_to_sample_pairs_as_user**](docs/VariantIntegrationAsUserApi.md#get_variant_run_to_sample_pairs_as_user) | **GET** /api/v1/as-user/integration/link/variant/run-to-samples/by/group/{id} | Retrieve run-sample pairs by group id. Pagination is based on unique runs, not unique pairs.
+*XrefsetQueriesApi* | [**create**](docs/XrefsetQueriesApi.md#create) | **POST** /api/v1/xrefsets | Import a new xrefset file
+*XrefsetQueriesApi* | [**delete_file**](docs/XrefsetQueriesApi.md#delete_file) | **DELETE** /api/v1/xrefsets/{id} | Delete a xrefset with all related data. Only users who uploaded the xrefset are allowed to delete it.
+*XrefsetQueriesApi* | [**get_details_by_accession**](docs/XrefsetQueriesApi.md#get_details_by_accession) | **GET** /api/v1/xrefsets/{id}/metadata | Retrieve xrefset details
+*XrefsetQueriesApi* | [**search_entries**](docs/XrefsetQueriesApi.md#search_entries) | **GET** /api/v1/xrefsets/entries | Retrieve a list of entries across all xrefsets for given sourceId and targetId
+*XrefsetQueriesApi* | [**search_entries_within_file**](docs/XrefsetQueriesApi.md#search_entries_within_file) | **GET** /api/v1/xrefsets/{id}/entries | Retrieve a list of entries for the given xrefset and given sourceId and targetId
+
+
+## Documentation For Models
+
+ - [AppliedFilter](docs/AppliedFilter.md)
+ - [AttributeInvalidValue](docs/AttributeInvalidValue.md)
+ - [AttributeInvalidValueErrorsInner](docs/AttributeInvalidValueErrorsInner.md)
+ - [AttributeValidationSummary](docs/AttributeValidationSummary.md)
+ - [AttributeValidationSummaryAttributeInvalidValuesInner](docs/AttributeValidationSummaryAttributeInvalidValuesInner.md)
+ - [BaseErrorResponse](docs/BaseErrorResponse.md)
+ - [BaseErrorResponseError](docs/BaseErrorResponseError.md)
+ - [BatchOfIds](docs/BatchOfIds.md)
+ - [CommitInfo](docs/CommitInfo.md)
+ - [CreateGroup201Response](docs/CreateGroup201Response.md)
+ - [CreateGroupRequest](docs/CreateGroupRequest.md)
+ - [CreateGroupRequestMembersInner](docs/CreateGroupRequestMembersInner.md)
+ - [CreateUser201Response](docs/CreateUser201Response.md)
+ - [CreateUser201ResponseAllOfMeta](docs/CreateUser201ResponseAllOfMeta.md)
+ - [CreateUserRequest](docs/CreateUserRequest.md)
+ - [CreateUserRequestEmailsInner](docs/CreateUserRequestEmailsInner.md)
+ - [DataItem](docs/DataItem.md)
+ - [DataPresentation](docs/DataPresentation.md)
+ - [DataPresentationRelationships](docs/DataPresentationRelationships.md)
+ - [DetachedCollection](docs/DetachedCollection.md)
+ - [DetachedCollectionDataInner](docs/DetachedCollectionDataInner.md)
+ - [DetachedObject](docs/DetachedObject.md)
+ - [Email](docs/Email.md)
+ - [ErrorMessage](docs/ErrorMessage.md)
+ - [ExceptionTypeAndMessage](docs/ExceptionTypeAndMessage.md)
+ - [ExpressionItem](docs/ExpressionItem.md)
+ - [ExpressionResponse](docs/ExpressionResponse.md)
+ - [ExpressionSignalSource](docs/ExpressionSignalSource.md)
+ - [FilterGroupsResponse](docs/FilterGroupsResponse.md)
+ - [FilterOption](docs/FilterOption.md)
+ - [FilterOptionGroup](docs/FilterOptionGroup.md)
+ - [FilterUsersResponse](docs/FilterUsersResponse.md)
+ - [FindObjectsResponse](docs/FindObjectsResponse.md)
+ - [FindObjectsResponseFilterOptionGroupsInner](docs/FindObjectsResponseFilterOptionGroupsInner.md)
+ - [FindObjectsResponseFilterOptionGroupsInnerOptionsInner](docs/FindObjectsResponseFilterOptionGroupsInnerOptionsInner.md)
+ - [FindObjectsResponseObjectsPage](docs/FindObjectsResponseObjectsPage.md)
+ - [FindObjectsResponseObjectsPageContentInner](docs/FindObjectsResponseObjectsPageContentInner.md)
+ - [FindObjectsResponseObjectsPageContentInnerSummaryInner](docs/FindObjectsResponseObjectsPageContentInnerSummaryInner.md)
+ - [FlowCytometryItem](docs/FlowCytometryItem.md)
+ - [FlowCytometryResponse](docs/FlowCytometryResponse.md)
+ - [FlowCytometrySignalSource](docs/FlowCytometrySignalSource.md)
+ - [GetExpressionAsUser200Response](docs/GetExpressionAsUser200Response.md)
+ - [GetExpressionAsUser200ResponseFeature](docs/GetExpressionAsUser200ResponseFeature.md)
+ - [GetExpressionAsUser200ResponseValue](docs/GetExpressionAsUser200ResponseValue.md)
