npc-sync 0.2.3__tar.gz → 0.2.5__tar.gz

{npc_sync-0.2.3/src/npc_sync.egg-info → npc_sync-0.2.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: npc-sync
-Version: 0.2.3
+Version: 0.2.5
 Summary: Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.
 Author-email: Ben Hardcastle <ben.hardcastle@alleninstitue.org>
 License: MIT

{npc_sync-0.2.3 → npc_sync-0.2.5}/pyproject.toml

@@ -16,7 +16,7 @@ dependencies = [
     "scipy>=1.13.1",
     "npc-stim>=0.1.14",
 ]
-version = "0.2.3"
+version = "0.2.5"
 classifiers = [
     "Development Status :: 3 - Alpha",
     "Programming Language :: Python :: 3",

{npc_sync-0.2.3 → npc_sync-0.2.5}/src/npc_sync/sync.py

@@ -222,8 +222,8 @@ class SyncDataset:
         stim_paths: Iterable[npc_io.PathLike] | None = None,
     ) -> None:
         if isinstance(path, self.__class__):
-            self = path
-            self.dfile = path
+            self.path = path.path
+            self.dfile = path.dfile
         else:
             self.path = npc_io.from_pathlike(path)
             self.dfile = self.load(path)
@@ -360,10 +360,7 @@ class SyncDataset:
 
     @property
     def meta_data(self) -> dict[str, Any]:
-        try:
-            return eval(self.dfile["meta"][()])
-        except AttributeError:
-            return eval(self["meta"][()])
+        return eval(self.dfile["meta"][()])
 
     @property
     def line_labels(self) -> Sequence[str]:
@@ -1315,6 +1312,14 @@ class SyncDataset:
 
             rising, falling = split_flips(flips, is_first_frame_on)
 
+            if self.block_index_to_stim_path[block_idx] is None and os.getenv(
+                "SYNC_ALLOW_MISSING_STIM_FILES"
+            ):
+                logger.debug(
+                    f"Block {block_idx} has no stim file available to verify number of vsyncs. Skipping."
+                )
+                frame_display_time_blocks.append(fallback_or_none)
+                continue
             assert self.block_index_to_stim_path[block_idx] is not None
 
             # script_frame_intervals = h5py.File(self.block_index_to_stim_path[block_idx])['frameIntervals'][:]

{npc_sync-0.2.3 → npc_sync-0.2.5/src/npc_sync.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: npc-sync
-Version: 0.2.3
+Version: 0.2.5
 Summary: Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.
 Author-email: Ben Hardcastle <ben.hardcastle@alleninstitue.org>
 License: MIT

npc_sync-0.2.5/tests/test_core.py

@@ -0,0 +1,30 @@
+import npc_sync
+
+
+def test_import_package():
+    pass
+
+
+def test_no_stim_paths_and_meta_data() -> None:
+    """Constructing SyncDataset without stim_paths leaves stim_paths as None,
+    and meta_data is accessible and contains expected keys."""
+    s = npc_sync.SyncDataset(
+        "s3://aind-ephys-data/ecephys_662892_2023-08-21_12-43-45/behavior/20230821T124345.h5"
+    )
+    assert s.stim_paths is None
+    meta = s.meta_data
+    assert isinstance(meta, dict)
+    assert "line_labels" in meta
+
+
+def test_init_from_instance_and_meta_data() -> None:
+    """Constructing SyncDataset from an existing instance reuses it,
+    and meta_data is still accessible with expected keys."""
+    s = npc_sync.SyncDataset(
+        "s3://aind-ephys-data/ecephys_662892_2023-08-21_12-43-45/behavior/20230821T124345.h5"
+    )
+    s2 = npc_sync.SyncDataset(s)
+    assert s2.stim_paths is None
+    meta = s2.meta_data
+    assert isinstance(meta, dict)
+    assert "line_labels" in meta

npc_sync-0.2.3/tests/test_core.py

@@ -1,5 +0,0 @@
-import npc_sync
-
-
-def test_import_package():
-    pass