nmdc-schema 11.11.1__tar.gz → 11.12.0rc1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (117) hide show
  1. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/PKG-INFO +1 -1
  2. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/nmdc-pydantic.py +601 -224
  3. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/nmdc.py +133 -39
  4. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/nmdc.schema.json +37 -14
  5. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/nmdc_materialized_patterns.json +1090 -57
  6. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/nmdc_materialized_patterns.schema.json +37 -14
  7. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/nmdc_materialized_patterns.yaml +845 -52
  8. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/pyproject.toml +12 -1
  9. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/LICENSE +0 -0
  10. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/README.md +0 -0
  11. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/README.md +0 -0
  12. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/__init__.py +0 -0
  13. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/anyuri_strings_to_iris.py +0 -0
  14. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/dump_single_modality.py +0 -0
  15. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/get_json_schema.py +0 -0
  16. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/get_nmdc_view.py +0 -0
  17. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/gold-to-mixs.sssom.tsv +0 -0
  18. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/id_helpers.py +0 -0
  19. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migration_recursion.py +0 -0
  20. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/.docker/.env.example +0 -0
  21. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/.docker/docker-compose.yaml +0 -0
  22. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/.docker/mongoKeyFile +0 -0
  23. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/.docker/mongo_init/initialize_replica_set.sh +0 -0
  24. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/.docker/wait-for-it.sh +0 -0
  25. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/README.md +0 -0
  26. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/__init__.py +0 -0
  27. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/adapters/adapter_base.py +0 -0
  28. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/adapters/dictionary_adapter.py +0 -0
  29. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/adapters/mongo_adapter.py +0 -0
  30. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/adapters/test_dictionary_adapter.py +0 -0
  31. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/adapters/test_mongo_adapter.py +0 -0
  32. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/assets/migrator_from_10_2_0_to_11_0_0_part_08/instrument_set.yaml +0 -0
  33. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/assets/migrator_from_11_7_to_11_8/data_category_map.yaml +0 -0
  34. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/assets/migrator_from_8_1_to_9_0/study_dois_changes.yaml +0 -0
  35. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/assets/migrator_from_9_1_to_9_2/websites_dois.yaml +0 -0
  36. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/cli/README.md +0 -0
  37. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/cli/__init__.py +0 -0
  38. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/cli/create_migrator.py +0 -0
  39. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/cli/migrator.py.template +0 -0
  40. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/cli/run_migrator.py +0 -0
  41. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/helpers.py +0 -0
  42. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migration_reporter.py +0 -0
  43. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_base.py +0 -0
  44. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_10_0_0_to_10_1_2.py +0 -0
  45. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_10_2_0_to_11_0_0.py +0 -0
  46. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_10_3_0_to_10_4_0.py +0 -0
  47. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_10_4_0_to_10_5_4.py +0 -0
  48. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_10_5_4_to_10_5_5.py +0 -0
  49. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_10_5_5_to_10_5_6.py +0 -0
  50. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_10_5_6_to_10_6_0.py +0 -0
  51. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_10_6_0_to_10_7_0.py +0 -0
  52. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_0_3_to_11_1_0.py +0 -0
  53. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_10_0_to_11_11_0.py +0 -0
  54. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_1_0_to_11_2_0.py +0 -0
  55. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_3_0_to_11_4_0.py +0 -0
  56. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_4_0_to_11_5_0.py +0 -0
  57. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_5_0_to_11_5_1.py +0 -0
  58. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_5_1_to_11_6_0.py +0 -0
  59. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_6_0_to_11_6_1.py +0 -0
  60. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_6_1_to_11_7_0.py +0 -0
  61. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_7_0_to_11_8_0.py +0 -0
