numba-mpi 1.1.5__tar.gz → 1.1.7__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (68) hide show
  1. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/.github/workflows/readme_snippets.yml +1 -1
  2. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/.github/workflows/tests+pypi.yml +25 -36
  3. numba_mpi-1.1.7/.github/workflows/urlcheck.yml +24 -0
  4. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/.pre-commit-config.yaml +1 -1
  5. {numba_mpi-1.1.5/numba_mpi.egg-info → numba_mpi-1.1.7}/PKG-INFO +21 -23
  6. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/README.md +7 -9
  7. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/common.py +2 -1
  8. {numba_mpi-1.1.5 → numba_mpi-1.1.7/numba_mpi.egg-info}/PKG-INFO +21 -23
  9. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi.egg-info/SOURCES.txt +3 -1
  10. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi.egg-info/requires.txt +4 -1
  11. numba_mpi-1.1.7/pyproject.toml +45 -0
  12. numba_mpi-1.1.7/tests/conftest.py +7 -0
  13. numba_mpi-1.1.5/setup.py +0 -38
  14. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/.github/numba_mpi_logo.png +0 -0
  15. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/.github/numba_mpi_logo.svg +0 -0
  16. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/.github/workflows/stale.yml +0 -0
  17. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/.gitignore +0 -0
  18. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/.vscode/settings.json +0 -0
  19. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/.zenodo.json +0 -0
  20. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/CITATION.cff +0 -0
  21. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/CODE_OF_CONDUCT.md +0 -0
  22. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/LICENSE +0 -0
  23. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/__init__.py +0 -0
  24. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/__init__.py +0 -0
  25. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/allreduce.py +0 -0
  26. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/barrier.py +0 -0
  27. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/bcast.py +0 -0
  28. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/initialized.py +0 -0
  29. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/irecv.py +0 -0
  30. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/isend.py +0 -0
  31. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/operator.py +0 -0
  32. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/query_thread.py +0 -0
  33. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/rank.py +0 -0
  34. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/recv.py +0 -0
  35. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/reduce.py +0 -0
  36. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/requests.py +0 -0
  37. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/scatter_gather.py +0 -0
  38. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/send.py +0 -0
  39. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/size.py +0 -0
  40. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/api/wtime.py +0 -0
  41. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/utils.py +0 -0
  42. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi.egg-info/dependency_links.txt +0 -0
  43. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi.egg-info/top_level.txt +0 -0
  44. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/setup.cfg +0 -0
  45. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/__init__.py +0 -0
  46. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_allreduce.py +0 -0
  47. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_barrier.py +0 -0
  48. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_bcast.py +0 -0
  49. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_init.py +0 -0
  50. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_isend_irecv.py +0 -0
  51. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_query_thread.py +0 -0
  52. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_rank.py +0 -0
  53. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_reduce.py +0 -0
  54. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_scatter_gather.py +0 -0
  55. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_send_recv.py +0 -0
  56. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_size.py +0 -0
  57. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/api/test_wtime.py +0 -0
  58. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/common.py +0 -0
  59. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/paper_listings/exchange.py +0 -0
  60. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/paper_listings/hello.py +0 -0
  61. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/paper_listings/mpi4py_with_error.py +0 -0
  62. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/paper_listings/numba_mpi.py +0 -0
  63. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/paper_listings/py-pde.py +0 -0
  64. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/paper_listings/test.py +0 -0
  65. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/paper_listings/timing.py +0 -0
  66. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/test_paper_listings.py +0 -0
  67. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/test_version.py +0 -0
  68. {numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/utils.py +0 -0
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/.github/workflows/readme_snippets.yml RENAMED
@@ -19,7 +19,7 @@ jobs:
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  - uses: actions/checkout@v4
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  - uses: actions/setup-python@v5
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  with:
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- python-version: "3.10"
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+ python-version: "3.13"
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  - uses: mpi4py/setup-mpi@v1
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  - run: pip install -e .
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  - run: pip install pytest-codeblocks pytest matplotlib
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/.github/workflows/tests+pypi.yml RENAMED
@@ -19,21 +19,15 @@ jobs:
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  runs-on: ubuntu-latest
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  steps:
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  - uses: actions/checkout@v4
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- - uses: mpi4py/setup-mpi@v1
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- - name: Set up Python
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- uses: actions/setup-python@v5
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+ - uses: actions/setup-python@v5
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  with:
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- python-version: "3.10"
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- - name: Install dependencies
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- run: |
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- python -m pip install --upgrade pip
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- pip install pylint==2.14.5
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- python setup.py egg_info
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- ex -sc 'g/^\[tests\]$/d' -cx numba_mpi.egg-info/requires.txt
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- pip install -r numba_mpi.egg-info/requires.txt
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- - name: Analysing the code with pylint
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- run: |
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- pylint --unsafe-load-any-extension=y --disable=fixme,duplicate-code $(git ls-files '*.py' | grep -v -e ^tests/paper_listings)
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+ python-version: "3.13"
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+ - uses: mpi4py/setup-mpi@v1
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+ - run: |
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+ pip install pylint
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+ pip install -e .[tests,CI_version_pins]
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+ - run: |
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+ pylint --ignored-modules=mpi4py --disable=fixme,duplicate-code $(git ls-files '*.py' | grep -v -e ^tests/paper_listings)
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  precommit:
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  runs-on: ubuntu-latest
@@ -65,7 +59,7 @@ jobs:
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  - name: Build
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  run: |
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  pip install pdoc
