np-services 0.1.43__tar.gz → 0.1.45__tar.gz

{np_services-0.1.43 → np_services-0.1.45}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: np-services
-Version: 0.1.43
+Version: 0.1.45
 Summary: Tools for interfacing with devices and services used in Mindscope Neuropixels experiments at the Allen Institute.
 Author: bjhardcastle
 Author-email: ben.hardcastle@alleninstitute.org
@@ -19,6 +19,7 @@ Requires-Dist: pandas (>=1.5.3,<2.0.0)
 Requires-Dist: pydantic (>=1.10,<2.0)
 Requires-Dist: pyzmq
 Requires-Dist: requests (>=2,<3)
+Requires-Dist: tables (>=3.8.0,<4.0.0)
 Description-Content-Type: text/markdown
 
 # service usage

{np_services-0.1.43 → np_services-0.1.45}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "np-services"
-version = "0.1.43"
+version = "0.1.45"
 description = "Tools for interfacing with devices and services used in Mindscope Neuropixels experiments at the Allen Institute."
 authors = ["bjhardcastle <ben.hardcastle@alleninstitute.org>"]
 readme = "README.md"
@@ -22,6 +22,7 @@ pydantic = "^1.10"
 pandas = "^1.5.3"
 h5py = "^3.8.0"
 np_config = ">=0.4.17"
+tables = "^3.8.0"
 
 [tool.poetry.group.dev.dependencies]
 pip-tools = "*"

{np_services-0.1.43 → np_services-0.1.45}/setup.py

@@ -19,11 +19,12 @@ install_requires = \
  'pandas>=1.5.3,<2.0.0',
  'pydantic>=1.10,<2.0',
  'pyzmq',
- 'requests>=2,<3']
+ 'requests>=2,<3',
+ 'tables>=3.8.0,<4.0.0']
 
 setup_kwargs = {
     'name': 'np-services',
-    'version': '0.1.43',
+    'version': '0.1.45',
     'description': 'Tools for interfacing with devices and services used in Mindscope Neuropixels experiments at the Allen Institute.',
     'long_description': '# service usage\n![Services](./services.drawio.svg)',
     'author': 'bjhardcastle',

{np_services-0.1.43 → np_services-0.1.45}/src/np_services/open_ephys.py

@@ -131,6 +131,7 @@ def initialize() -> None:
     data_files = []
     global initialized
     initialized = time.time()
+    global folder
     set_folder(folder)
 
 
@@ -272,6 +273,7 @@ def unlock_previous_recording():
     time.sleep(0.5)
     stop()
     time.sleep(0.5)
+    global folder
     set_folder(folder)
 
 

{np_services-0.1.43 → np_services-0.1.45}/src/np_services/proxies.py

@@ -821,8 +821,8 @@ class Cam3d(CamstimSyncShared):
         logger.debug(f"{cls.__name__} | Finalizing")
         counter = 0
         while (
-            cls.is_started()
-            or not (latest := cls.get_latest_data('*'))
+            not (latest := cls.get_latest_data('*'))
+            or cls.is_started()
         ):
             time.sleep(1)
             counter += 1

np_services-0.1.45/src/np_services/sync.py

@@ -0,0 +1,19 @@
+import pathlib
+
+import h5py
+import pandas as pd
+import pydantic
+import tables
+
+f = pathlib.Path('//allen/programs/mindscope/workgroups/np-exp/habituation/1253722691_661730_20230313/1253722691_661730_20230313.sync')
+
+h = h5py.File(f, 'r')
+t = tables.open_file(f, 'r')
+pd.read_hdf(f.as_posix(), 'meta')
+
+
+
+
+class Sync(pydantic.BaseModel):
+    pass
+