obsarray 1.0.1__tar.gz → 1.0.2__tar.gz

{obsarray-1.0.1/obsarray.egg-info → obsarray-1.0.2}/PKG-INFO

@@ -1,20 +1,14 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: obsarray
-Version: 1.0.1
+Version: 1.0.2
 Summary: Measurement data handling in Python
-Home-page: https://github.com/comet-toolkit/obsarray
-Author: CoMet Toolkit Team
-Author-email: team@comet-toolkit.org
-License: GPLv3
-Classifier: Development Status :: 2 - Pre-Alpha
-Classifier: Programming Language :: Python
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
+Author-email: CoMet Toolkit Team <team@comet-toolkit.org>
+Project-URL: Homepage, https://github.com/comet-toolkit/obsarray
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: comet_maths
-Requires-Dist: netcdf4==1.6.5
+Requires-Dist: netcdf4
 Requires-Dist: xarray
 Provides-Extra: dev
 Requires-Dist: pre-commit; extra == "dev"
@@ -24,6 +18,7 @@ Requires-Dist: sphinx_design; extra == "dev"
 Requires-Dist: sphinx_book_theme; extra == "dev"
 Requires-Dist: ipython; extra == "dev"
 Requires-Dist: sphinx_autosummary_accessors; extra == "dev"
+Dynamic: license-file
 
 # obsarray: Measurement uncertainty handling in Python
 

obsarray-1.0.2/docs/conf.py

@@ -0,0 +1,181 @@
+#!/usr/bin/env python
+#
+# obsarray documentation build configuration file, created by
+# cookiecutter
+#
+# This file is execfile()d with the current directory set to its
+# containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+
+# If extensions (or modules to document with autodoc) are in another
+# directory, add these directories to sys.path here. If the directory is
+# relative to the documentation root, use os.path.abspath to make it
+# absolute, like shown here.
+
+import sphinx_autosummary_accessors
+import obsarray
+
+project_title = "obsarray".replace("_", " ").title()
+
+
+# -- General configuration ---------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#
+# needs_sphinx = '1.0'
+
+# Attempt to make links automatially
+default_role = "code"
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+# CFAB added napolean to support google-style docstrings
+extensions = [
+    "sphinx.ext.autodoc",
+    "sphinx.ext.autosummary",
+    "sphinx.ext.intersphinx",
+    "sphinx.ext.viewcode",
+    "sphinx.ext.napoleon",
+    "IPython.sphinxext.ipython_directive",
+    "IPython.sphinxext.ipython_console_highlighting",
+    "sphinx_design",
+    "sphinx_autosummary_accessors",
+]
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ["_templates", sphinx_autosummary_accessors.templates_path]
+
+# The suffix(es) of source filenames.
+# You can specify multiple suffix as a list of string:
+#
+# source_suffix = ['.rst', '.md']
+source_suffix = ".rst"
+
+# The master toctree document.
+master_doc = "index"
+
+# General information about the project.
+project = project_title
+copyright = "CoMet Toolkit Team"
+author = "CoMet Toolkit Team"
+
+# The version info for the project you're documenting, acts as replacement
+# for |version| and |release|, also used in various other places throughout
+# the built documents.
+#
+# The short X.Y version.
+version = obsarray.__version__
+# The full version, including alpha/beta/rc tags.
+release = obsarray.__version__
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#
+# This is also used if you do content translation via gettext catalogs.
+# Usually you set "language" from the command line for these cases.
+language = None
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This patterns also effect to html_static_path and html_extra_path
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = "sphinx"
+
+rst_prolog = """
+.. role:: python(code)
+    :language: python
+    :class: highlight
+"""
+
+# If true, `todo` and `todoList` produce output, else they produce nothing.
+todo_include_todos = False
+
+
+# -- Options for HTML output -------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+#
+html_theme = "sphinx_book_theme"
+
+# Theme options are theme-specific and customize the look and feel of a
+# theme further.  For a list of options available for each theme, see the
+# documentation.
+#
+# html_theme_options = {}
+
+html_logo = "figs/obsarray.png"
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ["_static"]
+
+# -- Options for HTMLHelp output ---------------------------------------
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = "obsarraydoc"
+
+
+# -- Options for LaTeX output ------------------------------------------
+
+latex_elements = {
+    # The paper size ('letterpaper' or 'a4paper').
+    #
+    # 'papersize': 'letterpaper',
+    # The font size ('10pt', '11pt' or '12pt').
+    #
+    # 'pointsize': '10pt',
+    # Additional stuff for the LaTeX preamble.
+    #
+    # 'preamble': '',
+    # Latex figure (float) alignment
+    #
+    # 'figure_align': 'htbp',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass
+# [howto, manual, or own class]).
+latex_documents = [
+    (
+        master_doc,
+        "user_manual.tex",
+        "{} Documentation".format(project_title),
+        "CoMet Toolkit Team",
+        "manual",
+    ),
+]
+
+
+# -- Options for manual page output ------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [(master_doc, "obsarray", "obsarray Documentation", [author], 1)]
+
+
+# -- Options for Texinfo output ----------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+#  dir menu entry, description, category)
+texinfo_documents = [
+    (
+        master_doc,
+        "obsarray",
+        "obsarray Documentation",
+        author,
+        "obsarray",
+        "Extension to xarray for handling uncertainty quantified observation data",
+        "Miscellaneous",
+    ),
+]

