nmma 0.2.1__tar.gz → 0.2.3__tar.gz

{nmma-0.2.1 → nmma-0.2.3}/.github/workflows/build-deploy-container.yml

@@ -3,6 +3,7 @@ name: CI to Docker Hub
 on:
   push:
     branches: [ main ]
+  workflow_dispatch:
 env:
   REGISTRY_IMAGE: nmma/nmma_api
 
@@ -14,7 +15,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        platform: ['linux/amd64', 'linux/arm64/v8']
+        platform: ['linux/amd64']
 
     steps:
 
@@ -57,7 +58,7 @@ jobs:
           touch "/tmp/digests/${digest#sha256:}"
 
       - name: Upload digest
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: digests
           path: /tmp/digests/*
@@ -71,7 +72,7 @@ jobs:
       - build
     steps:
       - name: Download digests
-        uses: actions/download-artifact@v3
+        uses: actions/download-artifact@v4
         with:
           name: digests
           path: /tmp/digests

nmma-0.2.3/.github/workflows/continous_integration.yml

@@ -0,0 +1,115 @@
+name: Unit Test nmma [ubuntu]
+
+on:
+  push:
+    branches: [main]
+    paths-ignore:
+      - "doc/**"
+  pull_request:
+    branches: [main]
+    paths-ignore:
+      - "doc/**"
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: "ubuntu-latest"
+    defaults:
+      run:
+        shell: bash -el {0}
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+
+    steps:
+      - name: Checkout branch being tested
+        uses: actions/checkout@v4
+
+      - name: Set up Python with Conda ${{ matrix.python-version }}
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+          miniforge-version: latest
+          use-mamba: true
+          mamba-version: "*"
+          activate-environment: nmma_env
+          channels: defaults
+
+      - name: Restore SVD models from cache
+        uses: actions/cache/restore@v4
+        with:
+          path: svdmodels
+          key: svdmodels-${{ hashFiles('**/LICENSE') }}
+          restore-keys: svdmodels-
+
+      - name: Get pip cache dir
+        id: pip-cache
+        run: |
+          python -m pip install --upgrade pip setuptools wheel
+          echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
+
+      - name: Restore pip cache
+        uses: actions/cache/restore@v4
+        with:
+          path: ${{ steps.pip-cache.outputs.dir }}
+          key: ${{ runner.os }}-pip-2-${{ hashFiles('**/pyproject.toml', '**/requirements.txt') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-2-
+
+      - name: Install dependencies (Ubuntu)
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y libblas3 libblas-dev python3-mpi4py \
+          build-essential openmpi-bin libopenmpi-dev liblapack3 \
+          liblapack-dev libatlas-base-dev gfortran
+
+      - name: Install Python dependencies
+        run: |
+          python -m pip install --upgrade git+https://github.com/bitranox/wrapt_timeout_decorator.git
+          python -m pip install pytest pytest-cov flake8 pytest-aiohttp sqlparse freezegun PyJWT joblib "coveralls==3.3.1"
+          python -m pip install -r  ml_requirements.txt -r grb_requirements.txt -r tf_requirements.txt -r sklearn_requirements.txt
+          python -m pip install .
+          git clone https://github.com/JohannesBuchner/MultiNest && cd MultiNest/build && rm -rf * && cmake -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. && make && cd ../..
+
+      - name: Export Libraries
+        run: |
+          echo "LD_LIBRARY_PATH=$GITHUB_WORKSPACE/MultiNest/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
+          echo "DYLD_LIBRARY_PATH=$GITHUB_WORKSPACE/MultiNest/lib:$DYLD_LIBRARY_PATH" >> $GITHUB_ENV
+
+      - name: Lint with flake8
+        run: |
+          # stop the build if there are Python syntax errors or undefined names
+          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude docs
+          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --exclude docs,versioneer.py,nmma/_version.py,nmma/tests,nmma/*/__init__.py
+
+      - name: Test with pytest
+        run: |
+          echo "LD_LIBRARY_PATH: $LD_LIBRARY_PATH"
+          echo "DYLD_LIBRARY_PATH: $DYLD_LIBRARY_PATH"
+          python -m coverage run --source nmma -m pytest nmma/tests/*.py
+        env:
+          LD_LIBRARY_PATH: ${{ env.LD_LIBRARY_PATH }}
+          DYLD_LIBRARY_PATH: ${{ env.DYLD_LIBRARY_PATH }}
+
+      - name: Run Coveralls
+        if: ${{ success() }}
+        run: |
+          coveralls --service=github
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Save SVD models cache
+        uses: actions/cache/save@v4
+        if: always()
+        with:
+          path: svdmodels
+          key: svdmodels-${{ hashFiles('**/LICENSE') }}
+
+      - name: Save pip cache
+        uses: actions/cache/save@v4
+        if: always()
+        with:
+          path: ${{ steps.pip-cache.outputs.dir }}
+          key: ${{ runner.os }}-pip-2-${{ hashFiles('**/pyproject.toml', '**/requirements.txt') }}

