niwrap-workbench 0.5.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (207) hide show
  1. niwrap_workbench-0.5.0/.gitignore +301 -0
  2. niwrap_workbench-0.5.0/PKG-INFO +8 -0
  3. niwrap_workbench-0.5.0/README.md +7 -0
  4. niwrap_workbench-0.5.0/pyproject.toml +17 -0
  5. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/__init__.py +217 -0
  6. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/add_to_spec_file.py +267 -0
  7. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/annotation_resample.py +258 -0
  8. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/backend_average_dense_roi.py +191 -0
  9. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/backend_average_roi_correlation.py +193 -0
  10. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/border_export_color_table.py +200 -0
  11. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/border_file_export_to_caret5.py +289 -0
  12. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/border_length.py +234 -0
  13. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/border_merge.py +363 -0
  14. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/border_resample.py +213 -0
  15. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/border_to_rois.py +230 -0
  16. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/border_to_vertices.py +212 -0
  17. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_all_labels_to_rois.py +207 -0
  18. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_average.py +335 -0
  19. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_average_dense_roi.py +413 -0
  20. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_average_roi_correlation.py +417 -0
  21. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_change_mapping.py +409 -0
  22. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_convert.py +1084 -0
  23. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_correlation.py +381 -0
  24. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_correlation_gradient.py +592 -0
  25. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_create_dense_from_template.py +696 -0
  26. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_create_dense_scalar.py +540 -0
  27. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_create_dense_timeseries.py +584 -0
  28. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_create_label.py +536 -0
  29. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_create_parcellated_from_template.py +280 -0
  30. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_create_scalar_series.py +299 -0
  31. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_cross_correlation.py +252 -0
  32. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_dilate.py +493 -0
  33. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_erode.py +442 -0
  34. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_estimate_fwhm.py +399 -0
  35. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_export_dense_mapping.py +476 -0
  36. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_extrema.py +425 -0
  37. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_false_correlation.py +424 -0
  38. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_find_clusters.py +631 -0
  39. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_gradient.py +483 -0
  40. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_label_adjacency.py +240 -0
  41. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_label_export_table.py +195 -0
  42. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_label_import.py +278 -0
  43. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_label_modify_keys.py +236 -0
  44. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_label_probability.py +208 -0
  45. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_label_to_border.py +307 -0
  46. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_label_to_roi.py +238 -0
  47. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_math.py +483 -0
  48. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_merge.py +405 -0
  49. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_merge_dense.py +266 -0
  50. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_merge_parcels.py +251 -0
  51. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_pairwise_correlation.py +221 -0
  52. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_palette.py +763 -0
  53. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_parcel_mapping_to_label.py +215 -0
  54. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_parcellate.py +553 -0
  55. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_reduce.py +324 -0
  56. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_reorder.py +219 -0
  57. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_replace_structure.py +552 -0
  58. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_resample.py +1292 -0
  59. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_resample_dconn_memory.py +1274 -0
  60. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_restrict_dense_map.py +282 -0
  61. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_roi_average.py +264 -0
  62. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_rois_from_extrema.py +359 -0
  63. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_separate.py +739 -0
  64. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_smoothing.py +508 -0
  65. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_stats.py +344 -0
  66. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_transpose.py +206 -0
  67. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_vector_operation.py +265 -0
  68. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/cifti_weighted_stats.py +512 -0
