np_codeocean 0.3.6__tar.gz → 0.3.8__tar.gz

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Files changed (29) hide show
  1. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/PKG-INFO +33 -2
  2. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/README.md +29 -0
  3. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/pyproject.toml +16 -6
  4. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/PKG-INFO +33 -2
  5. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/requires.txt +4 -1
  6. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/setup.cfg +0 -0
  7. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/__init__.py +0 -0
  8. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/__init__.py +0 -0
  9. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/common.py +0 -0
  10. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/core.py +0 -0
  11. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/dynamic_routing_task_etl.py +0 -0
  12. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/model_templates/__init__.py +0 -0
  13. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/model_templates/behavior_box.py +0 -0
  14. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/model_templates/neuropixels_rig.py +0 -0
  15. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/np.py +0 -0
  16. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/rigs.py +0 -0
  17. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/storage.py +0 -0
  18. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/update.py +0 -0
  19. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/metadata/utils.py +0 -0
  20. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/np_session_utils.py +0 -0
  21. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/scripts/upload_dynamic_routing_behavior.py +0 -0
  22. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/scripts/upload_dynamic_routing_ecephys.py +0 -0
  23. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/scripts/upload_split_recordings_example.py +0 -0
  24. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean/utils.py +0 -0
  25. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/SOURCES.txt +0 -0
  26. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/dependency_links.txt +0 -0
  27. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/entry_points.txt +0 -0
  28. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/src/np_codeocean.egg-info/top_level.txt +0 -0
  29. {np_codeocean-0.3.6 → np_codeocean-0.3.8}/tests/test_metadata.py +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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  Name: np_codeocean
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- Version: 0.3.6
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+ Version: 0.3.8
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  Summary: Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean
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  Author-email: Ben Hardcastle <ben.hardcastle@alleninstitute.org>, Chris Mochizuki <chrism@alleninstitute.org>, Arjun Sridhar <arjun.sridhar@alleninstitute.org>
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  License: MIT
@@ -32,9 +32,11 @@ Provides-Extra: dev
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  Requires-Dist: bump>=1.3.2; extra == "dev"
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  Provides-Extra: dynamicrouting
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  Requires-Dist: npc-lims>=0.1.154; extra == "dynamicrouting"
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- Requires-Dist: npc-sessions>=0.0.253; extra == "dynamicrouting"
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+ Requires-Dist: npc-sessions>=0.0.273; extra == "dynamicrouting"
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  Requires-Dist: aind-codeocean-pipeline-monitor[full]>=0.5.0; extra == "dynamicrouting"
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  Requires-Dist: aind-metadata-mapper==0.18.2; extra == "dynamicrouting"
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+ Provides-Extra: openscope
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+ Requires-Dist: aind-metadata-mapper; extra == "openscope"
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  # np_codeocean
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  Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean).
@@ -42,6 +44,35 @@ Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean).
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  Requires running as admin on Windows in order to create remote-to-remote symlinks
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  on the Isilon.
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+ ## Install
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+ Setup the development environment for working on a specific project:
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+ ```shell
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+ uv sync --extra <dynamicrouting|openscope>
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+ ```
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+
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+ ## Add dependencies
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+ For shared utilities:
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+ ```shell
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+ uv add <package-name>
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+ ```
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+
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+ For project-specific utilities (added to optional dependency groups):
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+ ```shell
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+ uv add <package-name> --optional <dynamicrouting|openscope>
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+ ```
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+
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+ ## Update dependencies
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+ All:
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+ ```shell
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+ uv lock --upgrade
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+ ```
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+
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+ Single package:
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+ ```shell
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+ uv lock --upgrade-package <package-name>
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+ ```
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+
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+ ## Usage
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  - `upload` CLI tool is provided, which uses the
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  [`np_session`](https://github.com/AllenInstitute/np_session) interface to find
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  and upload
@@ -4,6 +4,35 @@ Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean).
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  Requires running as admin on Windows in order to create remote-to-remote symlinks
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  on the Isilon.
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6
 