+ - [GetFlowCytometryAsCurator200Response](docs/GetFlowCytometryAsCurator200Response.md)
+ - [GetVariantAsCurator200Response](docs/GetVariantAsCurator200Response.md)
+ - [Group](docs/Group.md)
+ - [GroupPatch](docs/GroupPatch.md)
+ - [GroupResponse](docs/GroupResponse.md)
+ - [GroupValidationSummary](docs/GroupValidationSummary.md)
+ - [GroupValidationSummaryAttributesInner](docs/GroupValidationSummaryAttributesInner.md)
+ - [IMetadata](docs/IMetadata.md)
+ - [ImportExpressionSignalRunRequest](docs/ImportExpressionSignalRunRequest.md)
+ - [ImportMetadataRequest](docs/ImportMetadataRequest.md)
+ - [ImportSignalRunRequest](docs/ImportSignalRunRequest.md)
+ - [Info](docs/Info.md)
+ - [JobRuntimeError](docs/JobRuntimeError.md)
+ - [JobRuntimeErrorStackInner](docs/JobRuntimeErrorStackInner.md)
+ - [JsonMetadata](docs/JsonMetadata.md)
+ - [Link](docs/Link.md)
+ - [ListResponse](docs/ListResponse.md)
+ - [ListResponseMeta](docs/ListResponseMeta.md)
+ - [ListResponseMetaPagination](docs/ListResponseMetaPagination.md)
+ - [ManagedObject](docs/ManagedObject.md)
+ - [Member](docs/Member.md)
+ - [Meta](docs/Meta.md)
+ - [MetaResponse](docs/MetaResponse.md)
+ - [MetadataPresentation](docs/MetadataPresentation.md)
+ - [MetadataPresentationMetadata](docs/MetadataPresentationMetadata.md)
+ - [MetadataWithId](docs/MetadataWithId.md)
+ - [MetainfoKeyForSummary](docs/MetainfoKeyForSummary.md)
+ - [ObjectsPage](docs/ObjectsPage.md)
+ - [OmicsResponse](docs/OmicsResponse.md)
+ - [OmicsResponseDataPresentation](docs/OmicsResponseDataPresentation.md)
+ - [OmicsResponseDataPresentationDataInner](docs/OmicsResponseDataPresentationDataInner.md)
+ - [OmicsResponseMetadataPresentation](docs/OmicsResponseMetadataPresentation.md)
+ - [OmicsResponseMetadataPresentationDataInner](docs/OmicsResponseMetadataPresentationDataInner.md)
+ - [OmicsResponseMetadataWithId](docs/OmicsResponseMetadataWithId.md)
+ - [Output](docs/Output.md)
+ - [OutputErrorsInner](docs/OutputErrorsInner.md)
+ - [PageRequest](docs/PageRequest.md)
+ - [PaginationInfo](docs/PaginationInfo.md)
+ - [PatchOperation](docs/PatchOperation.md)
+ - [Relationships](docs/Relationships.md)
+ - [RunsResponse](docs/RunsResponse.md)
+ - [SCIMErrorResponse](docs/SCIMErrorResponse.md)
+ - [SampleSource](docs/SampleSource.md)
+ - [SearchStudyRequest](docs/SearchStudyRequest.md)
+ - [SearchStudyRequestFiltersInner](docs/SearchStudyRequestFiltersInner.md)
+ - [SearchStudyRequestPage](docs/SearchStudyRequestPage.md)
+ - [SourceTypePair](docs/SourceTypePair.md)
+ - [StartImportFlowCytometryRequest](docs/StartImportFlowCytometryRequest.md)
+ - [StudyGenericSource](docs/StudyGenericSource.md)
+ - [StudySearchInfo](docs/StudySearchInfo.md)
+ - [StudyValidationSummary](docs/StudyValidationSummary.md)
+ - [StudyValidationSummarySamplesInner](docs/StudyValidationSummarySamplesInner.md)
+ - [TaskInfo](docs/TaskInfo.md)
+ - [User](docs/User.md)
+ - [UserPatch](docs/UserPatch.md)
+ - [UserPatchOperationsInner](docs/UserPatchOperationsInner.md)
+ - [UserResponse](docs/UserResponse.md)
+ - [ValidationError](docs/ValidationError.md)
+ - [VariantItem](docs/VariantItem.md)
+ - [VariantResponse](docs/VariantResponse.md)
+ - [VariantSignalSource](docs/VariantSignalSource.md)
+ - [XrefSetCreateRequest](docs/XrefSetCreateRequest.md)
+ - [XrefSetCreateResponse](docs/XrefSetCreateResponse.md)
+ - [XrefSetMetadata](docs/XrefSetMetadata.md)
+ - [XrefSetSearchResult](docs/XrefSetSearchResult.md)
+ - [XrefSetSearchResultEntry](docs/XrefSetSearchResultEntry.md)
+ - [XrefSetSearchResultResultInner](docs/XrefSetSearchResultResultInner.md)
+
+
+<a id="documentation-for-authorization"></a>
+## Documentation For Authorization
+
+
+Authentication schemes defined for the API:
+<a id="Access-token"></a>
+### Access-token
+
+- **Type**: API key
+- **API key parameter name**: Authorization
+- **Location**: HTTP header
+
+<a id="Genestack-API-Token"></a>
+### Genestack-API-Token
+
+- **Type**: API key
+- **API key parameter name**: Genestack-API-Token
+- **Location**: HTTP header
+
+
+## Author
+
+
+
+