  69. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/convert_affine.py +474 -0
  70. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/convert_fiber_orientations.py +349 -0
  71. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/convert_matrix4_to_matrix2.py +322 -0
  72. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/convert_matrix4_to_workbench_sparse.py +300 -0
  73. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/convert_warpfield.py +427 -0
  74. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/create_signed_distance_volume.py +327 -0
  75. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/estimate_fiber_binghams.py +335 -0
  76. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/fiber_dot_products.py +240 -0
  77. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/file_convert.py +379 -0
  78. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/file_information.py +405 -0
  79. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/foci_create.py +282 -0
  80. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/foci_get_projection_vertex.py +214 -0
  81. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/foci_list_coords.py +202 -0
  82. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/foci_resample.py +402 -0
  83. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/gifti_all_labels_to_rois.py +201 -0
  84. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/gifti_convert.py +203 -0
  85. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/gifti_label_add_prefix.py +197 -0
  86. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/gifti_label_to_roi.py +238 -0
  87. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_dilate.py +262 -0
  88. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_erode.py +262 -0
  89. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_export_table.py +187 -0
  90. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_mask.py +216 -0
  91. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_merge.py +365 -0
  92. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_modify_keys.py +236 -0
  93. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_probability.py +208 -0
  94. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_resample.py +435 -0
  95. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_to_border.py +231 -0
  96. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/label_to_volume_mapping.py +315 -0
  97. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metadata_remove_provenance.py +185 -0
  98. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metadata_string_replace.py +212 -0
  99. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_convert.py +371 -0
  100. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_dilate.py +351 -0
  101. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_erode.py +262 -0
  102. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_estimate_fwhm.py +276 -0
  103. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_extrema.py +449 -0
  104. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_false_correlation.py +261 -0
  105. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_fill_holes.py +216 -0
  106. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_find_clusters.py +328 -0
  107. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_gradient.py +436 -0
  108. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_label_import.py +293 -0
  109. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_mask.py +216 -0
  110. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_math.py +417 -0
  111. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_merge.py +365 -0
  112. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_palette.py +747 -0
  113. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_reduce.py +309 -0
  114. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_regression.py +361 -0
  115. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_remove_islands.py +216 -0
  116. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_resample.py +439 -0
  117. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_rois_from_extrema.py +279 -0
  118. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_rois_to_border.py +237 -0
  119. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_smoothing.py +419 -0
  120. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_stats.py +344 -0
  121. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_tfce.py +412 -0
  122. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_to_volume_mapping.py +319 -0
  123. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_vector_operation.py +265 -0
  124. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_vector_toward_roi.py +214 -0
  125. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/metric_weighted_stats.py +408 -0
  126. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/nifti_information.py +305 -0
  127. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/probtrackx_dot_convert.py +575 -0
  128. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/scene_capture_image.py +714 -0
  129. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/scene_file_merge.py +359 -0
  130. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/scene_file_relocate.py +191 -0
  131. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/scene_file_update.py +472 -0
  132. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/set_map_names.py +274 -0
  133. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/set_structure.py +329 -0
  134. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/signed_distance_to_surface.py +246 -0
  135. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/spec_file_merge.py +195 -0