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- pip install -e .
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+ pip install -e .[CI_version_pins]
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  PDOC_ALLOW_EXEC=1 python -We -m pdoc -o html numba_mpi
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  - name: Deploy
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  if: github.ref == 'refs/heads/main'
@@ -91,39 +85,37 @@ jobs:
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  mpi-np: [2, 3]
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  platform:
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  - ubuntu-latest
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+ - ubuntu-24.04-arm
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  - windows-latest
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- - macos-13 # arch: Intel
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+ - macos-15-intel # arch: Intel
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  - macos-15 # arch: arm64
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- python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
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+ python-version: ["3.10", "3.11", "3.12", "3.13"]
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  mpi: [ 'mpich', 'openmpi', 'msmpi', 'intelmpi']
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  exclude:
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- - platform: macos-13
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+ - platform: macos-15-intel
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  mpi: msmpi
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- - platform: macos-13
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+ - platform: macos-15-intel
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  mpi: intelmpi
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- - platform: macos-13 # TODO: # 163
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- mpi: openmpi
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  - platform: macos-15
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  mpi: msmpi
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  - platform: macos-15
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  mpi: intelmpi
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- - platform: macos-15
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+ - platform: macos-15-intel # TODO: # 163
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+ mpi: openmpi
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+ - platform: macos-15 # TODO: # 163
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  mpi: openmpi
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  - platform: ubuntu-latest
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  mpi: msmpi
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- - platform: ubuntu-latest # TODO: #162
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- mpi: mpich
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+ - platform: ubuntu-24.04-arm
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+ mpi: msmpi
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+ - platform: ubuntu-24.04-arm
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+ mpi: intelmpi
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  - platform: windows-latest
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  mpi: mpich
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  - platform: windows-latest
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  mpi: openmpi
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  - platform: windows-latest
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  mpi: intelmpi
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-
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- # https://github.com/numba-mpi/numba-mpi/issues/69
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- - platform: ubuntu-latest
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- python-version: 3.9
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- mpi: mpich
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  fail-fast: false
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  runs-on: ${{ matrix.platform }}
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  steps:
@@ -134,14 +126,14 @@ jobs:
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  - uses: mpi4py/setup-mpi@v1
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  with:
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  mpi: ${{ matrix.mpi }}
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- - if: ${{ matrix.platform == 'macos-15' }}
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- run: echo DYLD_FALLBACK_LIBRARY_PATH="/opt/homebrew/lib:/usr/lib:$DYLD_FALLBACK_LIBRARY_PATH" >> $GITHUB_ENV
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+ - if: startsWith(matrix.platform, 'macos-')
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+ run: echo DYLD_FALLBACK_LIBRARY_PATH="/opt/homebrew/lib:/usr/local/lib:/usr/lib:$DYLD_FALLBACK_LIBRARY_PATH" >> $GITHUB_ENV
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  - if: matrix.mpi == 'intelmpi'
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  run: |
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  # checking if multiple MPI libs are OK
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  sudo apt-get install mpi-default-bin
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  mpiexec python -c "import os; assert 'I_MPI_ROOT' in os.environ"
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- - run: pip install -e .[tests]
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+ - run: pip install -e .[tests,CI_version_pins]
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  - run: python -We -c "import mpi4py"
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  - run: python -We -c "import numba_mpi"
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  - run: mpiexec -n ${{ matrix.mpi-np }} pytest --durations=10 -p no:unraisableexception -We
@@ -169,10 +161,7 @@ jobs:
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  - run: twine check --strict dist/*
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  - run: |
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- python setup.py egg_info
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- ex -sc 'g/^\[tests\]$/d' -cx numba_mpi.egg-info/requires.txt
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- pip install -r numba_mpi.egg-info/requires.txt
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- pip install --no-index --find-links file:./dist numba-mpi
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+ pip install --find-links file:./dist numba-mpi
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  cd /tmp # make sure local files are not picked up
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  python -We -c "import numba_mpi"
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numba_mpi-1.1.7/.github/workflows/urlcheck.yml ADDED
@@ -0,0 +1,24 @@
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+ name: urlcheck
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+
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+ on:
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+ push:
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+ branches: [ main ]
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+ pull_request:
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+ branches: [ main ]
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+ schedule:
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+ - cron: '0 13 * * 4'
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+
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+ jobs:
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+ url-check:
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+ runs-on: ubuntu-24.04
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+ steps:
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+ - uses: actions/checkout@v4.1.6
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+ - uses: urlstechie/urlchecker-action@master
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+ with:
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+ file_types: .md,.py,.json,.yaml,.yml,.toml,.txt,.cff
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+ print_all: false
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+ verbose: true
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+ timeout: 7
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+ retry_count: 3
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+ exclude_files: .github/workflows/urlcheck.yml
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+ exclude_urls: https://www.gnu.org/licenses/gpl-3.0.html
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/.pre-commit-config.yaml RENAMED
@@ -4,7 +4,7 @@ default_stages: [commit]
