nimare 0.5.0rc1__tar.gz → 0.5.0rc2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (129) hide show
  1. {nimare-0.5.0rc1/nimare.egg-info → nimare-0.5.0rc2}/PKG-INFO +1 -1
  2. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/_version.py +3 -3
  3. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/utils.py +1 -1
  4. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/utils.py +3 -3
  5. {nimare-0.5.0rc1 → nimare-0.5.0rc2/nimare.egg-info}/PKG-INFO +1 -1
  6. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/LICENSE +0 -0
  7. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/MANIFEST.in +0 -0
  8. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/README.md +0 -0
  9. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/benchmarks/__init__.py +0 -0
  10. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/benchmarks/bench_cbma.py +0 -0
  11. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/__init__.py +0 -0
  12. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/annotate/__init__.py +0 -0
  13. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/annotate/cogat.py +0 -0
  14. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/annotate/gclda.py +0 -0
  15. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/annotate/lda.py +0 -0
  16. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/annotate/text.py +0 -0
  17. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/annotate/utils.py +0 -0
  18. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/base.py +0 -0
  19. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/cli.py +0 -0
  20. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/correct.py +0 -0
  21. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/dataset.py +0 -0
  22. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/decode/__init__.py +0 -0
  23. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/decode/base.py +0 -0
  24. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/decode/continuous.py +0 -0
  25. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/decode/discrete.py +0 -0
  26. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/decode/encode.py +0 -0
  27. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/decode/utils.py +0 -0
  28. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/diagnostics.py +0 -0
  29. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/estimator.py +0 -0
  30. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/extract/__init__.py +0 -0
  31. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/extract/extract.py +0 -0
  32. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/extract/utils.py +0 -0
  33. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/generate.py +0 -0
  34. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/io.py +0 -0
  35. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/__init__.py +0 -0
  36. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/cbma/__init__.py +0 -0
  37. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/cbma/ale.py +0 -0
  38. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/cbma/base.py +0 -0
  39. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/cbma/mkda.py +0 -0
  40. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/cbmr.py +0 -0
  41. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/ibma.py +0 -0
  42. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/kernel.py +0 -0
  43. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/models.py +0 -0
  44. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/nimads.py +0 -0
  45. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/reports/__init__.py +0 -0
  46. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/reports/base.py +0 -0
  47. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/reports/default.yml +0 -0
  48. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/reports/figures.py +0 -0
  49. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/reports/report.tpl +0 -0
  50. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/__init__.py +0 -0
  51. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/atlases/Harvard-Oxford-LICENSE +0 -0
  52. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/atlases/HarvardOxford-cort-maxprob-thr25-2mm.nii.gz +0 -0
  53. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/database_file_manifest.json +0 -0
  54. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/english_spellings.csv +0 -0
  55. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/filenames.json +0 -0
  56. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/neurosynth_laird_studies.json +0 -0
  57. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/neurosynth_stoplist.txt +0 -0
  58. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/nidm_pain_dset.json +0 -0
  59. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/references.bib +0 -0
  60. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/semantic_knowledge_children.txt +0 -0
  61. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/semantic_relatedness_children.txt +0 -0
  62. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/templates/MNI152_2x2x2_brainmask.nii.gz +0 -0
  63. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/templates/tpl-MNI152NLin6Asym_res-01_T1w.nii.gz +0 -0
  64. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/templates/tpl-MNI152NLin6Asym_res-01_desc-brain_mask.nii.gz +0 -0
  65. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/templates/tpl-MNI152NLin6Asym_res-02_T1w.nii.gz +0 -0
  66. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/resources/templates/tpl-MNI152NLin6Asym_res-02_desc-brain_mask.nii.gz +0 -0
  67. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/results.py +0 -0
  68. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/stats.py +0 -0
  69. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/__init__.py +0 -0
  70. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/conftest.py +0 -0
  71. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/amygdala_roi.nii.gz +0 -0
  72. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/data-neurosynth_version-7_coordinates.tsv.gz +0 -0
  73. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/data-neurosynth_version-7_metadata.tsv.gz +0 -0
  74. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/data-neurosynth_version-7_vocab-terms_source-abstract_type-tfidf_features.npz +0 -0
  75. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/data-neurosynth_version-7_vocab-terms_vocabulary.txt +0 -0
  76. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/neurosynth_dset.json +0 -0
  77. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/neurosynth_laird_studies.json +0 -0
  78. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/nidm_pain_dset.json +0 -0
  79. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/nimads_annotation.json +0 -0
  80. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/nimads_studyset.json +0 -0
  81. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/test_baseline.txt +0 -0
  82. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/test_pain_dataset.json +0 -0
  83. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/test_pain_dataset_multiple_contrasts.json +0 -0
  84. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/test_sleuth_file.txt +0 -0
  85. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/test_sleuth_file2.txt +0 -0
  86. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/test_sleuth_file3.txt +0 -0
  87. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/test_sleuth_file4.txt +0 -0
  88. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/data/test_sleuth_file5.txt +0 -0
  89. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_annotate_cogat.py +0 -0
  90. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_annotate_gclda.py +0 -0
  91. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_annotate_lda.py +0 -0
  92. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_dataset.py +0 -0