nmma-0.2.1/.github/workflows/continous_integration.yml → nmma-0.2.3/.github/workflows/continous_integration_macos.yml

@@ -1,4 +1,4 @@
-name: Unit Test nmma
+name: Unit Test nmma [MacOS]
 
 on:
   push:
@@ -13,15 +13,14 @@ on:
 
 jobs:
   build:
-    runs-on: ${{ matrix.os }}
+    runs-on: "macos-latest"
     defaults:
       run:
         shell: bash -el {0}
     strategy:
       fail-fast: false
       matrix:
-        os: ["ubuntu-latest", "macos-latest"]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
 
     steps:
       - name: Checkout branch being tested
@@ -31,43 +30,37 @@ jobs:
         uses: conda-incubator/setup-miniconda@v3
         with:
           python-version: ${{ matrix.python-version }}
-          architecture: ${{ matrix.os == 'macos-latest' && 'arm64' || 'x86_64' }}
+          architecture: "arm64"
           miniforge-version: latest
           use-mamba: true
           mamba-version: "*"
           activate-environment: nmma_env
+          channels: defaults
 
       - name: Restore SVD models from cache
-        uses: actions/cache@v4
+        uses: actions/cache/restore@v4
         with:
           path: svdmodels
           key: svdmodels-${{ hashFiles('**/LICENSE') }}
           restore-keys: svdmodels-
-          save-always: true
 
       - name: Get pip cache dir
         id: pip-cache
         run: |
           python -m pip install --upgrade pip setuptools wheel
-          echo "::set-output name=dir::$(pip cache dir)"
-
-      - name: pip cache
-        uses: actions/cache@v4
+          echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
+      - name: Restore pip cache
+        uses: actions/cache/restore@v4
         with:
           path: ${{ steps.pip-cache.outputs.dir }}
           key: ${{ runner.os }}-pip-2-${{ hashFiles('**/pyproject.toml', '**/requirements.txt') }}
           restore-keys: |
             ${{ runner.os }}-pip-2-
-          save-always: true
-
       - name: Update Homebrew
-        if: matrix.os == 'macos-latest'
         run: |
-          brew update --preinstall
-
-      - name: Configure Homebrew cache
-        if: matrix.os == 'macos-latest'
-        uses: actions/cache@v4
+          brew update --auto-update
+      - name: Restore Homebrew cache
+        uses: actions/cache/restore@v4
         with:
           path: |
             ~/Library/Caches/Homebrew/openmpi--*
@@ -80,74 +73,78 @@ jobs:
             ~/Library/Caches/Homebrew/downloads/*--openblas-*
             ~/Library/Caches/Homebrew/lapack--*
             ~/Library/Caches/Homebrew/downloads/*--lapack-*
-            ~/Library/Caches/Homebrew/basictex--*
-            ~/Library/Caches/Homebrew/downloads/*--basictex-*
             ~/Library/Caches/Homebrew/cmake--*
             ~/Library/Caches/Homebrew/downloads/*--cmake-*
-
           key: brew-${{ hashFiles('**/pyproject.toml') }}
           restore-keys: brew-
-          save-always: true
 