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  repos:
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  - repo: https://github.com/psf/black
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- rev: 24.1.1
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+ rev: 25.11.0
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  hooks:
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  - id: black
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  exclude: ^tests/paper_listings/
{numba_mpi-1.1.5/numba_mpi.egg-info → numba_mpi-1.1.7}/PKG-INFO RENAMED
@@ -1,13 +1,21 @@
1
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  Metadata-Version: 2.4
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  Name: numba-mpi
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- Version: 1.1.5
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+ Version: 1.1.7
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  Summary: Numba @jittable MPI wrappers tested on Linux, macOS and Windows
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- Home-page: https://github.com/numba-mpi/numba-mpi
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- Author: https://github.com/numba-mpi/numba-mpi/graphs/contributors
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- License: GPL v3
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+ Author-email: "https://github.com/numba-mpi/numba-mpi/graphs/contributors" <sylwester.arabas@agh.edu.pl>
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+ License-Expression: GPL-3.0-only
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  Project-URL: Tracker, https://github.com/numba-mpi/numba-mpi/issues
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  Project-URL: Documentation, https://numba-mpi.github.io/numba-mpi
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  Project-URL: Source, https://github.com/numba-mpi/numba-mpi
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+ Keywords: MPI,numba
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+ Classifier: Development Status :: 4 - Beta
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Topic :: Scientific/Engineering
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+ Classifier: Topic :: Scientific/Engineering :: Mathematics
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+ Classifier: Topic :: Scientific/Engineering :: Physics
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+ Classifier: Topic :: Software Development :: Libraries
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  Requires-Python: >=3.8
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
@@ -16,19 +24,11 @@ Requires-Dist: numpy
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  Requires-Dist: mpi4py
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  Requires-Dist: psutil
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  Provides-Extra: tests
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- Requires-Dist: pytest<8.0.0; extra == "tests"
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+ Requires-Dist: pytest; extra == "tests"
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  Requires-Dist: py-pde; extra == "tests"
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- Dynamic: author
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- Dynamic: description
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- Dynamic: description-content-type
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- Dynamic: home-page
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- Dynamic: license
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+ Provides-Extra: ci-version-pins
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+ Requires-Dist: pytest==9.0.1; extra == "ci-version-pins"
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  Dynamic: license-file
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- Dynamic: project-url
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- Dynamic: provides-extra
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- Dynamic: requires-dist
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- Dynamic: requires-python
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- Dynamic: summary
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  # <img src="https://raw.githubusercontent.com/numba-mpi/numba-mpi/main/.github/numba_mpi_logo.png" width=128 height=142 alt="numba-mpi logo"> numba-mpi
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@@ -37,7 +37,7 @@ Dynamic: summary
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  [![Linux OK](https://img.shields.io/static/v1?label=Linux&logo=Linux&color=yellow&message=%E2%9C%93)](https://en.wikipedia.org/wiki/Linux)
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  [![macOS OK](https://img.shields.io/static/v1?label=macOS&logo=Apple&color=silver&message=%E2%9C%93)](https://en.wikipedia.org/wiki/macOS)
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  [![Windows OK](https://img.shields.io/static/v1?label=Windows&logo=Windows&color=white&message=%E2%9C%93)](https://en.wikipedia.org/wiki/Windows)
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- [![Github Actions Status](https://github.com/numba-mpi/numba-mpi/workflows/tests+pypi/badge.svg?branch=main)](https://github.com/numba-mpi/numba-mpi/actions/workflows/tests+pypi.yml)
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+ [![Github Actions Status](https://github.com/numba-mpi/numba-mpi/actions/workflows/tests+pypi.yml/badge.svg?branch=main)](https://github.com/numba-mpi/numba-mpi/actions/workflows/tests+pypi.yml)
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  [![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://GitHub.com/numba-mpi/numba-mpi/graphs/commit-activity)
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  [![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.html)
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  [![PyPI version](https://badge.fury.io/py/numba-mpi.svg)](https://pypi.org/project/numba-mpi)
@@ -62,9 +62,10 @@ Packages can be obtained from
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  numba-mpi is a pure-Python package.
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  The codebase includes a test suite used through the GitHub Actions workflows ([thanks to mpi4py's setup-mpi](https://github.com/mpi4py/setup-mpi)!)
65
- for automated testing on: Linux ([MPICH](https://www.mpich.org/), [OpenMPI](https://www.open-mpi.org/doc/)
65
+ for automated testing on: Intel Linux ([MPICH](https://www.mpich.org/), [OpenMPI](https://www.open-mpi.org/doc/)
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  & [Intel MPI](https://www.intel.com/content/www/us/en/developer/tools/oneapi/mpi-library.html)),
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- macOS ([MPICH](https://www.mpich.org/) & [OpenMPI](https://www.open-mpi.org/doc/)) and
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+ ARM Linux ([MPICH](https://www.mpich.org/) & [OpenMPI](https://www.open-mpi.org/doc/)),
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+ Intel and ARM macOS ([MPICH](https://www.mpich.org/)) and
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  Windows ([MS MPI](https://docs.microsoft.com/en-us/message-passing-interface/microsoft-mpi)). Note, that some of those
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  combinations may not be fully supported yet - see [Known Issues](#known-issues) for more information.
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@@ -172,10 +173,7 @@ if numba_mpi.rank() == 0:
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  **NOTE**: Issues listed below only relate to combinations of platforms and MPI distributions that we target to support, but due to various reason are currently not working and are temporarily excluded from automated testing:
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175
- - tests on Ubuntu 2024.4 that use MPICH are not run due to failures caused by newer version of MPICH (`4.2.0`); note, that previous tests ran
176
- using version `4.0.2` of MPICH (that is installed by default on Ubuntu 2022.4 using `apt`) were passing (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/162) - TODO #162),
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- - tests on Intel MacOS (v13) that use OpenMPI are currently not run due to failures being under investigation (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/163) - TODO #163),
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- - `numba-mpi` currently does not support ARM-based MacOS, due to required code improvement (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/164) - TODO #164).
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+ - tests on MacOS (both Intel- and ARM-based) that use OpenMPI are currently not run due to failures being under investigation (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/163) - TODO #163).
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  ### MPI resources on the web:
181
179
 