  62. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_8_0_to_11_9_0.py +0 -0
  63. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_11_9_1_to_11_10_0.py +0 -0
  64. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_1_0_0_to_EXAMPLE.py +0 -0
  65. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_7_7_2_to_7_8_0.py +0 -0
  66. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_7_8_0_to_8_0_0.py +0 -0
  67. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_8_0_to_8_1.py +0 -0
  68. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_8_1_to_9_0.py +0 -0
  69. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_9_1_to_9_2.py +0 -0
  70. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/migrator_from_9_3_to_10_0.py +0 -0
  71. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/README.md +0 -0
  72. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/__init__.py +0 -0
  73. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_01.py +0 -0
  74. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_02.py +0 -0
  75. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_03.py +0 -0
  76. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_04.py +0 -0
  77. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_05.py +0 -0
  78. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_06.py +0 -0
  79. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_07.py +0 -0
  80. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_08.py +0 -0
  81. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_09.py +0 -0
  82. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_10.py +0 -0
  83. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_11.py +0 -0
  84. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_12.py +0 -0
  85. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_13.py +0 -0
  86. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_14.py +0 -0
  87. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_15.py +0 -0
  88. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_10_2_0_to_11_0_0/migrator_from_10_2_0_to_11_0_0_part_16.py +0 -0
  89. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_0_3_to_11_1_0/__init__.py +0 -0
  90. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_0_3_to_11_1_0/migrator_from_11_0_3_to_11_1_0_part_1.py +0 -0
  91. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_0_3_to_11_1_0/migrator_from_11_0_3_to_11_1_0_part_2.py +0 -0
  92. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_0_3_to_11_1_0/migrator_from_11_0_3_to_11_1_0_part_3.py +0 -0
  93. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/__init__.py +0 -0
  94. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/migrator_from_11_10_0_to_11_11_0_part_1.py +0 -0
  95. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/migrator_from_11_10_0_to_11_11_0_part_2.py +0 -0
  96. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_1_0_to_11_2_0/__init__.py +0 -0
  97. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_1_0_to_11_2_0/migrator_from_11_1_0_to_11_2_0_part_1.py +0 -0
  98. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_1_0_to_11_2_0/migrator_from_11_1_0_to_11_2_0_part_2.py +0 -0
  99. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_5_1_to_11_6_0/__init__.py +0 -0
  100. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_5_1_to_11_6_0/migrator_from_11_5_1_to_11_6_0_part_1.py +0 -0
  101. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_5_1_to_11_6_0/migrator_from_11_5_1_to_11_6_0_part_2.py +0 -0
  102. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_7_0_to_11_8_0/__init__.py +0 -0
  103. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_7_0_to_11_8_0/migrator_from_11_7_0_to_11_8_0_part_1.py +0 -0
  104. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_7_0_to_11_8_0/migrator_from_11_7_0_to_11_8_0_part_2.py +0 -0
  105. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_7_0_to_11_8_0/migrator_from_11_7_0_to_11_8_0_part_3.py +0 -0
  106. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_7_0_to_11_8_0/migrator_from_11_7_0_to_11_8_0_part_4.py +0 -0
  107. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_7_0_to_11_8_0/migrator_from_11_7_0_to_11_8_0_part_5.py +0 -0
  108. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_8_0_to_11_9_0/__init__.py +0 -0
  109. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_8_0_to_11_9_0/migrator_from_11_8_0_to_11_9_0_part_1.py +0 -0
  110. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_8_0_to_11_9_0/migrator_from_11_8_0_to_11_9_0_part_2.py +0 -0
  111. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/__init__.py +0 -0
  112. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/migrator_from_11_9_1_to_11_10_0_part_1.py +0 -0
  113. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/migrator_from_11_9_1_to_11_10_0_part_2.py +0 -0
  114. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/migrator_from_11_9_1_to_11_10_0_part_3.py +0 -0
  115. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/nmdc_data.py +0 -0
  116. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/nmdc_version.py +0 -0
  117. {nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/nmdc_schema/validate_nmdc_json.py +0 -0
{nmdc_schema-11.11.1 → nmdc_schema-11.12.0rc1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: nmdc_schema
3
- Version: 11.11.1
3
+ Version: 11.12.0rc1
4
4
  Summary: Schema resources for the National Microbiome Data Collaborative (NMDC)
5
5
  License: MIT
6
6
  License-File: LICENSE