np_codeocean 0.3.7__tar.gz → 0.3.8__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (29) hide show
  1. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/PKG-INFO +16 -10
  2. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/README.md +14 -8
  3. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/pyproject.toml +2 -2
  4. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/PKG-INFO +16 -10
  5. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/requires.txt +1 -1
  6. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/setup.cfg +0 -0
  7. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/__init__.py +0 -0
  8. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/__init__.py +0 -0
  9. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/common.py +0 -0
  10. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/core.py +0 -0
  11. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/dynamic_routing_task_etl.py +0 -0
  12. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/model_templates/__init__.py +0 -0
  13. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/model_templates/behavior_box.py +0 -0
  14. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/model_templates/neuropixels_rig.py +0 -0
  15. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/np.py +0 -0
  16. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/rigs.py +0 -0
  17. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/storage.py +0 -0
  18. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/update.py +0 -0
  19. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/metadata/utils.py +0 -0
  20. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/np_session_utils.py +0 -0
  21. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/scripts/upload_dynamic_routing_behavior.py +0 -0
  22. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/scripts/upload_dynamic_routing_ecephys.py +0 -0
  23. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/scripts/upload_split_recordings_example.py +0 -0
  24. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean/utils.py +0 -0
  25. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/SOURCES.txt +0 -0
  26. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/dependency_links.txt +0 -0
  27. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/entry_points.txt +0 -0
  28. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/top_level.txt +0 -0
  29. {np_codeocean-0.3.7 → np_codeocean-0.3.8}/tests/test_metadata.py +0 -0
{np_codeocean-0.3.7 → np_codeocean-0.3.8}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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  Name: np_codeocean
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- Version: 0.3.7
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+ Version: 0.3.8
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  Summary: Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean
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  Author-email: Ben Hardcastle <ben.hardcastle@alleninstitute.org>, Chris Mochizuki <chrism@alleninstitute.org>, Arjun Sridhar <arjun.sridhar@alleninstitute.org>
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  License: MIT
@@ -36,7 +36,7 @@ Requires-Dist: npc-sessions>=0.0.273; extra == "dynamicrouting"
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  Requires-Dist: aind-codeocean-pipeline-monitor[full]>=0.5.0; extra == "dynamicrouting"
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  Requires-Dist: aind-metadata-mapper==0.18.2; extra == "dynamicrouting"
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  Provides-Extra: openscope
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- Requires-Dist: aind-metadata-mapper==0.18.1; extra == "openscope"
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+ Requires-Dist: aind-metadata-mapper; extra == "openscope"
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  # np_codeocean
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  Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean).
@@ -45,14 +45,9 @@ Requires running as admin on Windows in order to create remote-to-remote symlink
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  on the Isilon.
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  ## Install
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- For Dynamic Routing:
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+ Setup the development environment for working on a specific project:
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  ```shell
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- uv sync --extra dynamicrouting
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- ```
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-
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- For OpenScope:
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- ```shell
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- uv sync --extra openscope
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+ uv sync --extra <dynamicrouting|openscope>
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  ```
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  ## Add dependencies
@@ -61,11 +56,22 @@ For shared utilities:
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  uv add <package-name>
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  ```
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- For Dynamic Routing or OpenScope specific utilities:
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+ For project-specific utilities (added to optional dependency groups):
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  ```shell
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  uv add <package-name> --optional <dynamicrouting|openscope>
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  ```
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+ ## Update dependencies
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+ All:
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+ ```shell
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+ uv lock --upgrade
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+ ```
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+
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+ Single package:
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+ ```shell
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+ uv lock --upgrade-package <package-name>
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+ ```
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+
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  ## Usage
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  - `upload` CLI tool is provided, which uses the
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  [`np_session`](https://github.com/AllenInstitute/np_session) interface to find
{np_codeocean-0.3.7 → np_codeocean-0.3.8}/README.md RENAMED
@@ -5,14 +5,9 @@ Requires running as admin on Windows in order to create remote-to-remote symlink
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  on the Isilon.
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  ## Install
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- For Dynamic Routing:
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+ Setup the development environment for working on a specific project:
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  ```shell
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- uv sync --extra dynamicrouting
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- ```
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-
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- For OpenScope:
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- ```shell
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- uv sync --extra openscope
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+ uv sync --extra <dynamicrouting|openscope>
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  ```
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  ## Add dependencies
@@ -21,11 +16,22 @@ For shared utilities:
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  uv add <package-name>
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  ```
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- For Dynamic Routing or OpenScope specific utilities:
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+ For project-specific utilities (added to optional dependency groups):
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  ```shell
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  uv add <package-name> --optional <dynamicrouting|openscope>
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  ```
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+ ## Update dependencies
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+ All:
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+ ```shell
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+ uv lock --upgrade
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+ ```
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+
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+ Single package:
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+ ```shell
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+ uv lock --upgrade-package <package-name>
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+ ```
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+
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  ## Usage
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  - `upload` CLI tool is provided, which uses the
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  [`np_session`](https://github.com/AllenInstitute/np_session) interface to find
{np_codeocean-0.3.7 → np_codeocean-0.3.8}/pyproject.toml RENAMED
@@ -1,7 +1,7 @@
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  [project]
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  name = "np_codeocean"
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- version = "0.3.7"
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+ version = "0.3.8"
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  description = "Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean"
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  authors = [
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  { name = "Ben Hardcastle", email = "ben.hardcastle@alleninstitute.org" },
@@ -56,7 +56,7 @@ dynamicrouting = [
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  "aind-metadata-mapper==0.18.2",
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  ]
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  openscope = [
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- "aind-metadata-mapper==0.18.1",
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+ "aind-metadata-mapper",
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  ]
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  [tool.uv]
{np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
2
2
  Name: np_codeocean
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- Version: 0.3.7
3
+ Version: 0.3.8
4
4
  Summary: Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean
5
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  Author-email: Ben Hardcastle <ben.hardcastle@alleninstitute.org>, Chris Mochizuki <chrism@alleninstitute.org>, Arjun Sridhar <arjun.sridhar@alleninstitute.org>
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  License: MIT
@@ -36,7 +36,7 @@ Requires-Dist: npc-sessions>=0.0.273; extra == "dynamicrouting"
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  Requires-Dist: aind-codeocean-pipeline-monitor[full]>=0.5.0; extra == "dynamicrouting"
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  Requires-Dist: aind-metadata-mapper==0.18.2; extra == "dynamicrouting"
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  Provides-Extra: openscope
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- Requires-Dist: aind-metadata-mapper==0.18.1; extra == "openscope"
39
+ Requires-Dist: aind-metadata-mapper; extra == "openscope"
40
40
 