       - name: Install Homebrew dependencies
-        if: matrix.os == 'macos-latest'
         run: |
-          env HOMEBREW_NO_AUTO_UPDATE=1 brew install openmpi hdf5 gcc openblas lapack basictex cmake
+          env HOMEBREW_NO_AUTO_UPDATE=1 brew install openmpi hdf5 gcc openblas lapack cmake
           eval "$(/usr/libexec/path_helper)"
-          sudo tlmgr update --self
-          sudo tlmgr install collection-latex
-          sudo tlmgr install collection-fontsrecommended
-          sudo tlmgr install dvipng
-          sudo tlmgr install cm-super
-          sudo tlmgr install type1cm
-      - name: Install Linux Dependencies
-        if: matrix.os == 'ubuntu-latest'
-        uses: awalsh128/cache-apt-pkgs-action@latest
-        with:
-          packages: openmpi-bin libopenmpi-dev gfortran build-essential libblas3 libblas-dev liblapack3 liblapack-dev libatlas-base-dev texlive texlive-latex-extra texlive-fonts-recommended dvipng cm-super
-          execute_install_scripts: true
-
       - name: Install dependencies (macOS)
-        if: matrix.os == 'macos-latest'
         run: |
           conda install -c conda-forge pyfftw c-compiler ligo-segments python-ligo-lw
-          echo "FC=$(which gfortran-11)" >> $GITHUB_ENV
+          echo "FC=$(which gfortran-14)" >> $GITHUB_ENV
           echo "CC=$(which gcc)" >> $GITHUB_ENV
           echo "CXX=$(which g++)" >> $GITHUB_ENV
-
-      - name: Install dependencies (Ubuntu)
-        if: matrix.os == 'ubuntu-latest'
-        run: |
-          sudo apt-get update
-          sudo apt-get install -y texlive texlive-latex-extra texlive-fonts-recommended dvipng cm-super
       - name: Install Python dependencies
         run: |
           python -m pip install --upgrade git+https://github.com/bitranox/wrapt_timeout_decorator.git
-          python -m pip install pytest pytest-cov flake8 pytest-aiohttp sqlparse freezegun PyJWT joblib coveralls
+          python -m pip install pytest pytest-cov flake8 pytest-aiohttp sqlparse freezegun PyJWT joblib "coveralls==3.3.1"
           python -m pip install -r  ml_requirements.txt -r grb_requirements.txt -r tf_requirements.txt -r sklearn_requirements.txt
           python -m pip install .
-          git clone https://github.com/JohannesBuchner/MultiNest && cd MultiNest/build && rm -rf * && cmake .. && make && cd ../..
+          git clone https://github.com/JohannesBuchner/MultiNest && cd MultiNest/build && rm -rf * && cmake -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. && make && cd ../..
           pwd
-
       - name: Export Libraries
         run: |
           echo "LD_LIBRARY_PATH=$HOME/work/nmma/nmma/MultiNest/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
           echo "DYLD_LIBRARY_PATH=$HOME/work/nmma/nmma/MultiNest/lib:$DYLD_LIBRARY_PATH" >> $GITHUB_ENV
-
       - name: Lint with flake8
         run: |
           # stop the build if there are Python syntax errors or undefined names
           flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude docs
           # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
           flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --exclude docs,versioneer.py,nmma/_version.py,nmma/tests,nmma/*/__init__.py
-
       - name: Test with pytest
         run: |
           python -m coverage run --source nmma -m pytest nmma/tests/*.py
-
       - name: Run Coveralls
         if: ${{ success() }}
         run: |
           coveralls --service=github
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Save SVD models cache
+        uses: actions/cache/save@v4
+        if: always()
+        with:
+          path: svdmodels
+          key: svdmodels-${{ hashFiles('**/LICENSE') }}
+
+      - name: Save pip cache
+        uses: actions/cache/save@v4
+        if: always()
+        with:
+          path: ${{ steps.pip-cache.outputs.dir }}
+          key: ${{ runner.os }}-pip-2-${{ hashFiles('**/pyproject.toml', '**/requirements.txt') }}
+
+      - name: Save Homebrew cache
+        if: always()
+        uses: actions/cache/save@v4
+        with:
+          path: |
+            ~/Library/Caches/Homebrew/openmpi--*
+            ~/Library/Caches/Homebrew/downloads/*--openmpi-*
+            ~/Library/Caches/Homebrew/hdf5--*
+            ~/Library/Caches/Homebrew/downloads/*--hdf5-*
+            ~/Library/Caches/Homebrew/gcc--*
+            ~/Library/Caches/Homebrew/downloads/*--gcc-*
+            ~/Library/Caches/Homebrew/openblas--*
+            ~/Library/Caches/Homebrew/downloads/*--openblas-*
+            ~/Library/Caches/Homebrew/lapack--*
+            ~/Library/Caches/Homebrew/downloads/*--lapack-*
+            ~/Library/Caches/Homebrew/cmake--*
+            ~/Library/Caches/Homebrew/downloads/*--cmake-*
+          key: brew-${{ hashFiles('**/pyproject.toml') }}