@@ -192,7 +190,7 @@ using version `4.0.2` of MPICH (that is installed by default on Ubuntu 2022.4 us
192
190
  - Python/JAX: https://mpi4jax.readthedocs.io
193
191
  - Julia: https://juliaparallel.org/MPI.jl
194
192
  - Rust: https://docs.rs/mpi
195
- - C++: https://boost.org/doc/html/mpi.html
193
+ - C++: https://www.boost.org/doc/libs/latest/doc/html/mpi.html
196
194
  - R: https://cran.r-project.org/web/packages/Rmpi
197
195
 
198
196
  ### Acknowledgements:
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/README.md RENAMED
@@ -1,11 +1,11 @@
1
- # <img src="https://raw.githubusercontent.com/numba-mpi/numba-mpi/main/.github/numba_mpi_logo.svg" width=128 height=142 alt="numba-mpi logo"> numba-mpi
1
+ # <img src="https://raw.githubusercontent.com/numba-mpi/numba-mpi/main/.github/numba_mpi_logo.png" width=128 height=142 alt="numba-mpi logo"> numba-mpi
2
2
 
3
3
  [![Python 3](https://img.shields.io/static/v1?label=Python&logo=Python&color=3776AB&message=3)](https://www.python.org/)
4
4
  [![LLVM](https://img.shields.io/static/v1?label=LLVM&logo=LLVM&color=gold&message=Numba)](https://numba.pydata.org)
5
5
  [![Linux OK](https://img.shields.io/static/v1?label=Linux&logo=Linux&color=yellow&message=%E2%9C%93)](https://en.wikipedia.org/wiki/Linux)
6
6
  [![macOS OK](https://img.shields.io/static/v1?label=macOS&logo=Apple&color=silver&message=%E2%9C%93)](https://en.wikipedia.org/wiki/macOS)
7
7
  [![Windows OK](https://img.shields.io/static/v1?label=Windows&logo=Windows&color=white&message=%E2%9C%93)](https://en.wikipedia.org/wiki/Windows)
8
- [![Github Actions Status](https://github.com/numba-mpi/numba-mpi/workflows/tests+pypi/badge.svg?branch=main)](https://github.com/numba-mpi/numba-mpi/actions/workflows/tests+pypi.yml)
8
+ [![Github Actions Status](https://github.com/numba-mpi/numba-mpi/actions/workflows/tests+pypi.yml/badge.svg?branch=main)](https://github.com/numba-mpi/numba-mpi/actions/workflows/tests+pypi.yml)
9
9
  [![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://GitHub.com/numba-mpi/numba-mpi/graphs/commit-activity)
10
10
  [![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.html)
11
11
  [![PyPI version](https://badge.fury.io/py/numba-mpi.svg)](https://pypi.org/project/numba-mpi)
@@ -30,9 +30,10 @@ Packages can be obtained from
30
30
 