obsarray-1.0.2/notebook/test_register_err_corr_form.py

@@ -0,0 +1,45 @@
+from obsarray.err_corr import register_err_corr_form, BaseErrCorrForm
+import xarray as xr
+import numpy as np
+import obsarray
+
+
+@register_err_corr_form("new")
+class NewForm(BaseErrCorrForm):
+
+    form = "new"
+    is_systematic = True
+
+    def build_matrix(self, idx: np.ndarray) -> np.ndarray:
+        return "abc"
+
+
+# ds = xr.open_dataset("obs_example.nc")
+#
+# ds.unc["temperature"]["u_sys_temperature"] = (
+#     ["x", "y", "time"],
+#     ds.temperature * 0.03,
+#     {
+#         "err_corr": [
+#             {
+#                 "dim": "x",
+#                 "form": "new",
+#                 "params": [],
+#             },
+#             {
+#                 "dim": "y",
+#                 "form": "systematic",
+#                 "params": [],
+#             },
+#             {
+#                 "dim": "time",
+#                 "form": "systematic",
+#                 "params": [],
+#             },
+#         ]
+#     },
+# )
+#
+# p = ds.unc["temperature"]["u_sys_temperature"]
+#
+# pass

{obsarray-1.0.1 → obsarray-1.0.2}/obsarray/_version.py

@@ -1,5 +1,5 @@
 
-# This file was generated by 'versioneer.py' (0.18) from
+# This file was generated by 'versioneer.py' (0.29) from
 # revision-control system data, or from the parent directory name of an
 # unpacked source archive. Distribution tarballs contain a pre-generated copy
 # of this file.
@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2024-10-17T11:56:22+0100",
+ "date": "2025-04-25T14:06:04+0100",
  "dirty": false,
  "error": null,
- "full-revisionid": "e69e81f9deaa8c268e07f521788251875a87ef1a",
- "version": "v1.0.1"
+ "full-revisionid": "b26b43a5d2e41ccb9a5e73c00e6d16a28a8515a9",
+ "version": "1.0.2"
 }
 '''  # END VERSION_JSON
 

{obsarray-1.0.1 → obsarray-1.0.2}/obsarray/templater/dataset_util.py

@@ -454,15 +454,15 @@ class DatasetUtil:
         if dtype == numpy.int8:
             return numpy.int8(-127)
         if dtype == numpy.uint8:
-            return numpy.uint8(-1)
+            return numpy.iinfo(numpy.uint8).max
         elif dtype == numpy.int16:
             return numpy.int16(-32767)
         elif dtype == numpy.uint16:
-            return numpy.uint16(-1)
+            return numpy.iinfo(numpy.uint16).max
         elif dtype == numpy.int32:
             return numpy.int32(-2147483647)
         elif dtype == numpy.uint32:
-            return numpy.uint32(-1)
+            return numpy.iinfo(numpy.uint32).max
         elif dtype == numpy.int64:
             return numpy.int64(-9223372036854775806)
         elif dtype == numpy.float32:

