ngstrefftz 0.3.2402.dev35__tar.gz → 0.3.2402.dev152__tar.gz

{ngstrefftz-0.3.2402.dev35 → ngstrefftz-0.3.2402.dev152}/.github/workflows/build.yml

@@ -13,135 +13,88 @@ env:
 
 jobs:
 
-  pypi-linux:
-    name: Build wheels for linux
+  test_linux:
+    name: Test on Linux
     runs-on: ubuntu-latest
-    #container:
-      #image: quay.io/pypa/manylinux2014_x86_64:latest
-      #image: sameli/manylinux2014_x86_64_cuda_11
     steps:
-      - name: clear cache
-        run: rm -rf /opt/hostedtoolcache
       - uses: actions/checkout@v4
         with:
           submodules: 'True'
           path: 'NGSTrefftz'
           fetch-depth: 0 # otherwise, you will fail to push refs to dest repo
-      - name: pull manylinux
-        run: docker pull sameli/manylinux2014_x86_64_cuda_11.7
-      - name: run test
-        run: docker run -v $GITHUB_WORKSPACE:/workspace sameli/manylinux2014_x86_64_cuda_11.7 /bin/sh /workspace/NGSTrefftz/.github/workflows/build_linux_test.sh
-      - name: build pip
-        run: docker run -v $GITHUB_WORKSPACE:/workspace sameli/manylinux2014_x86_64_cuda_11.7 /bin/sh /workspace/NGSTrefftz/.github/workflows/build_pip.sh 
-      - name: Store the binary wheel
-        uses: actions/upload-artifact@v4
-        with:
-          name: python-package-distributions-linux
-          path: NGSTrefftz/wheelhouse
-
-  pypi-mac:
-    name: Build wheels for macOS
-    strategy:
-      matrix:
-        py: ['3.8', '3.9', '3.10', '3.11', '3.12']
-    runs-on: macos-11
-    env:
-      MACOSX_DEPLOYMENT_TARGET: '10.15'
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
-          submodules: recursive
-          path: 'NGSTrefftz'
-      - name: Get Python ${{ matrix.py }}
-        uses: actions/setup-python@v5
-        with:
-          python-version: ${{ matrix.py }}
-      - name: Run build script
-        run: cd NGSTrefftz/.github/workflows && bash build_pip_mac.sh ${{ matrix.py }}
-      - name: Store the binary wheel
-        uses: actions/upload-artifact@v4
+      - uses: actions/setup-python@v5
         with:
-          name: python-package-distributions-mac-${{ matrix.py }}
-          path: NGSTrefftz/wheelhouse
+          python-version: '3.12'
+      - name: install ngstrefftz
+        run: cd NGSTrefftz && pip install numpy scipy mkl-devel==2024.* mkl==2024.* && pip install . -v
+      - name: run test
+        run: cd $GITHUB_WORKSPACE/NGSTrefftz/test && python3 -m doctest -v *.py
 
-  pypi-win:
-    name: Build wheels for Windows
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}
+    needs: [ test_linux ]
+    runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        py: ['3.8', '3.9', '3.10', '3.11', '3.12']
-    runs-on: windows-2019
+        os: [ubuntu-latest, macos-13]
+        include:
+          - os: windows-2019
+            cibw-arch: AMD64
+            cmake-generator: "Visual Studio 16 2019"
+            cmake_generator_platform: "x64"
     steps:
-      - name: Checkout
-        uses: actions/checkout@v4
+      - uses: actions/checkout@v4
         with:
-          submodules: recursive
+          submodules: 'True'
+          fetch-tags: 'true'
           fetch-depth: 0
-          path: 'NGSTrefftz'
-      - name: Get Python ${{ matrix.py }}
-        id: python
-        uses: actions/setup-python@v5
-        with:
-          python-version: ${{ matrix.py }}
-      - name: Run build script
-        run: Set-Location NGSTrefftz/.github/workflows; ./build_pip.ps1 ${{ env.pythonLocation }}
-      - name: Store the binary wheel
-        uses: actions/upload-artifact@v4
-        with:
-          name: python-package-distributions-win-${{ matrix.py }}
-          path: NGSTrefftz/wheelhouse
+      - name: Build wheels
+        uses: pypa/cibuildwheel@v2.19.0
+        env:
+          CIBW_BUILD_VERBOSITY: 1
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+          path: ./wheelhouse/*.whl
 
