nucleobench 2.0.2__tar.gz → 2.0.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (119) hide show
  1. {nucleobench-2.0.2 → nucleobench-2.0.3}/PKG-INFO +1 -1
  2. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench.egg-info/PKG-INFO +1 -1
  3. {nucleobench-2.0.2 → nucleobench-2.0.3}/pyproject.toml +1 -1
  4. {nucleobench-2.0.2 → nucleobench-2.0.3}/LICENSE +0 -0
  5. {nucleobench-2.0.2 → nucleobench-2.0.3}/README.md +0 -0
  6. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/__init__.py +0 -0
  7. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/__init__.py +0 -0
  8. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/argparse_lib.py +0 -0
  9. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/argparse_lib_test.py +0 -0
  10. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/attribution_lib_torch.py +0 -0
  11. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/attribution_lib_torch_test.py +0 -0
  12. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/constants.py +0 -0
  13. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/gcp_utils.py +0 -0
  14. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/gcp_utils_test.py +0 -0
  15. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/memory_utils.py +0 -0
  16. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/priority_queue.py +0 -0
  17. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/priority_queue_test.py +0 -0
  18. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/string_utils.py +0 -0
  19. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/string_utils_test.py +0 -0
  20. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/testing_utils.py +0 -0
  21. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/common/testing_utils_test.py +0 -0
  22. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/__init__.py +0 -0
  23. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/bpnet/__init__.py +0 -0
  24. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/bpnet/constants.py +0 -0
  25. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/bpnet/load_model.py +0 -0
  26. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/bpnet/model_def.py +0 -0
  27. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/bpnet/model_def_test.py +0 -0
  28. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/dummy/__init__.py +0 -0
  29. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/dummy/model_def.py +0 -0
  30. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/grelu/__init__.py +0 -0
  31. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/grelu/constants.py +0 -0
  32. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/grelu/constants_test.py +0 -0
  33. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/grelu/enformer/__init__.py +0 -0
  34. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/grelu/enformer/constants.py +0 -0
  35. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/grelu/enformer/model_def.py +0 -0
  36. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/grelu/enformer/model_def_test.py +0 -0
  37. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/grelu/model_def.py +0 -0
  38. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/malinois/__init__.py +0 -0
  39. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/malinois/load_model.py +0 -0
  40. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/malinois/model/__init__.py +0 -0
  41. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/malinois/model/basset.py +0 -0
  42. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/malinois/model/custom_layers.py +0 -0
  43. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/malinois/model/loss_functions.py +0 -0
  44. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/malinois/model/utils.py +0 -0
  45. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/malinois/model_def.py +0 -0
  46. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/malinois/model_def_test.py +0 -0
  47. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/__init__.py +0 -0
  48. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/constants.py +0 -0
  49. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/load_model.py +0 -0
  50. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/model_def.py +0 -0
  51. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/model_def_test.py +0 -0
  52. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/__init__.py +0 -0
  53. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/config.py +0 -0
  54. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/data/__init__.py +0 -0
  55. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/data/alphabet.py +0 -0
  56. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/data/constants.py +0 -0
  57. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/model/__init__.py +0 -0
  58. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/model/attention.py +0 -0
  59. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/model/constants.py +0 -0
  60. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/model/downstream.py +0 -0
  61. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/model/model.py +0 -0
  62. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/model/modules.py +0 -0
  63. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/model/rope.py +0 -0
  64. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/ribosome_loading.py +0 -0
  65. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/ribosome_loading_test.py +0 -0
  66. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/rna/rinalmo_mrl/rinalmo/utils/scaler.py +0 -0
  67. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/substring_count_net/__init__.py +0 -0
  68. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/substring_count_net/model_def.py +0 -0
  69. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/models/substring_count_net/model_def_test.py +0 -0
  70. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/__init__.py +0 -0
  71. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/__init__.py +0 -0
  72. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/ada_utils.py +0 -0
  73. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/ada_utils_test.py +0 -0
  74. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/adabeam/__init__.py +0 -0