  136. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/spec_file_relocate.py +191 -0
  137. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_affine_regression.py +201 -0
  138. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_apply_affine.py +266 -0
  139. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_apply_warpfield.py +224 -0
  140. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_average.py +299 -0
  141. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_closest_vertex.py +203 -0
  142. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_coordinates_to_metric.py +189 -0
  143. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_cortex_layer.py +234 -0
  144. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_create_sphere.py +209 -0
  145. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_curvature.py +216 -0
  146. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_cut_resample.py +213 -0
  147. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_distortion.py +372 -0
  148. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_flip_lr.py +197 -0
  149. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_flip_normals.py +199 -0
  150. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_generate_inflated.py +223 -0
  151. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_geodesic_distance.py +266 -0
  152. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_geodesic_distance_all_to_all.py +281 -0
  153. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_geodesic_rois.py +291 -0
  154. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_inflation.py +231 -0
  155. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_information.py +179 -0
  156. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_match.py +195 -0
  157. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_modify_sphere.py +220 -0
  158. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_normals.py +191 -0
  159. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_resample.py +386 -0
  160. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_set_coordinates.py +205 -0
  161. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_smoothing.py +207 -0
  162. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_sphere_project_unproject.py +313 -0
  163. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_sphere_triangular_patches.py +197 -0
  164. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_to_surface_3d_distance.py +219 -0
  165. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_vertex_areas.py +191 -0
  166. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/surface_wedge_volume.py +201 -0
  167. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_all_labels_to_rois.py +201 -0
  168. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_capture_plane.py +321 -0
  169. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_components_to_frames.py +191 -0
  170. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_copy_extensions.py +214 -0
  171. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_create.py +405 -0
  172. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_dilate.py +426 -0
  173. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_distortion.py +244 -0
  174. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_erode.py +231 -0
  175. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_estimate_fwhm.py +272 -0
  176. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_extrema.py +431 -0
  177. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_fill_holes.py +191 -0
  178. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_find_clusters.py +307 -0
  179. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_gradient.py +310 -0
  180. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_label_export_table.py +195 -0
  181. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_label_import.py +297 -0
  182. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_label_modify_keys.py +236 -0
  183. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_label_probability.py +206 -0
  184. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_label_to_roi.py +238 -0
  185. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_label_to_surface_mapping.py +330 -0
  186. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_math.py +416 -0
  187. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_merge.py +365 -0
  188. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_palette.py +749 -0
  189. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_parcel_resampling.py +266 -0
  190. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_parcel_resampling_generic.py +264 -0
  191. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_parcel_smoothing.py +246 -0
  192. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_reduce.py +309 -0
  193. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_remove_islands.py +191 -0
  194. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_reorient.py +213 -0
  195. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_resample.py +521 -0
  196. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_rois_from_extrema.py +271 -0
  197. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_set_space.py +452 -0
  198. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_smoothing.py +267 -0
  199. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_stats.py +344 -0
  200. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_tfce.py +377 -0
  201. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_to_surface_mapping.py +692 -0
  202. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_vector_operation.py +265 -0
