obi-notebook 0.2.dev1__tar.gz → 0.2.dev2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/PKG-INFO +1 -1
- obi_notebook-0.2.dev2/example.ipynb +333 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/src/obi_notebook/get_entities.py +1 -1
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/src/obi_notebook.egg-info/PKG-INFO +1 -1
- obi_notebook-0.2.dev1/example.ipynb +0 -183
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/.github/workflows/sdist.yml +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/.github/workflows/tox.yml +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/.gitignore +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/CHANGELOG.rst +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/LICENSE.txt +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/README.md +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/demo.gif +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/pyproject.toml +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/setup.cfg +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/src/obi_notebook/__init__.py +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/src/obi_notebook/get_projects.py +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/src/obi_notebook.egg-info/SOURCES.txt +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/src/obi_notebook.egg-info/dependency_links.txt +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/src/obi_notebook.egg-info/requires.txt +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/src/obi_notebook.egg-info/top_level.txt +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/tox.ini +0 -0
- {obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/uv.lock +0 -0
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Metadata-Version: 2.4
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Name: obi_notebook
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Version: 0.2.
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Version: 0.2.dev2
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Summary: convenience functions for OBI notebooks
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Author-email: Open Brain Institute <jean-denis.courcol@epfl.ch>
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Maintainer-email: Open Brain Institute <jean-denis.courcol@epfl.ch>
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"cells": [
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"cell_type": "code",
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"execution_count": 1,
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"id": "7eb47475-67c6-499a-a2b4-19f8a64974d0",
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"metadata": {},
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"outputs": [],
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"source": [
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"import obi_auth\n",
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"\n",
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"from obi_notebook import get_entities, get_projects\n",
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"\n",
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"environment_str = \"staging\""
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"cell_type": "markdown",
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"id": "4d984b92-cadd-4b07-9813-b2333272610f",
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"metadata": {},
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"source": [
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"get authentication token for production"
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]
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"cell_type": "code",
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"execution_count": 2,
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"id": "323cb45c-91e3-451f-8a80-374e61433d31",
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"metadata": {},
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"outputs": [],
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"source": [
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"token = obi_auth.get_token(environment=environment_str)"
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"cell_type": "markdown",
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"id": "b60e8643-3ad5-4619-a052-5bd8b64713fd",
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"metadata": {},
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"source": [
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"a widget to select project to use"
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"cell_type": "code",
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"execution_count": 3,
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"id": "77c47560-1163-4466-83fc-43abc6e0801a",
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"metadata": {},
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"outputs": [
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "639a72897c7045f78bb7aea5afbec767",
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"version_major": 2,
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"version_minor": 0
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"text/plain": [
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"Dropdown(description='Select:', options=(('Proximal vs. distal inhibition', {'id': '32008ab5-76cf-47cd-b98b-a5…"
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"source": [
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"project_context = get_projects.get_projects(token, env=\"staging\")"
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"cell_type": "code",
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"execution_count": 4,
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"id": "d538dcac-1bdc-496b-8840-a7b32ea842ed",
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"data": {
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"text/plain": [
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"ProjectContext(project_id=UUID('32008ab5-76cf-47cd-b98b-a5013b30b533'), virtual_lab_id=UUID('1d8cccc0-f992-46aa-aac6-88e63c914314'), environment=<DeploymentEnvironment.staging: 'staging'>)"
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"execution_count": 4,
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"output_type": "execute_result"
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"source": [
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"cell_type": "code",
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"execution_count": 5,
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"id": "93029f77-d71f-40f4-8c4d-9f23d2b650bc",
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "e4b6463129a546d394d57efc46d07d7c",
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"version_major": 2,
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"version_minor": 0
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},
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"text/plain": [
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"HBox(children=(Dropdown(description='Scale:', index=1, options=('pair', 'small', 'microcircuit', 'region', 'sy…"
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"metadata": {},
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"output_type": "display_data"
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "9201fb70a891499cadada69780277194",
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"version_major": 2,
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"metadata": {},
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"output_type": "display_data"
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"source": [
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"circuit_ids = []\n",
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"circuit_ids = get_entities.get_entities(\n",
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" \"circuit\",\n",
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" token,\n",
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" circuit_ids,\n",
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" return_entities=False,\n",
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" multi_select=True,\n",
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" show_pages=True,\n",
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" project_context=project_context,\n",
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" page_size=10,\n",
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" default_scale=\"small\",\n",
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" exclude_scales=[\"single\"],\n",
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" add_columns=[\"subject.name\"],\n",
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")"
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"cell_type": "code",
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"execution_count": 9,
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"id": "da699ed4-39fd-4602-b54d-58a0b58c2539",
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"data": {
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"text/plain": [
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"['b86271b6-c56f-4c26-b502-05ef5bb514b6',\n",
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" '3877500c-126d-410c-aa09-e44831464e80',\n",
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" 'd66cea8b-5c9d-4bfb-bbfd-ca3d5fb5f12c']"
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"execution_count": 9,
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"cell_type": "code",
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"execution_count": 6,
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"id": "a5f5445d-a61a-4fbe-962f-51e701434771",
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "5fb0a08d2ce94d58a039c47fdd2f217f",
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"version_major": 2,
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"text/plain": [
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"HBox(children=(Combobox(value='', description='M-Type:', ensure_option=True, options=('A_BC', 'A_BFP', 'ACB_CT…"
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"data": {
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"application/vnd.jupyter.widget-view+json": {
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"model_id": "a0c7ca20d54946f2af3e181c3adb3d70",
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"version_major": 2,
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"text/plain": [
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"Output()"
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}
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"source": [
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"morph_ids = []\n",
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"morph_ids = get_entities.get_entities(\n",
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" \"cell-morphology\",\n",
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" token,\n",
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" morph_ids,\n",
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" return_entities=False,\n",
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" multi_select=True,\n",
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" show_pages=True,\n",
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" project_context=project_context,\n",
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" page_size=100,\n",
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" add_columns=[\"mtypes\"],\n",
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"execution_count": 7,
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"id": "2c9d28c4",
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"data": {
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"text/plain": [
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"['50248fe3-83bd-4c88-917b-63bcf0e01385',\n",
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" '1c8ce2b1-3da1-4953-9b1b-bee8656000c4',\n",
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" '15d02969-1e40-40ba-9081-d475d05897fd']"
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"execution_count": 7,
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"source": [
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"cell_type": "code",
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"execution_count": 10,
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"id": "90757b52",
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"model_id": "c2a91b53873b4e1fa54c161a59830f6b",
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"version_major": 2,
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"text/plain": [
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"HBox(children=(Combobox(value='', description='EM-Dataset:', ensure_option=True, options=('Portion 65 of the I…"
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"model_id": "a08fd579c61b4377a0dd01478a5951be",
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"source": [
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"cell_mesh_ids = []\n",
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"circuit_ids = get_entities.get_entities(\n",
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" \"em-cell-mesh\",\n",
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" token,\n",
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filters_dict["scale"] = scale_filter
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Metadata-Version: 2.4
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Name: obi_notebook
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Version: 0.2.
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Version: 0.2.dev2
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Summary: convenience functions for OBI notebooks
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Author-email: Open Brain Institute <jean-denis.courcol@epfl.ch>
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|
{obi_notebook-0.2.dev1 → obi_notebook-0.2.dev2}/src/obi_notebook.egg-info/dependency_links.txt
RENAMED
|
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|