  75. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/adabeam/adabeam.py +0 -0
  76. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/adabeam/adabeam_test.py +0 -0
  77. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/adalead/__init__.py +0 -0
  78. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/adalead/adalead_ref.py +0 -0
  79. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/adalead/adalead_ref_test.py +0 -0
  80. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/gradabeam/__init__.py +0 -0
  81. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/gradabeam/gradabeam.py +0 -0
  82. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ada/gradabeam/gradabeam_test.py +0 -0
  83. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/beam_search/__init__.py +0 -0
  84. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/beam_search/beam_ordered.py +0 -0
  85. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/beam_search/beam_ordered_test.py +0 -0
  86. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/beam_search/beam_unordered.py +0 -0
  87. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/beam_search/beam_unordered_test.py +0 -0
  88. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/beam_search/beam_utils.py +0 -0
  89. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/beam_search/beam_utils_test.py +0 -0
  90. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/directed_evolution/__init__.py +0 -0
  91. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/directed_evolution/directed_evolution.py +0 -0
  92. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/directed_evolution/directed_evolution_module.py +0 -0
  93. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/directed_evolution/directed_evolution_module_test.py +0 -0
  94. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/dummy/__init__.py +0 -0
  95. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/dummy/random_perturbation.py +0 -0
  96. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/dummy/random_perturbation_test.py +0 -0
  97. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/fastseqprop_torch/__init__.py +0 -0
  98. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/fastseqprop_torch/fs.py +0 -0
  99. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/fastseqprop_torch/fs_test.py +0 -0
  100. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/fastseqprop_torch/fs_torch_module.py +0 -0
  101. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/fastseqprop_torch/fs_torch_module_test.py +0 -0
  102. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ledidi/__init__.py +0 -0
  103. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ledidi/ledidi.py +0 -0
  104. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ledidi/ledidi_module.py +0 -0
  105. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/ledidi/ledidi_test.py +0 -0
  106. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/model_class.py +0 -0
  107. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/optimization_class.py +0 -0
  108. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/simulated_annealing/__init__.py +0 -0
  109. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/simulated_annealing/analysis.py +0 -0
  110. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/simulated_annealing/simulated_annealing.py +0 -0
  111. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/simulated_annealing/simulated_annealing_test.py +0 -0
  112. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/typing.py +0 -0
  113. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/utils.py +0 -0
  114. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench/optimizations/utils_test.py +0 -0
  115. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench.egg-info/SOURCES.txt +0 -0
  116. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench.egg-info/dependency_links.txt +0 -0
  117. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench.egg-info/requires.txt +0 -0
  118. {nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench.egg-info/top_level.txt +0 -0
  119. {nucleobench-2.0.2 → nucleobench-2.0.3}/setup.cfg +0 -0
{nucleobench-2.0.2 → nucleobench-2.0.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nucleobench
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- Version: 2.0.2
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+ Version: 2.0.3
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  Summary: Nucleobench optimizers and tasks.
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  Author-email: Move37 Labs <joel.shor@move37labs.com>
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  Project-URL: Homepage, https://github.com/move37-labs/nucleobench
{nucleobench-2.0.2 → nucleobench-2.0.3}/nucleobench.egg-info/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: nucleobench
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- Version: 2.0.2
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+ Version: 2.0.3
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  Summary: Nucleobench optimizers and tasks.
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  Author-email: Move37 Labs <joel.shor@move37labs.com>
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  Project-URL: Homepage, https://github.com/move37-labs/nucleobench
{nucleobench-2.0.2 → nucleobench-2.0.3}/pyproject.toml RENAMED
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  [project]
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  name = "nucleobench"
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- version = "2.0.2"
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+ version = "2.0.3"
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  description = "Nucleobench optimizers and tasks."
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  readme = "README.md"
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  requires-python = ">=3.10"
{nucleobench-2.0.2 → nucleobench-2.0.3}/LICENSE RENAMED
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{nucleobench-2.0.2 → nucleobench-2.0.3}/README.md RENAMED
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{nucleobench-2.0.2 → nucleobench-2.0.3}/setup.cfg RENAMED
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