  93. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_decode_continuous.py +0 -0
  94. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_decode_discrete.py +0 -0
  95. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_diagnostics.py +0 -0
  96. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_estimator_performance.py +0 -0
  97. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_extract.py +0 -0
  98. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_generate.py +0 -0
  99. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_io.py +0 -0
  100. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_meta_ale.py +0 -0
  101. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_meta_cbmr.py +0 -0
  102. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_meta_ibma.py +0 -0
  103. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_meta_kernel.py +0 -0
  104. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_meta_mkda.py +0 -0
  105. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_nimads.py +0 -0
  106. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_reports.py +0 -0
  107. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_stats.py +0 -0
  108. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_transforms.py +0 -0
  109. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_utils.py +0 -0
  110. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/test_workflows.py +0 -0
  111. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/tests/utils.py +0 -0
  112. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/transforms.py +0 -0
  113. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/workflows/__init__.py +0 -0
  114. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/workflows/base.py +0 -0
  115. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/workflows/cbma.py +0 -0
  116. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/workflows/ibma.py +0 -0
  117. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/workflows/macm.py +0 -0
  118. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/workflows/misc.py +0 -0
  119. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare.egg-info/SOURCES.txt +0 -0
  120. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare.egg-info/dependency_links.txt +0 -0
  121. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare.egg-info/entry_points.txt +0 -0
  122. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare.egg-info/not-zip-safe +0 -0
  123. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare.egg-info/requires.txt +0 -0
  124. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare.egg-info/top_level.txt +0 -0
  125. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/pypi_description.md +0 -0
  126. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/pyproject.toml +0 -0
  127. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/setup.cfg +0 -0
  128. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/setup.py +0 -0
  129. {nimare-0.5.0rc1 → nimare-0.5.0rc2}/versioneer.py +0 -0
{nimare-0.5.0rc1/nimare.egg-info → nimare-0.5.0rc2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: nimare
3
- Version: 0.5.0rc1
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+ Version: 0.5.0rc2
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4
  Summary: NiMARE: Neuroimaging Meta-Analysis Research Environment
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5
  Home-page: https://github.com/neurostuff/NiMARE
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  Author: NiMARE developers
{nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/_version.py RENAMED
@@ -8,11 +8,11 @@ import json
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8
 
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  version_json = '''
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  {
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- "date": "2025-03-13T11:20:33-0500",
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+ "date": "2025-04-25T13:22:39-0500",
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  "dirty": false,
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  "error": null,
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- "full-revisionid": "71d779964e5756b89c6237e1550112d9c8a77498",
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- "version": "0.5.0rc1"
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+ "full-revisionid": "9e3b73cbb6235b31a4fab7a9a118e32c1d2f9932",
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+ "version": "0.5.0rc2"
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  }
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  ''' # END VERSION_JSON
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{nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/utils.py RENAMED
@@ -33,7 +33,7 @@ def _convolve_sphere(kernel, ijks, index, max_shape):
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  def np_all_axis1(x):
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  """Numba compatible version of np.all(x, axis=1)."""
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- out = np.ones(x.shape[0], dtype=np.bool8)
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+ out = np.ones(x.shape[0], dtype=np.bool_)
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  for i in range(x.shape[1]):
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  out = np.logical_and(out, x[:, i])
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  return out
{nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/utils.py RENAMED
@@ -1286,9 +1286,9 @@ def b_spline_bases(masker_voxels, spacing, margin=10):
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  x_spline_coords = x_spline.nonzero()
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  y_spline_coords = y_spline.nonzero()
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  z_spline_coords = z_spline.nonzero()
1289
- x_spline_sparse = sparse.COO(x_spline_coords, x_spline[x_spline_coords])
1290
- y_spline_sparse = sparse.COO(y_spline_coords, y_spline[y_spline_coords])
1291
- z_spline_sparse = sparse.COO(z_spline_coords, z_spline[z_spline_coords])
1289
+ x_spline_sparse = sparse.COO(x_spline_coords, x_spline[x_spline_coords], shape=x_spline.shape)
1290
+ y_spline_sparse = sparse.COO(y_spline_coords, y_spline[y_spline_coords], shape=y_spline.shape)
1291
+ z_spline_sparse = sparse.COO(z_spline_coords, z_spline[z_spline_coords], shape=z_spline.shape)
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  # create spatial design matrix by tensor product of spline bases in 3 dimesion
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  # Row sums of X are all 1=> There is no need to re-normalise X
{nimare-0.5.0rc1 → nimare-0.5.0rc2/nimare.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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2
  Name: nimare
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- Version: 0.5.0rc1
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+ Version: 0.5.0rc2
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  Summary: NiMARE: Neuroimaging Meta-Analysis Research Environment
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5
  Home-page: https://github.com/neurostuff/NiMARE
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  Author: NiMARE developers
{nimare-0.5.0rc1 → nimare-0.5.0rc2}/LICENSE RENAMED
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{nimare-0.5.0rc1 → nimare-0.5.0rc2}/MANIFEST.in RENAMED
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{nimare-0.5.0rc1 → nimare-0.5.0rc2}/nimare/meta/cbmr.py RENAMED
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{nimare-0.5.0rc1 → nimare-0.5.0rc2}/setup.cfg RENAMED
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{nimare-0.5.0rc1 → nimare-0.5.0rc2}/setup.py RENAMED
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{nimare-0.5.0rc1 → nimare-0.5.0rc2}/versioneer.py RENAMED
File without changes