-  pypi-src:
-    name: pypi src
+  build_sdist:
+    name: Build source distribution
+    needs: [ test_linux ]
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
         with:
           submodules: 'True'
+          fetch-tags: 'true'
           fetch-depth: 0
-          path: 'NGSTrefftz'
-      - name: install pkgs
-        run: |
-             sudo apt-get update && DEBIAN_FRONTEND="noninteractive" sudo apt-get -y install vim python3 python3-pip python3-distutils python3-tk libpython3-dev libxmu-dev tk-dev tcl-dev cmake git g++ libglu1-mesa-dev libblas-dev liblapack-dev
-      - name: Update pip and Install setuptools
-        run: |
-          python3 -m pip install --upgrade pip
-          python3 -m pip install -U pytest-check numpy wheel scikit-build mkl==2023.* mkl-devel==2023.* setuptools setuptools_scm
-          python3 -m pip install ngsolve --pre
-      - name: Package ngstrefftz sources for PyPI
-        run: cd NGSTrefftz && python3 setup.py sdist -d wheelhouse
-      #- name: pip install ngstrefftz
-        #run: pip install dist/*
-      - name: Store the sdist
-        uses: actions/upload-artifact@v4
+      - name: Build sdist
+        run: pipx run build --sdist
+      - uses: actions/upload-artifact@v4
         with:
-          name: python-package-distributions-src
-          path: NGSTrefftz/wheelhouse
+          name: cibw-sdist
+          path: dist/*.tar.gz
 
-  publish-pypi:
-    name: Publish to PyPI
-    #if: github.event_name == 'release' && github.event.action == 'created' 
-    needs: [pypi-linux, pypi-mac, pypi-win, pypi-src]
+  upload_pypi:
+    needs: [build_wheels, build_sdist]
     runs-on: ubuntu-latest
+    environment: pypi
+    permissions:
+      id-token: write
     steps:
-    - name: Download all the dists
-      uses: actions/download-artifact@v4
-      with:
-        pattern: python-package-distributions-*
-        merge-multiple: true
-        path: NGSTrefftz/wheelhouse/
-    - name: Publish binary distributions to PyPI
-      if: github.ref == 'refs/heads/main' || github.event_name == 'release'
-      uses: pypa/gh-action-pypi-publish@release/v1
-      with:
-        skip-existing: true
-        password: ${{ secrets.PYPI_API_TOKEN }}
-        packages-dir: NGSTrefftz/wheelhouse/
-        #repository-url: https://test.pypi.org/legacy/
+      - uses: actions/download-artifact@v4
+        with:
+          pattern: cibw-*
+          path: dist
+          merge-multiple: true
+      - uses: pypa/gh-action-pypi-publish@release/v1
+        if: github.ref == 'refs/heads/main' || github.event_name == 'release'
+        with:
+          skip-existing: true
+          password: ${{ secrets.PYPI_API_TOKEN }}
+          # To test: repository-url: https://test.pypi.org/legacy/
 
   docker:
-    needs: [publish-pypi]
+    needs: [upload_pypi]
     runs-on: ubuntu-latest
     steps:
       - name: clear cache
@@ -208,10 +161,8 @@ jobs:
           name: ngst-pyodide
           path: ./ngst-pyodide
 
-
-
   docs:
-    needs: [publish-pypi]
+    needs: [upload_pypi]
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4

ngstrefftz-0.3.2402.dev152/.gitignore

@@ -0,0 +1,15 @@
+# build folder
+make/
+
+# python
+__pycache__/
+jupyter_execute/
+
+# Clangd support file
+compile_commands.json
+
+# Cache files
+.cache/
+
+# any debug output
+*.out