  203. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_warpfield_affine_regression.py +293 -0
  204. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/volume_weighted_stats.py +435 -0
  205. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/wbsparse_merge_dense.py +245 -0
  206. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/zip_scene_file.py +240 -0
  207. niwrap_workbench-0.5.0/src/niwrap_workbench/workbench/zip_spec_file.py +233 -0
@@ -0,0 +1,301 @@
1
+ # NODE #
2
+
3
+ # Logs
4
+ logs
5
+ *.log
6
+ npm-debug.log*
7
+ yarn-debug.log*
8
+ yarn-error.log*
9
+ lerna-debug.log*
10
+ .pnpm-debug.log*
11
+
12
+ # Diagnostic reports (https://nodejs.org/api/report.html)
13
+ report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json
14
+
15
+ # Runtime data
16
+ pids
17
+ *.pid
18
+ *.seed
19
+ *.pid.lock
20
+
21
+ # Directory for instrumented libs generated by jscoverage/JSCover
22
+ lib-cov
23
+
24
+ # Coverage directory used by tools like istanbul
25
+ coverage
26
+ *.lcov
27
+
28
+ # nyc test coverage
29
+ .nyc_output
30
+
31
+ # Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
32
+ .grunt
33
+
34
+ # Bower dependency directory (https://bower.io/)
35
+ bower_components
36
+
37
+ # node-waf configuration
38
+ .lock-wscript
39
+
40
+ # Compiled binary addons (https://nodejs.org/api/addons.html)
41
+ build/Release
42
+
43
+ # Dependency directories
44
+ node_modules/
45
+ jspm_packages/
46
+
47
+ # Snowpack dependency directory (https://snowpack.dev/)
48
+ web_modules/
49
+
50
+ # TypeScript cache
51
+ *.tsbuildinfo
52
+
53
+ # Optional npm cache directory
54
+ .npm
55
+
56
+ # Optional eslint cache
57
+ .eslintcache
58
+
59
+ # Optional stylelint cache
60
+ .stylelintcache
61
+
62
+ # Microbundle cache
63
+ .rpt2_cache/
64
+ .rts2_cache_cjs/
65
+ .rts2_cache_es/
66
+ .rts2_cache_umd/
67
+
68
+ # Optional REPL history
69
+ .node_repl_history
70
+
71
+ # Output of 'npm pack'
72
+ *.tgz
73
+
74
+ # Yarn Integrity file
75
+ .yarn-integrity
76
+
77
+ # dotenv environment variable files
78
+ .env
79
+ .env.development.local
80
+ .env.test.local
81
+ .env.production.local
82
+ .env.local
83
+
84
+ # parcel-bundler cache (https://parceljs.org/)
85
+ .cache
86
+ .parcel-cache
87
+
88
+ # Next.js build output
89
+ .next
90
+ out
91
+
92
+ # Nuxt.js build / generate output
93
+ .nuxt
94
+ dist
95
+
96
+ # Gatsby files
97
+ .cache/
98
+ # Comment in the public line in if your project uses Gatsby and not Next.js
99
+ # https://nextjs.org/blog/next-9-1#public-directory-support
100
+ # public
101
+
102
+ # vuepress build output
103
+ .vuepress/dist
104
+
105
+ # vuepress v2.x temp and cache directory
106
+ .temp
107
+ .cache
108
+
109
+ # Docusaurus cache and generated files
110
+ .docusaurus
111
+
112
+ # Serverless directories
113
+ .serverless/
114
+
115
+ # FuseBox cache
116
+ .fusebox/
117
+
118
+ # DynamoDB Local files
119
+ .dynamodb/
120
+
121
+ # TernJS port file
122
+ .tern-port
123
+
124
+ # Stores VSCode versions used for testing VSCode extensions
125
+ .vscode-test
126
+
127
+ # yarn v2
128
+ .yarn/cache
129
+ .yarn/unplugged
130
+ .yarn/build-state.yml
131
+ .yarn/install-state.gz
132
+ .pnp.*
133
+
134
+ # PYTHON #
135
+
136
+ # Byte-compiled / optimized / DLL files
137
+ __pycache__/
138
+ *.py[cod]
139
+ *$py.class
140
+
141
+ # C extensions
142
+ *.so
143
+
144
+ # Distribution / packaging
145
+ .Python
146
+ build/
147
+ develop-eggs/
148
+ dist/
149
+ downloads/
150
+ eggs/
151
+ .eggs/
152
+ lib/
153
+ lib64/
154
+ parts/
155
+ sdist/
156
+ var/
157
+ wheels/
158
+ share/python-wheels/
159
+ *.egg-info/
160
+ .installed.cfg
161
+ *.egg
162
+ MANIFEST
163
+
164
+ # PyInstaller
165
+ # Usually these files are written by a python script from a template
166
+ # before PyInstaller builds the exe, so as to inject date/other infos into it.
167
+ *.manifest
168
+ *.spec
169
+
170
+ # Installer logs
171
+ pip-log.txt
172
+ pip-delete-this-directory.txt
173
+
174
+ # Unit test / coverage reports
175
+ htmlcov/
176
+ .tox/
177
+ .nox/
178
+ .coverage
179
+ .coverage.*
180
+ .cache
181
+ nosetests.xml
182
+ coverage.xml
183
+ *.cover
184
+ *.py,cover
185
+ .hypothesis/
186
+ .pytest_cache/
187
+ cover/
188
+
189
+ # Translations
190
+ *.mo
191
+ *.pot
192
+
193
+ # Django stuff:
194
+ *.log
195
+ local_settings.py
196
+ db.sqlite3
197
+ db.sqlite3-journal
198
+
199
+ # Flask stuff:
200
+ instance/
201
+ .webassets-cache
202
+
203
+ # Scrapy stuff:
204
+ .scrapy
205
+
206
+ # Sphinx documentation
207
+ docs/_build/
208
+
209
+ # PyBuilder
210
+ .pybuilder/
211
+ target/
212
+
213
+ # Jupyter Notebook
214
+ .ipynb_checkpoints
215
+
216
+ # IPython
217
+ profile_default/
218
+ ipython_config.py
219
+
220
+ # pyenv
221
+ # For a library or package, you might want to ignore these files since the code is
222
+ # intended to run in multiple environments; otherwise, check them in:
223
+ # .python-version
224
+
225
+ # pipenv
226
+ # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
227
+ # However, in case of collaboration, if having platform-specific dependencies or dependencies
228
+ # having no cross-platform support, pipenv may install dependencies that don't work, or not
229
+ # install all needed dependencies.
230
+ #Pipfile.lock
231
+
232
+ # poetry
233
+ # Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
234
+ # This is especially recommended for binary packages to ensure reproducibility, and is more
235
+ # commonly ignored for libraries.
236
+ # https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
237
+ #poetry.lock
238
+
239
+ # pdm
240
+ # Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
241
+ #pdm.lock
242
+ # pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
243
+ # in version control.