{nmma-0.2.1 → nmma-0.2.3}/.github/workflows/dependency-installation.yml

@@ -18,7 +18,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest", "macos-latest"]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
 
     steps:
       - name: Checkout branch being tested
@@ -39,16 +39,20 @@ jobs:
         run: |
           sudo apt-get update
           sudo apt-get install -y openmpi-bin libopenmpi-dev
+          pip install --upgrade pip setuptools wheel
+
 
       - name: Install Homebrew packages
         if: matrix.os == 'macos-latest'
         run: |
           brew install openmpi hdf5
           conda install ligo-segments python-ligo-lw
+          pip install --upgrade pip setuptools wheel
+
 
       - name: Install NMMA (base)
         run: |
-          python -m pip install 'nmma @ git+https://github.com/sahiljhawar/nmma.git@dependencies'
+          python -m pip install nmma
 
       - name: Verify base NMMA installation
         run: |
@@ -56,30 +60,30 @@ jobs:
 
       - name: Install and verify NMMA [grb]
         run: |
-          python -m pip install 'nmma[grb] @ git+https://github.com/sahiljhawar/nmma.git@dependencies'
+          python -m pip install 'nmma[grb]'
           python -c "import nmma, afterglowpy; print(f'Successfully imported {nmma.__name__}, {afterglowpy.__name__}')"
 
       - name: Install and verify NMMA [production]
         run: |
-          python -m pip install 'nmma[production] @ git+https://github.com/sahiljhawar/nmma.git@dependencies'
+          python -m pip install 'nmma[production]'
           python -c "import nmma, parallel_bilby, nestcheck, mpi4py; print(f'Successfully imported {nmma.__name__}, {parallel_bilby.__name__}, {nestcheck.__name__}, {mpi4py.__name__}')"
 
       - name: Install and verify NMMA [neuralnet]
         run: |
-          python -m pip install 'nmma[neuralnet] @ git+https://github.com/sahiljhawar/nmma.git@dependencies'
+          python -m pip install 'nmma[neuralnet]'
           python -c "import nmma, torch, nflows, torchvision; print(f'Successfully imported {nmma.__name__}, {torch.__name__}, {nflows.__name__}, {torchvision.__name__}')"
 
       - name: Install and verify NMMA [tf]
         run: |
-          python -m pip install 'nmma[tf] @ git+https://github.com/sahiljhawar/nmma.git@dependencies'
+          python -m pip install 'nmma[tf]'
           python -c "import nmma, tensorflow; print(f'Successfully imported {nmma.__name__}, {tensorflow.__name__}')"
 