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+ ## Install
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+ Setup the development environment for working on a specific project:
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+ ```shell
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+ uv sync --extra <dynamicrouting|openscope>
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+ ```
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+
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+ ## Add dependencies
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+ For shared utilities:
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+ ```shell
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+ uv add <package-name>
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+ ```
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+
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+ For project-specific utilities (added to optional dependency groups):
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+ ```shell
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+ uv add <package-name> --optional <dynamicrouting|openscope>
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+ ```
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+
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+ ## Update dependencies
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+ All:
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+ ```shell
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+ uv lock --upgrade
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+ ```
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+
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+ Single package:
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+ ```shell
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+ uv lock --upgrade-package <package-name>
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+ ```
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+
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+ ## Usage
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  - `upload` CLI tool is provided, which uses the
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  [`np_session`](https://github.com/AllenInstitute/np_session) interface to find
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  and upload
@@ -1,7 +1,7 @@
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  [project]
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  name = "np_codeocean"
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- version = "0.3.6"
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+ version = "0.3.8"
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  description = "Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean"
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  authors = [
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  { name = "Ben Hardcastle", email = "ben.hardcastle@alleninstitute.org" },
@@ -51,10 +51,24 @@ upload_sessions = "np_codeocean.scripts.upload_sessions:main"
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  dev = ["bump>=1.3.2"]
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  dynamicrouting = [
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  "npc-lims>=0.1.154",
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- "npc-sessions>=0.0.253",
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+ "npc-sessions>=0.0.273",
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  "aind-codeocean-pipeline-monitor[full]>=0.5.0",
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  "aind-metadata-mapper==0.18.2",
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  ]
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+ openscope = [
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+ "aind-metadata-mapper",
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+ ]
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+
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+ [tool.uv]
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+ conflicts = [
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+ [
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+ { extra = "dynamicrouting" },
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+ { extra = "openscope" },
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+ ],
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+ ]
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+ package = true
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+ default-groups = "all"
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+
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  [build-system]
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  requires = ["setuptools>=61", "wheel"]
@@ -66,10 +80,6 @@ linting = ["black>=25.1.0", "isort>=6.0.1", "ruff>=0.11.2"]
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  testing = ["mypy>=1.4.1"]
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  bump = ["bump-my-version>=1.1.1", "git-changelog>=2.5.3"]
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- [tool.uv]
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- package = true
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- default-groups = "all"
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-
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  [tool.poe.tasks]
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  mypy = "mypy src --install-types --non-interactive"
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
2
2
  Name: np_codeocean
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- Version: 0.3.6
3
+ Version: 0.3.8
4
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  Summary: Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean
5
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  Author-email: Ben Hardcastle <ben.hardcastle@alleninstitute.org>, Chris Mochizuki <chrism@alleninstitute.org>, Arjun Sridhar <arjun.sridhar@alleninstitute.org>
6
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  License: MIT
@@ -32,9 +32,11 @@ Provides-Extra: dev
32
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  Requires-Dist: bump>=1.3.2; extra == "dev"
33
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  Provides-Extra: dynamicrouting
34
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  Requires-Dist: npc-lims>=0.1.154; extra == "dynamicrouting"
35
- Requires-Dist: npc-sessions>=0.0.253; extra == "dynamicrouting"
35
+ Requires-Dist: npc-sessions>=0.0.273; extra == "dynamicrouting"
36
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  Requires-Dist: aind-codeocean-pipeline-monitor[full]>=0.5.0; extra == "dynamicrouting"
37
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  Requires-Dist: aind-metadata-mapper==0.18.2; extra == "dynamicrouting"
38
+ Provides-Extra: openscope
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+ Requires-Dist: aind-metadata-mapper; extra == "openscope"
38
40
 
39
41
  # np_codeocean
40
42
  Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean).
@@ -42,6 +44,35 @@ Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean).
42
44
  Requires running as admin on Windows in order to create remote-to-remote symlinks
43
45
  on the Isilon.
44
46
 
47
+ ## Install
48
+ Setup the development environment for working on a specific project:
49
+ ```shell
50
+ uv sync --extra <dynamicrouting|openscope>
51
+ ```
52
+
53
+ ## Add dependencies
54
+ For shared utilities:
55
+ ```shell
56
+ uv add <package-name>
57
+ ```
58
+
59
+ For project-specific utilities (added to optional dependency groups):
60
+ ```shell
61
+ uv add <package-name> --optional <dynamicrouting|openscope>
62
+ ```
63
+
64
+ ## Update dependencies
65
+ All:
66
+ ```shell
67
+ uv lock --upgrade
68
+ ```
69
+
70
+ Single package:
71
+ ```shell
72
+ uv lock --upgrade-package <package-name>
73
+ ```
74
+
75
+ ## Usage
45
76
  - `upload` CLI tool is provided, which uses the
46
77
  [`np_session`](https://github.com/AllenInstitute/np_session) interface to find
47
78
  and upload
@@ -17,6 +17,9 @@ bump>=1.3.2
17
17
 
18
18
  [dynamicrouting]
19
19
  npc-lims>=0.1.154
20
- npc-sessions>=0.0.253
20
+ npc-sessions>=0.0.273
21
21
  aind-codeocean-pipeline-monitor[full]>=0.5.0
22
22
  aind-metadata-mapper==0.18.2
23
+
24
+ [openscope]
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+ aind-metadata-mapper
File without changes