31
31
  numba-mpi is a pure-Python package.
32
32
  The codebase includes a test suite used through the GitHub Actions workflows ([thanks to mpi4py's setup-mpi](https://github.com/mpi4py/setup-mpi)!)
33
- for automated testing on: Linux ([MPICH](https://www.mpich.org/), [OpenMPI](https://www.open-mpi.org/doc/)
33
+ for automated testing on: Intel Linux ([MPICH](https://www.mpich.org/), [OpenMPI](https://www.open-mpi.org/doc/)
34
34
  & [Intel MPI](https://www.intel.com/content/www/us/en/developer/tools/oneapi/mpi-library.html)),
35
- macOS ([MPICH](https://www.mpich.org/) & [OpenMPI](https://www.open-mpi.org/doc/)) and
35
+ ARM Linux ([MPICH](https://www.mpich.org/) & [OpenMPI](https://www.open-mpi.org/doc/)),
36
+ Intel and ARM macOS ([MPICH](https://www.mpich.org/)) and
36
37
  Windows ([MS MPI](https://docs.microsoft.com/en-us/message-passing-interface/microsoft-mpi)). Note, that some of those
37
38
  combinations may not be fully supported yet - see [Known Issues](#known-issues) for more information.
38
39
 
@@ -140,10 +141,7 @@ if numba_mpi.rank() == 0:
140
141
 
141
142
  **NOTE**: Issues listed below only relate to combinations of platforms and MPI distributions that we target to support, but due to various reason are currently not working and are temporarily excluded from automated testing:
142
143
 
143
- - tests on Ubuntu 2024.4 that use MPICH are not run due to failures caused by newer version of MPICH (`4.2.0`); note, that previous tests ran
144
- using version `4.0.2` of MPICH (that is installed by default on Ubuntu 2022.4 using `apt`) were passing (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/162) - TODO #162),
145
- - tests on Intel MacOS (v13) that use OpenMPI are currently not run due to failures being under investigation (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/163) - TODO #163),
146
- - `numba-mpi` currently does not support ARM-based MacOS, due to required code improvement (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/164) - TODO #164).
144
+ - tests on MacOS (both Intel- and ARM-based) that use OpenMPI are currently not run due to failures being under investigation (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/163) - TODO #163).
147
145
 
148
146
  ### MPI resources on the web:
149
147
 
@@ -160,7 +158,7 @@ using version `4.0.2` of MPICH (that is installed by default on Ubuntu 2022.4 us
160
158
  - Python/JAX: https://mpi4jax.readthedocs.io
161
159
  - Julia: https://juliaparallel.org/MPI.jl
162
160
  - Rust: https://docs.rs/mpi
163
- - C++: https://boost.org/doc/html/mpi.html
161
+ - C++: https://www.boost.org/doc/libs/latest/doc/html/mpi.html
164
162
  - R: https://cran.r-project.org/web/packages/Rmpi
165
163
 