       - name: Install and verify NMMA [sklearn]
         run: |
-          python -m pip install 'nmma[sklearn] @ git+https://github.com/sahiljhawar/nmma.git@dependencies'
+          python -m pip install 'nmma[sklearn]'
           python -c "import nmma, sklearn; print(f'Successfully imported {nmma.__name__}, {sklearn.__name__}')"
 
       - name: Install and verify NMMA [sampler]
         run: |
-          python -m pip install 'nmma[sampler] @ git+https://github.com/sahiljhawar/nmma.git@dependencies'
+          python -m pip install 'nmma[sampler]'
           python -c "import nmma, ultranest; print(f'Successfully imported {nmma.__name__}, {ultranest.__name__}')"

nmma-0.2.3/.github/workflows/deploy-github-pages.yml

@@ -0,0 +1,56 @@
+name: Website Deploy
+
+on:
+  push:
+    branches: [main]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [3.12]
+
+    steps:
+      - uses: actions/checkout@v3
+      - uses: mpi4py/setup-mpi@v1
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Get pip cache dir
+        id: pip-cache
+        run: |
+          python -m pip install --upgrade pip setuptools wheel
+          echo "::set-output name=dir::$(pip cache dir)"
+      - name: pip cache
+        uses: actions/cache@v3
+        with:
+          path: ${{ steps.pip-cache.outputs.dir }}
+          key: ${{ runner.os }}-pip-2-${{ hashFiles('**/pyproject.toml', '**/requirements.txt') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-2-
+      - name: Install dependencies
+        run: |
+          #sudo apt-get install gfortran swig libhdf5-serial-dev libmpich-dev
+          python -m pip install --upgrade git+https://github.com/bitranox/wrapt_timeout_decorator.git
+          python -m pip install coverage cpp-coveralls flake8 pytest
+          python -m pip install .[doc]
+
+      - name: Make dependencies
+        env:
+          SPHINX_GITHUB_CHANGELOG_TOKEN: ${{ secrets.SPHINX_GITHUB_CHANGELOG_TOKEN }}
+        run: |
+          cd doc && make html; cd ../
+          touch doc/_build/html/.nojekyll
+
+      - name: Deploy to GitHub Pages
+        if: success() && github.repository_owner == 'nuclear-multimessenger-astronomy'
+        uses: crazy-max/ghaction-github-pages@v2
+        with:
+          target_branch: gh-pages
+          build_dir: doc/_build/html/
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          SPHINX_GITHUB_CHANGELOG_TOKEN: ${{ secrets.SPHINX_GITHUB_CHANGELOG_TOKEN }}

nmma-0.2.3/.github/workflows/publish-to-pypi.yml

@@ -0,0 +1,36 @@
+name: Publish Python 🐍 distributions 📦 to PyPI and TestPyPI
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  build-and-publish-to-pypi:
+    name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@main
+      - name: Set up Python 3.12
+        uses: actions/setup-python@v3
+        with:
+          python-version: "3.12"
+      - name: Install pypa/build
+        run: >-
+          python -m
+          pip install
+          build
+          --user
+      - name: Build a binary wheel and a source tarball
+        run: >-
+          python -m
+          build
+          --sdist
+          --wheel
+          --outdir dist/
+          .
+      - name: Publish distribution 📦 to PyPI
+        if: startsWith(github.ref, 'refs/tags')
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_API_TOKEN }}