{obsarray-1.0.1 → obsarray-1.0.2/obsarray.egg-info}/PKG-INFO

@@ -1,20 +1,14 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: obsarray
-Version: 1.0.1
+Version: 1.0.2
 Summary: Measurement data handling in Python
-Home-page: https://github.com/comet-toolkit/obsarray
-Author: CoMet Toolkit Team
-Author-email: team@comet-toolkit.org
-License: GPLv3
-Classifier: Development Status :: 2 - Pre-Alpha
-Classifier: Programming Language :: Python
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
+Author-email: CoMet Toolkit Team <team@comet-toolkit.org>
+Project-URL: Homepage, https://github.com/comet-toolkit/obsarray
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: comet_maths
-Requires-Dist: netcdf4==1.6.5
+Requires-Dist: netcdf4
 Requires-Dist: xarray
 Provides-Extra: dev
 Requires-Dist: pre-commit; extra == "dev"
@@ -24,6 +18,7 @@ Requires-Dist: sphinx_design; extra == "dev"
 Requires-Dist: sphinx_book_theme; extra == "dev"
 Requires-Dist: ipython; extra == "dev"
 Requires-Dist: sphinx_autosummary_accessors; extra == "dev"
+Dynamic: license-file
 
 # obsarray: Measurement uncertainty handling in Python
 

{obsarray-1.0.1 → obsarray-1.0.2}/obsarray.egg-info/SOURCES.txt

@@ -1,9 +1,11 @@
 LICENSE
 MANIFEST.in
 README.md
-setup.cfg
+pyproject.toml
 setup.py
 versioneer.py
+docs/conf.py
+notebook/test_register_err_corr_form.py
 obsarray/__init__.py
 obsarray/_version.py
 obsarray/err_corr.py

{obsarray-1.0.1 → obsarray-1.0.2}/obsarray.egg-info/requires.txt

@@ -1,5 +1,5 @@
 comet_maths
-netcdf4==1.6.5
+netcdf4
 xarray
 
 [dev]

obsarray-1.0.2/obsarray.egg-info/top_level.txt

@@ -0,0 +1,5 @@
+dist
+docs
+notebook
+obsarray
+quality_documentation

obsarray-1.0.2/pyproject.toml

@@ -0,0 +1,47 @@
+[build-system]
+requires = ["setuptools>=61", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "obsarray"
+dynamic = ["version"]
+description = "Measurement data handling in Python"
+authors = [
+  { name="CoMet Toolkit Team", email="team@comet-toolkit.org" }
+]
+readme = "README.md"
+license-files = ["LICENSE"]
+requires-python = ">=3.8"
+dependencies = [
+  "comet_maths",
+  "netcdf4",
+  "xarray"
+]
+
+[project.optional-dependencies]
+dev = [
+  "pre-commit",
+  "tox",
+  "sphinx",
+  "sphinx_design",
+  "sphinx_book_theme",
+  "ipython",
+  "sphinx_autosummary_accessors"
+]
+
+[project.urls]
+"Homepage" = "https://github.com/comet-toolkit/obsarray"
+
+[tool.setuptools]
+include-package-data = true
+
+[tool.setuptools.packages.find]
+exclude = ["tests"]
+
+[tool.versioneer]
+VCS = "git"
+style = "pep440"
+versionfile_source = "obsarray/_version.py"
+versionfile_build = "obsarray/_version.py"
+tag_prefix = "v"
+parentdir_prefix = ""

obsarray-1.0.2/setup.cfg

@@ -0,0 +1,4 @@
+[egg_info]
+tag_build = 
+tag_date = 0
+

obsarray-1.0.2/setup.py

@@ -0,0 +1,7 @@
+import versioneer
+from setuptools import setup
+
+setup(
+    version=versioneer.get_version(),
+    cmdclass=versioneer.get_cmdclass(),
+)