166
164
  ### Acknowledgements:
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/common.py RENAMED
@@ -76,7 +76,8 @@ if LIB is None:
76
76
  if sys.platform == "darwin":
77
77
  raise RuntimeError(
78
78
  """MPI library not found, if MPI was installed with Homebrew, export the following:
79
- DYLD_FALLBACK_LIBRARY_PATH="/opt/homebrew/lib:/usr/lib:$DYLD_FALLBACK_LIBRARY_PATH
79
+ ARM: DYLD_FALLBACK_LIBRARY_PATH="/opt/homebrew/lib:/usr/lib:$DYLD_FALLBACK_LIBRARY_PATH
80
+ Intel: DYLD_FALLBACK_LIBRARY_PATH="/usr/local/lib:/usr/lib:$DYLD_FALLBACK_LIBRARY_PATH
80
81
  """
81
82
  )
82
83
  raise RuntimeError("no MPI library found")
{numba_mpi-1.1.5 → numba_mpi-1.1.7/numba_mpi.egg-info}/PKG-INFO RENAMED
@@ -1,13 +1,21 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: numba-mpi
3
- Version: 1.1.5
3
+ Version: 1.1.7
4
4
  Summary: Numba @jittable MPI wrappers tested on Linux, macOS and Windows
5
- Home-page: https://github.com/numba-mpi/numba-mpi
6
- Author: https://github.com/numba-mpi/numba-mpi/graphs/contributors
7
- License: GPL v3
5
+ Author-email: "https://github.com/numba-mpi/numba-mpi/graphs/contributors" <sylwester.arabas@agh.edu.pl>
6
+ License-Expression: GPL-3.0-only
8
7
  Project-URL: Tracker, https://github.com/numba-mpi/numba-mpi/issues
9
8
  Project-URL: Documentation, https://numba-mpi.github.io/numba-mpi
10
9
  Project-URL: Source, https://github.com/numba-mpi/numba-mpi
10
+ Keywords: MPI,numba
11
+ Classifier: Development Status :: 4 - Beta
12
+ Classifier: Intended Audience :: Science/Research
13
+ Classifier: Operating System :: OS Independent
14
+ Classifier: Programming Language :: Python :: 3
15
+ Classifier: Topic :: Scientific/Engineering
16
+ Classifier: Topic :: Scientific/Engineering :: Mathematics
17
+ Classifier: Topic :: Scientific/Engineering :: Physics
18
+ Classifier: Topic :: Software Development :: Libraries
11
19
  Requires-Python: >=3.8
12
20
  Description-Content-Type: text/markdown
13
21
  License-File: LICENSE
@@ -16,19 +24,11 @@ Requires-Dist: numpy
16
24
  Requires-Dist: mpi4py
17
25
  Requires-Dist: psutil
18
26
  Provides-Extra: tests
19
- Requires-Dist: pytest<8.0.0; extra == "tests"
27
+ Requires-Dist: pytest; extra == "tests"
20
28
  Requires-Dist: py-pde; extra == "tests"
21
- Dynamic: author
22
- Dynamic: description
23
- Dynamic: description-content-type
24
- Dynamic: home-page
25
- Dynamic: license
29
+ Provides-Extra: ci-version-pins
30
+ Requires-Dist: pytest==9.0.1; extra == "ci-version-pins"
26
31
  Dynamic: license-file
27
- Dynamic: project-url
28
- Dynamic: provides-extra
29
- Dynamic: requires-dist
30
- Dynamic: requires-python
31
- Dynamic: summary
32
32
 
33
33
  # <img src="https://raw.githubusercontent.com/numba-mpi/numba-mpi/main/.github/numba_mpi_logo.png" width=128 height=142 alt="numba-mpi logo"> numba-mpi
34
34
 
@@ -37,7 +37,7 @@ Dynamic: summary
37
37
  [![Linux OK](https://img.shields.io/static/v1?label=Linux&logo=Linux&color=yellow&message=%E2%9C%93)](https://en.wikipedia.org/wiki/Linux)
38
38
  [![macOS OK](https://img.shields.io/static/v1?label=macOS&logo=Apple&color=silver&message=%E2%9C%93)](https://en.wikipedia.org/wiki/macOS)
39
39
  [![Windows OK](https://img.shields.io/static/v1?label=Windows&logo=Windows&color=white&message=%E2%9C%93)](https://en.wikipedia.org/wiki/Windows)
40
- [![Github Actions Status](https://github.com/numba-mpi/numba-mpi/workflows/tests+pypi/badge.svg?branch=main)](https://github.com/numba-mpi/numba-mpi/actions/workflows/tests+pypi.yml)
40
+ [![Github Actions Status](https://github.com/numba-mpi/numba-mpi/actions/workflows/tests+pypi.yml/badge.svg?branch=main)](https://github.com/numba-mpi/numba-mpi/actions/workflows/tests+pypi.yml)
41
41
  [![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://GitHub.com/numba-mpi/numba-mpi/graphs/commit-activity)
42
42
  [![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.html)
43
43
  [![PyPI version](https://badge.fury.io/py/numba-mpi.svg)](https://pypi.org/project/numba-mpi)
@@ -62,9 +62,10 @@ Packages can be obtained from
62
62
 