{nmma-0.2.1 → nmma-0.2.3}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: nmma
-Version: 0.2.1
+Version: 0.2.3
 Summary: A nuclear physics multi-messenger Bayesian inference library
 Author-email: "Peter Tsun Ho Pang, Michael Coughlin, Tim Dietrich, Ingo Tews" <nuclear_multimessenger_astronomy@googlegroups.com>
 License: GPLv3
@@ -9,10 +9,10 @@ Project-URL: Documentation, https://nuclear-multimessenger-astronomy.github.io/n
 Project-URL: Download, https://pypi.org/project/nmma/#files
 Project-URL: Tracker, https://github.com/nuclear-multimessenger-astronomy/nmma/issues
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Classifier: Intended Audience :: Science/Research
 Classifier: Intended Audience :: End Users/Desktop
 Classifier: Intended Audience :: Developers
@@ -24,18 +24,18 @@ Classifier: Operating System :: POSIX
 Classifier: Operating System :: Unix
 Classifier: Operating System :: MacOS
 Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
-Requires-Python: <3.13,>=3.9
+Requires-Python: <3.14,>=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: future
-Requires-Dist: bilby>=2.1.1
-Requires-Dist: bilby_pipe>=1.1.0
+Requires-Dist: bilby>=2.4.1
+Requires-Dist: bilby_pipe==1.5.0
 Requires-Dist: colorcet
-Requires-Dist: numpy>=1.9
-Requires-Dist: matplotlib<3.8,>=2.0
+Requires-Dist: numpy>2.0
+Requires-Dist: matplotlib>3.8
 Requires-Dist: scipy>=1.10
-Requires-Dist: pandas<2.0,>=1.3.4
-Requires-Dist: astropy>=4.3.1
+Requires-Dist: pandas>2.0
+Requires-Dist: astropy>=5.3.4
 Requires-Dist: pymultinest
 Requires-Dist: sncosmo
 Requires-Dist: dust_extinction
@@ -76,6 +76,7 @@ Provides-Extra: tf
 Requires-Dist: tensorflow; extra == "tf"
 Provides-Extra: sampler
 Requires-Dist: ultranest; extra == "sampler"
+Dynamic: license-file
 
 <p align="center">
     <picture>
@@ -133,6 +134,36 @@ When utilizing this code for a publication, kindly make a reference to the packa
       url={https://doi.org/10.1038/s41467-023-43932-6}
 }
 ```
+If you are using the systematics error, please also cite the paper [Data-driven approach for modeling the temporal and spectral evolution of kilonova systematic uncertainties](https://arxiv.org/abs/2410.21978). The BibTeX entry for the paper is:
+```bibtex
+@article{Jhawar:2024ezm,
+    author = "Jhawar, Sahil and Wouters, Thibeau and Pang, Peter T. H. and Bulla, Mattia and Coughlin, Michael W. and Dietrich, Tim",
+    title = "{Data-driven approach for modeling the temporal and spectral evolution of kilonova systematic uncertainties}",
+    eprint = "2410.21978",
+    archivePrefix = "arXiv",
+    primaryClass = "astro-ph.HE",
+    doi = "10.1103/PhysRevD.111.043046",
+    journal = "Phys. Rev. D",
+    volume = "111",
+    number = "4",
+    pages = "043046",
+    year = "2025"
+}
+```
+
+If you are using likelihood free inference, please also cite the paper [Rapid parameter estimation for kilonovae using likelihood-free inference](https://www.arxiv.org/abs/2408.06947). The BibTeX entry for the paper is:
+```bibtex
+@article{Desai:2024hlp,
+    author = "Desai, Malina and Chatterjee, Deep and Jhawar, Sahil and Harris, Philip and Katsavounidis, Erik and Coughlin, Michael",
+    title = "{Kilonova Light Curve Parameter Estimation Using Likelihood-Free Inference}",
+    eprint = "2408.06947",
+    archivePrefix = "arXiv",
+    primaryClass = "astro-ph.IM",
+    doi = "10.1093/mnras/staf1045",
+    month = "8",
+    year = "2024"
+}
+```
 
 ### Acknowledgments
 If you benefited from participating in our community, we ask that you please acknowledge the Nuclear Multi-Messenger Astronomy collaboration, and particular individuals who helped you, in any publications.

{nmma-0.2.1 → nmma-0.2.3}/README.md

@@ -54,6 +54,36 @@ When utilizing this code for a publication, kindly make a reference to the packa
       url={https://doi.org/10.1038/s41467-023-43932-6}
 }
 ```
+If you are using the systematics error, please also cite the paper [Data-driven approach for modeling the temporal and spectral evolution of kilonova systematic uncertainties](https://arxiv.org/abs/2410.21978). The BibTeX entry for the paper is:
+```bibtex
+@article{Jhawar:2024ezm,
+    author = "Jhawar, Sahil and Wouters, Thibeau and Pang, Peter T. H. and Bulla, Mattia and Coughlin, Michael W. and Dietrich, Tim",
+    title = "{Data-driven approach for modeling the temporal and spectral evolution of kilonova systematic uncertainties}",
+    eprint = "2410.21978",
+    archivePrefix = "arXiv",
+    primaryClass = "astro-ph.HE",
+    doi = "10.1103/PhysRevD.111.043046",
+    journal = "Phys. Rev. D",
+    volume = "111",
+    number = "4",
+    pages = "043046",
+    year = "2025"
+}
+```
+
+If you are using likelihood free inference, please also cite the paper [Rapid parameter estimation for kilonovae using likelihood-free inference](https://www.arxiv.org/abs/2408.06947). The BibTeX entry for the paper is:
+```bibtex
+@article{Desai:2024hlp,
+    author = "Desai, Malina and Chatterjee, Deep and Jhawar, Sahil and Harris, Philip and Katsavounidis, Erik and Coughlin, Michael",
+    title = "{Kilonova Light Curve Parameter Estimation Using Likelihood-Free Inference}",
+    eprint = "2408.06947",
+    archivePrefix = "arXiv",
+    primaryClass = "astro-ph.IM",
+    doi = "10.1093/mnras/staf1045",
+    month = "8",
+    year = "2024"
+}
+```
 