244
+ # https://pdm.fming.dev/#use-with-ide
245
+ .pdm.toml
246
+
247
+ # PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
248
+ __pypackages__/
249
+
250
+ # Celery stuff
251
+ celerybeat-schedule
252
+ celerybeat.pid
253
+
254
+ # SageMath parsed files
255
+ *.sage.py
256
+
257
+ # Environments
258
+ .env
259
+ .venv
260
+ env/
261
+ *venv/
262
+ ENV/
263
+ env.bak/
264
+ venv.bak/
265
+
266
+ # Spyder project settings
267
+ .spyderproject
268
+ .spyproject
269
+
270
+ # Rope project settings
271
+ .ropeproject
272
+
273
+ # mkdocs documentation
274
+ /site
275
+
276
+ # mypy
277
+ .mypy_cache/
278
+ .dmypy.json
279
+ dmypy.json
280
+
281
+ # Pyre type checker
282
+ .pyre/
283
+
284
+ # pytype static type analyzer
285
+ .pytype/
286
+
287
+ # Cython debug symbols
288
+ cython_debug/
289
+
290
+ # PyCharm
291
+ # JetBrains specific template is maintained in a separate JetBrains.gitignore that can
292
+ # be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
293
+ # and can be added to the global gitignore or merged into this file. For a more nuclear
294
+ # option (not recommended) you can uncomment the following to ignore the entire idea folder.
295
+ .idea/
296
+
297
+ .vscode
298
+ /local_scripts
299
+ report.html
300
+ assets
301
+ styx_tmp
@@ -0,0 +1,8 @@
1
+ Metadata-Version: 2.4
2
+ Name: niwrap_workbench
3
+ Version: 0.5.0
4
+ Summary: NiWrap wrappers for Connectome Workbench.
5
+ Author-email: CMI DAIR <dair@childmind.org>
6
+ License-Expression: LGPL-2.1
7
+ Requires-Python: >=3.10
8
+ Requires-Dist: styxdefs~=0.5.0
@@ -0,0 +1,7 @@
1
+ # NiWrap wrappers for [Connectome Workbench](https://github.com/Washington-University/workbench)
2
+
3
+ Connectome Workbench is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project. The distribution includes wb_view, a GUI-based visualiation platform, and wb_command, a command-line program for performing a variety of algorithmic tasks using volume, surface, and grayordinate data. wb_command is necessary for running HCP data processing pipelines.
4
+
5
+ Connectome Workbench is made by Connectome Workbench Developers.
6
+
7
+ This package contains wrappers only and has no affiliation with the original authors.
@@ -0,0 +1,17 @@
1
+ [project]
2
+ name = "niwrap_workbench"
3
+ version = "0.5.0"
4
+ description = "NiWrap wrappers for Connectome Workbench."
5
+ license = "LGPL-2.1"
6
+ authors = [{ name = "CMI DAIR", email = "dair@childmind.org" }]
7
+ requires-python = ">=3.10"
8
+ dependencies = [
9
+ "styxdefs~=0.5.0"
10
+ ]
11
+
12
+ [tool.hatch.build.targets.wheel]
13
+ packages = ["src/niwrap_workbench"]
14
+
15
+ [build-system]
16
+ requires = ["hatchling"]
17
+ build-backend = "hatchling.build"
@@ -0,0 +1,217 @@
1
+ """
2
+ Connectome Workbench
3
+
4
+ Connectome Workbench is an open source, freely available visualization and
5
+ discovery tool used to map neuroimaging data, especially data generated by the
6
+ Human Connectome Project. The distribution includes wb_view, a GUI-based
7
+ visualiation platform, and wb_command, a command-line program for performing a
8
+ variety of algorithmic tasks using volume, surface, and grayordinate data.
9
+ wb_command is necessary for running HCP data processing pipelines.
10
+
11
+ URL: https://github.com/Washington-University/workbench
12
+ """
13
+ # This file was auto generated by Styx.
14
+ # Do not edit this file directly.