63
63
  numba-mpi is a pure-Python package.
64
64
  The codebase includes a test suite used through the GitHub Actions workflows ([thanks to mpi4py's setup-mpi](https://github.com/mpi4py/setup-mpi)!)
65
- for automated testing on: Linux ([MPICH](https://www.mpich.org/), [OpenMPI](https://www.open-mpi.org/doc/)
65
+ for automated testing on: Intel Linux ([MPICH](https://www.mpich.org/), [OpenMPI](https://www.open-mpi.org/doc/)
66
66
  & [Intel MPI](https://www.intel.com/content/www/us/en/developer/tools/oneapi/mpi-library.html)),
67
- macOS ([MPICH](https://www.mpich.org/) & [OpenMPI](https://www.open-mpi.org/doc/)) and
67
+ ARM Linux ([MPICH](https://www.mpich.org/) & [OpenMPI](https://www.open-mpi.org/doc/)),
68
+ Intel and ARM macOS ([MPICH](https://www.mpich.org/)) and
68
69
  Windows ([MS MPI](https://docs.microsoft.com/en-us/message-passing-interface/microsoft-mpi)). Note, that some of those
69
70
  combinations may not be fully supported yet - see [Known Issues](#known-issues) for more information.
70
71
 
@@ -172,10 +173,7 @@ if numba_mpi.rank() == 0:
172
173
 
173
174
  **NOTE**: Issues listed below only relate to combinations of platforms and MPI distributions that we target to support, but due to various reason are currently not working and are temporarily excluded from automated testing:
174
175
 
175
- - tests on Ubuntu 2024.4 that use MPICH are not run due to failures caused by newer version of MPICH (`4.2.0`); note, that previous tests ran
176
- using version `4.0.2` of MPICH (that is installed by default on Ubuntu 2022.4 using `apt`) were passing (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/162) - TODO #162),
177
- - tests on Intel MacOS (v13) that use OpenMPI are currently not run due to failures being under investigation (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/163) - TODO #163),
178
- - `numba-mpi` currently does not support ARM-based MacOS, due to required code improvement (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/164) - TODO #164).
176
+ - tests on MacOS (both Intel- and ARM-based) that use OpenMPI are currently not run due to failures being under investigation (see [related issue](https://github.com/numba-mpi/numba-mpi/issues/163) - TODO #163).
179
177
 
180
178
  ### MPI resources on the web:
181
179
 
@@ -192,7 +190,7 @@ using version `4.0.2` of MPICH (that is installed by default on Ubuntu 2022.4 us
192
190
  - Python/JAX: https://mpi4jax.readthedocs.io
193
191
  - Julia: https://juliaparallel.org/MPI.jl
194
192
  - Rust: https://docs.rs/mpi
195
- - C++: https://boost.org/doc/html/mpi.html
193
+ - C++: https://www.boost.org/doc/libs/latest/doc/html/mpi.html
196
194
  - R: https://cran.r-project.org/web/packages/Rmpi
197
195
 
198
196
  ### Acknowledgements:
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi.egg-info/SOURCES.txt RENAMED
@@ -5,12 +5,13 @@ CITATION.cff
5
5
  CODE_OF_CONDUCT.md
6
6
  LICENSE
7
7
  README.md
8
- setup.py
8
+ pyproject.toml
9
9
  .github/numba_mpi_logo.png
10
10
  .github/numba_mpi_logo.svg
11
11
  .github/workflows/readme_snippets.yml
12
12
  .github/workflows/stale.yml
13
13
  .github/workflows/tests+pypi.yml
14
+ .github/workflows/urlcheck.yml
14
15
  .vscode/settings.json
15
16
  numba_mpi/__init__.py
16
17
  numba_mpi/common.py
@@ -39,6 +40,7 @@ numba_mpi/api/size.py
39
40
  numba_mpi/api/wtime.py
40
41
  tests/__init__.py
41
42
  tests/common.py
43
+ tests/conftest.py
42
44
  tests/test_paper_listings.py
43
45
  tests/test_version.py
44
46
  tests/utils.py
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi.egg-info/requires.txt RENAMED
@@ -3,6 +3,9 @@ numpy
3
3
  mpi4py
4
4
  psutil
5
5
 