 ### Acknowledgments
 If you benefited from participating in our community, we ask that you please acknowledge the Nuclear Multi-Messenger Astronomy collaboration, and particular individuals who helped you, in any publications.

{nmma-0.2.1 → nmma-0.2.3}/api/Dockerfile

@@ -8,8 +8,8 @@ COPY requirements.txt .
 RUN mamba env create -f environment.yml
 RUN conda clean -afy
 RUN find -name '__pycache__' -type d -exec rm -rf '{}' '+'
-RUN rm -rf /opt/conda/envs/nmma/lib/python3.9/site-packages/pip
-RUN rm -rf /opt/conda/envs/nmma/lib/python3.9/i{dlelib, ensurepip}
+RUN rm -rf /opt/conda/envs/nmma/lib/python3.12/site-packages/pip
+RUN rm -rf /opt/conda/envs/nmma/lib/python3.12/i{dlelib, ensurepip}
 RUN rm -rf /opt/conda/envs/nmma/lib{a,t,l,u}san.so
 RUN find -name '*.a' -delete
 

{nmma-0.2.1 → nmma-0.2.3}/api/environment.yml

@@ -4,7 +4,7 @@ channels:
 - conda-forge
 
 dependencies:
-- python=3.9.*
+- python=3.12.*
 - numpy
 - numcodecs
 - h5py

{nmma-0.2.1 → nmma-0.2.3}/doc/index.rst

@@ -120,7 +120,7 @@ Check python and pip version like this:
    python --version
    pip --version
 
-Python 3.9 and above and Pip 21.2 and above is ideal for this
+Python 3.10 and above and Pip 21.2 and above is ideal for this
 installation. It is recommended to update these for your installation.
 
 
@@ -348,7 +348,7 @@ If you want to install a custom lalsuite version (e.g. with a certain GW templat
 
 .. code::
 
-   conda create -c conda-forge --prefix=YOUR_PREFIX python=3.9
+   conda create -c conda-forge --prefix=YOUR_PREFIX python=3.10
    conda activate YOUR_PREFIX
 
 and then installing mpi4py first before installing the required packages for the build process (here the second line):
@@ -485,6 +485,7 @@ User Guide
    models
    training
    data_inj_obs
+   systematics
    fitting
    lfi_analysis
    gw_inference