15
+
16
+ from .add_to_spec_file import *
17
+ from .annotation_resample import *
18
+ from .backend_average_dense_roi import *
19
+ from .backend_average_roi_correlation import *
20
+ from .border_export_color_table import *
21
+ from .border_file_export_to_caret5 import *
22
+ from .border_length import *
23
+ from .border_merge import *
24
+ from .border_resample import *
25
+ from .border_to_rois import *
26
+ from .border_to_vertices import *
27
+ from .cifti_all_labels_to_rois import *
28
+ from .cifti_average import *
29
+ from .cifti_average_dense_roi import *
30
+ from .cifti_average_roi_correlation import *
31
+ from .cifti_change_mapping import *
32
+ from .cifti_convert import *
33
+ from .cifti_correlation import *
34
+ from .cifti_correlation_gradient import *
35
+ from .cifti_create_dense_from_template import *
36
+ from .cifti_create_dense_scalar import *
37
+ from .cifti_create_dense_timeseries import *
38
+ from .cifti_create_label import *
39
+ from .cifti_create_parcellated_from_template import *
40
+ from .cifti_create_scalar_series import *
41
+ from .cifti_cross_correlation import *
42
+ from .cifti_dilate import *
43
+ from .cifti_erode import *
44
+ from .cifti_estimate_fwhm import *
45
+ from .cifti_export_dense_mapping import *
46
+ from .cifti_extrema import *
47
+ from .cifti_false_correlation import *
48
+ from .cifti_find_clusters import *
49
+ from .cifti_gradient import *
50
+ from .cifti_label_adjacency import *
51
+ from .cifti_label_export_table import *
52
+ from .cifti_label_import import *
53
+ from .cifti_label_modify_keys import *
54
+ from .cifti_label_probability import *
55
+ from .cifti_label_to_border import *
56
+ from .cifti_label_to_roi import *
57
+ from .cifti_math import *
58
+ from .cifti_merge import *
59
+ from .cifti_merge_dense import *
60
+ from .cifti_merge_parcels import *
61
+ from .cifti_pairwise_correlation import *
62
+ from .cifti_palette import *
63
+ from .cifti_parcel_mapping_to_label import *
64
+ from .cifti_parcellate import *
65
+ from .cifti_reduce import *
66
+ from .cifti_reorder import *
67
+ from .cifti_replace_structure import *
68
+ from .cifti_resample import *
69
+ from .cifti_resample_dconn_memory import *
70
+ from .cifti_restrict_dense_map import *
71
+ from .cifti_roi_average import *
72
+ from .cifti_rois_from_extrema import *
73
+ from .cifti_separate import *
74
+ from .cifti_smoothing import *
75
+ from .cifti_stats import *
76
+ from .cifti_transpose import *
77
+ from .cifti_vector_operation import *
78
+ from .cifti_weighted_stats import *
79
+ from .convert_affine import *
80
+ from .convert_fiber_orientations import *
81
+ from .convert_matrix4_to_matrix2 import *
82
+ from .convert_matrix4_to_workbench_sparse import *
83
+ from .convert_warpfield import *
84
+ from .create_signed_distance_volume import *
85
+ from .estimate_fiber_binghams import *
86
+ from .fiber_dot_products import *
87
+ from .file_convert import *
88
+ from .file_information import *
89
+ from .foci_create import *
90
+ from .foci_get_projection_vertex import *
91
+ from .foci_list_coords import *
92
+ from .foci_resample import *
93
+ from .gifti_all_labels_to_rois import *
94
+ from .gifti_convert import *
95
+ from .gifti_label_add_prefix import *
96
+ from .gifti_label_to_roi import *
97
+ from .label_dilate import *
98
+ from .label_erode import *
99
+ from .label_export_table import *
100
+ from .label_mask import *
101
+ from .label_merge import *
102
+ from .label_modify_keys import *
103
+ from .label_probability import *
104
+ from .label_resample import *
105
+ from .label_to_border import *
106
+ from .label_to_volume_mapping import *
107
+ from .metadata_remove_provenance import *
108
+ from .metadata_string_replace import *
109
+ from .metric_convert import *
110
+ from .metric_dilate import *
111
+ from .metric_erode import *
112
+ from .metric_estimate_fwhm import *
113
+ from .metric_extrema import *
114
+ from .metric_false_correlation import *
115
+ from .metric_fill_holes import *
116
+ from .metric_find_clusters import *
117
+ from .metric_gradient import *
118