6
+ [CI_version_pins]
7
+ pytest==9.0.1
8
+
6
9
  [tests]
7
- pytest<8.0.0
10
+ pytest
8
11
  py-pde
numba_mpi-1.1.7/pyproject.toml ADDED
@@ -0,0 +1,45 @@
1
+ [tool.isort]
2
+ profile = "black"
3
+
4
+ [tool.setuptools_scm]
5
+ local_scheme = "no-local-version"
6
+ version_scheme = "post-release"
7
+
8
+ [tool.setuptools.packages.find]
9
+ include = ["numba_mpi", "numba_mpi*"]
10
+
11
+ [build-system]
12
+ requires = ['setuptools==80.9.0', 'setuptools-scm==9.0.1']
13
+ build-backend = "setuptools.build_meta"
14
+
15
+ [project]
16
+ name = "numba-mpi"
17
+ description = "Numba @jittable MPI wrappers tested on Linux, macOS and Windows"
18
+ keywords = ["MPI", "numba"]
19
+ license = "GPL-3.0-only"
20
+ readme = "README.md"
21
+ classifiers = [
22
+ "Development Status :: 4 - Beta",
23
+ "Intended Audience :: Science/Research",
24
+ "Operating System :: OS Independent",
25
+ "Programming Language :: Python :: 3",
26
+ "Topic :: Scientific/Engineering",
27
+ "Topic :: Scientific/Engineering :: Mathematics",
28
+ "Topic :: Scientific/Engineering :: Physics",
29
+ "Topic :: Software Development :: Libraries",
30
+ ]
31
+ requires-python = ">= 3.8"
32
+ authors = [
33
+ {name = "https://github.com/numba-mpi/numba-mpi/graphs/contributors", email = "sylwester.arabas@agh.edu.pl"}
34
+ ]
35
+ dynamic = ["version"]
36
+ dependencies = ["numba", "numpy", "mpi4py", "psutil"]
37
+
38
+ [project.optional-dependencies]
39
+ "tests" = ["pytest", "py-pde"]
40
+ "CI_version_pins" = ["pytest==9.0.1"]
41
+
42
+ [project.urls]
43
+ Tracker = "https://github.com/numba-mpi/numba-mpi/issues"
44
+ Documentation = "https://numba-mpi.github.io/numba-mpi"
45
+ Source = "https://github.com/numba-mpi/numba-mpi"
numba_mpi-1.1.7/tests/conftest.py ADDED
@@ -0,0 +1,7 @@
1
+ """sanity check ensuring that pytest session was run as an MPI task with more than one worker"""
2
+
3
+ import numba_mpi
4
+
5
+ assert (
6
+ numba_mpi.size() > 1
7
+ ), "the tests require multiple MPI workers - please run with `mpirun pytest ...`"
numba_mpi-1.1.5/setup.py DELETED
@@ -1,38 +0,0 @@
1
- """the magick behind ``pip install ...``"""
2
-
3
- from setuptools import find_packages, setup
4
-
5
-
6
- def get_long_description():
7
- """returns contents of README.md file"""
8
- with open("README.md", "r", encoding="utf8") as file:
9
- long_description = file.read()
10
- long_description = long_description.replace(
11
- "numba_mpi_logo.svg", "numba_mpi_logo.png"
12
- )
13
- return long_description
14
-
15
-
16
- setup(
17
- name="numba-mpi",
18
- url="https://github.com/numba-mpi/numba-mpi",
19
- author="https://github.com/numba-mpi/numba-mpi/graphs/contributors",
20
- use_scm_version={
21
- "local_scheme": "no-local-version",
22
- "version_scheme": "post-release",
23
- },
24
- python_requires=">=3.8",
25
- setup_requires=["setuptools_scm"],
26
- license="GPL v3",
27
- description="Numba @jittable MPI wrappers tested on Linux, macOS and Windows",
28
- install_requires=("numba", "numpy", "mpi4py", "psutil"),
29
- extras_require={"tests": ("pytest<8.0.0", "py-pde")}, # TODO #122
30
- long_description=get_long_description(),
31
- long_description_content_type="text/markdown",
32
- packages=find_packages(include=["numba_mpi", "numba_mpi.*"]),
33
- project_urls={
34
- "Tracker": "https://github.com/numba-mpi/numba-mpi/issues",
35
- "Documentation": "https://numba-mpi.github.io/numba-mpi",
36
- "Source": "https://github.com/numba-mpi/numba-mpi",
37
- },
38
- )
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/.gitignore RENAMED
File without changes
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/.zenodo.json RENAMED
File without changes
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/CITATION.cff RENAMED
File without changes
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/CODE_OF_CONDUCT.md RENAMED
File without changes
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/LICENSE RENAMED
File without changes
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/numba_mpi/utils.py RENAMED
File without changes
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/setup.cfg RENAMED
File without changes
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/__init__.py RENAMED
File without changes
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/common.py RENAMED
File without changes
{numba_mpi-1.1.5 → numba_mpi-1.1.7}/tests/utils.py RENAMED
File without changes