41
41
  # np_codeocean
42
42
  Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean).
@@ -45,14 +45,9 @@ Requires running as admin on Windows in order to create remote-to-remote symlink
45
45
  on the Isilon.
46
46
 
47
47
  ## Install
48
- For Dynamic Routing:
48
+ Setup the development environment for working on a specific project:
49
49
  ```shell
50
- uv sync --extra dynamicrouting
51
- ```
52
-
53
- For OpenScope:
54
- ```shell
55
- uv sync --extra openscope
50
+ uv sync --extra <dynamicrouting|openscope>
56
51
  ```
57
52
 
58
53
  ## Add dependencies
@@ -61,11 +56,22 @@ For shared utilities:
61
56
  uv add <package-name>
62
57
  ```
63
58
 
64
- For Dynamic Routing or OpenScope specific utilities:
59
+ For project-specific utilities (added to optional dependency groups):
65
60
  ```shell
66
61
  uv add <package-name> --optional <dynamicrouting|openscope>
67
62
  ```
68
63
 
64
+ ## Update dependencies
65
+ All:
66
+ ```shell
67
+ uv lock --upgrade
68
+ ```
69
+
70
+ Single package:
71
+ ```shell
72
+ uv lock --upgrade-package <package-name>
73
+ ```
74
+
69
75
  ## Usage
70
76
  - `upload` CLI tool is provided, which uses the
71
77
  [`np_session`](https://github.com/AllenInstitute/np_session) interface to find
{np_codeocean-0.3.7 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/requires.txt RENAMED
@@ -22,4 +22,4 @@ aind-codeocean-pipeline-monitor[full]>=0.5.0
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  aind-metadata-mapper==0.18.2
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  [openscope]
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- aind-metadata-mapper==0.18.1
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+ aind-metadata-mapper
{np_codeocean-0.3.7 → np_codeocean-0.3.8}/setup.cfg RENAMED
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