+ from .metric_label_import import *
119
+ from .metric_mask import *
120
+ from .metric_math import *
121
+ from .metric_merge import *
122
+ from .metric_palette import *
123
+ from .metric_reduce import *
124
+ from .metric_regression import *
125
+ from .metric_remove_islands import *
126
+ from .metric_resample import *
127
+ from .metric_rois_from_extrema import *
128
+ from .metric_rois_to_border import *
129
+ from .metric_smoothing import *
130
+ from .metric_stats import *
131
+ from .metric_tfce import *
132
+ from .metric_to_volume_mapping import *
133
+ from .metric_vector_operation import *
134
+ from .metric_vector_toward_roi import *
135
+ from .metric_weighted_stats import *
136
+ from .nifti_information import *
137
+ from .probtrackx_dot_convert import *
138
+ from .scene_capture_image import *
139
+ from .scene_file_merge import *
140
+ from .scene_file_relocate import *
141
+ from .scene_file_update import *
142
+ from .set_map_names import *
143
+ from .set_structure import *
144
+ from .signed_distance_to_surface import *
145
+ from .spec_file_merge import *
146
+ from .spec_file_relocate import *
147
+ from .surface_affine_regression import *
148
+ from .surface_apply_affine import *
149
+ from .surface_apply_warpfield import *
150
+ from .surface_average import *
151
+ from .surface_closest_vertex import *
152
+ from .surface_coordinates_to_metric import *
153
+ from .surface_cortex_layer import *
154
+ from .surface_create_sphere import *
155
+ from .surface_curvature import *
156
+ from .surface_cut_resample import *
157
+ from .surface_distortion import *
158
+ from .surface_flip_lr import *
159
+ from .surface_flip_normals import *
160
+ from .surface_generate_inflated import *
161
+ from .surface_geodesic_distance import *
162
+ from .surface_geodesic_distance_all_to_all import *
163
+ from .surface_geodesic_rois import *
164
+ from .surface_inflation import *
165
+ from .surface_information import *
166
+ from .surface_match import *
167
+ from .surface_modify_sphere import *
168
+ from .surface_normals import *
169
+ from .surface_resample import *
170
+ from .surface_set_coordinates import *
171
+ from .surface_smoothing import *
172
+ from .surface_sphere_project_unproject import *
173
+ from .surface_sphere_triangular_patches import *
174
+ from .surface_to_surface_3d_distance import *
175
+ from .surface_vertex_areas import *
176
+ from .surface_wedge_volume import *
177
+ from .volume_all_labels_to_rois import *
178
+ from .volume_capture_plane import *
179
+ from .volume_components_to_frames import *
180
+ from .volume_copy_extensions import *
181
+ from .volume_create import *
182
+ from .volume_dilate import *
183
+ from .volume_distortion import *
184
+ from .volume_erode import *
185
+ from .volume_estimate_fwhm import *
186
+ from .volume_extrema import *
187
+ from .volume_fill_holes import *
188
+ from .volume_find_clusters import *
189
+ from .volume_gradient import *
190
+ from .volume_label_export_table import *
191
+ from .volume_label_import import *
192
+ from .volume_label_modify_keys import *
193
+ from .volume_label_probability import *
194
+ from .volume_label_to_roi import *
195
+ from .volume_label_to_surface_mapping import *
196
+ from .volume_math import *
197
+ from .volume_merge import *
198
+ from .volume_palette import *
199
+ from .volume_parcel_resampling import *
200
+ from .volume_parcel_resampling_generic import *
201
+ from .volume_parcel_smoothing import *
202
+ from .volume_reduce import *
203
+ from .volume_remove_islands import *
204
+ from .volume_reorient import *
205
+ from .volume_resample import *
206
+ from .volume_rois_from_extrema import *
207
+ from .volume_set_space import *
208
+ from .volume_smoothing import *
209
+ from .volume_stats import *
210
+ from .volume_tfce import *
211
+ from .volume_to_surface_mapping import *
212
+ from .volume_vector_operation import *
213
+ from .volume_warpfield_affine_regression import *
214
+ from .volume_weighted_stats import *
215
+ from .wbsparse_merge_dense import *
216
+ from .zip_scene_file import *
217
+ from .zip_spec_file import *