ngstrefftz-0.3.2402.dev152/CMakeLists.txt

@@ -0,0 +1,204 @@
+cmake_minimum_required(VERSION 3.16)
+########################################################
+project(ngstrefftz)
+########################################################
+if(NOT WIN32)
+  string(ASCII 27 Esc)
+  set(ColourReset "${Esc}[m")
+  set(Red         "${Esc}[31m")
+  set(BoldCyan    "${Esc}[1;36m")
+  set(BoldWhite   "${Esc}[1;37m")
+endif()
+
+file(DOWNLOAD https://raw.githubusercontent.com/NGSolve/ngsolve-addon-template/main/ngsolve_addon.cmake ${CMAKE_BINARY_DIR}/cmake_modules/ngsolve_addon.cmake)
+set(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH}" "${CMAKE_BINARY_DIR}/cmake_modules")
+set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR} CACHE PATH "build dir")
+
+### ngstrefftz
+set(addon_name _trefftz)
+project(_trefftz)
+include_directories(${CMAKE_SOURCE_DIR}/external_dependencies/ngstents/src)
+include(${CMAKE_BINARY_DIR}/cmake_modules/ngsolve_addon.cmake)
+add_ngsolve_addon( _trefftz 
+    ${CMAKE_SOURCE_DIR}/external_dependencies/ngstents/src/tents.cpp
+    src/python_trefftz.cpp
+    src/diffopmapped.hpp
+    src/scalarmappedfe.cpp
+    src/planewavefe.cpp
+    src/trefftzfespace.cpp
+    src/specialcoefficientfunction.cpp
+    src/specialintegrator.cpp
+    src/twavetents.cpp
+    src/embtrefftz.cpp
+    src/monomialfespace.cpp 
+    src/mesh1dtents.cpp
+    src/condensedg.cpp
+    src/pufe.cpp
+    src/pufespace.cpp
+    #src/airy.cpp #for testing, requires boost
+  )
+target_compile_definitions(_trefftz PRIVATE NGSTREFFTZ_EXPORTS)
+target_compile_definitions(_trefftz PRIVATE NGSTENT_EXPORTS)
+
+### link LAPACK or MKL if possible
+set(NGSTREFFTZ_USE_MKL ${NGSOLVE_USE_MKL} CACHE BOOL "Try to use mkl")
+set(NGSTREFFTZ_USE_LAPACK ${NGSOLVE_USE_LAPACK} CACHE BOOL "Try to use lapack from ngsolve")
+if (NGSTREFFTZ_USE_MKL)
+    file(DOWNLOAD 
+    https://raw.githubusercontent.com/NGSolve/ngsolve/master/cmake/cmake_modules/FindMKL.cmake 
+    "${CMAKE_BINARY_DIR}/cmake_modules/FindMKL.cmake")
+
+    #file(COPY ${CMAKE_SOURCE_DIR}/FindMKL.cmake DESTINATION 
+    #"${CMAKE_BINARY_DIR}/cmake_modules/FindMKL.cmake")
+
+    #message(STATUS "MKL_ROOT=${MKL_ROOT}")
+    #message(STATUS "NGSOLVED=${NGSolve_DIR}")
+
+
+    #set(PIP_MKL_ROOT FALSE CACHE BOOL "Set to true if MKL_ROOT is set by pip")
+    #message(STATUS "PIP_MKL_ROOT=${PIP_MKL_ROOT}")
+    #if(PIP_MKL_ROOT AND LINUX)
+        #set(MKL_ROOT "${NGSolve_DIR}/../../.." CACHE PATH "MKL root directory" )
+        #set(MKL_LIBRARY "${MKL_ROOT}/lib/libmkl_rt.so.2" CACHE PATH "MKL library" )
+        #set(MKL_INCLUDE_DIR "${MKL_ROOT}/include" CACHE PATH "MKL include directory" )
+        #message(STATUS "set MKL_LIBRARY=${MKL_LIBRARY}")
+    #elseif(PIP_MKL_ROOT AND WIN32)
+        #set(MKL_ROOT "${NGSolve_DIR}/../../../.." CACHE PATH "MKL root directory" )
+        #set(MKL_LIBRARY "${MKL_ROOT}/Library/lib/mkl_rt.lib" CACHE PATH "MKL library" )
+        #set(MKL_INCLUDE_DIR "${MKL_ROOT}/Library/include" CACHE PATH "MKL include directory" )
+    #endif()
+
+    set(MKL_ARCH "intel64")
+    if(NOT MKL_INTERFACE)
+        set(MKL_INTERFACE "lp64")
+    endif(NOT MKL_INTERFACE)
+    set(MKL_MULTI_THREADED ON CACHE BOOL "Use threaded MKL libs")
+    if(NOT MKL_MULTI_THREADED)
+      set(MKL_THREADING sequential)
+    endif()
+    set(MKL_STATIC OFF CACHE BOOL "Link static MKL")
+    set(MKL_SDL ON CACHE BOOL "Link single dynamic MKL lib")
+    if(NOT MKL_LINK)
+      if(MKL_STATIC)
+        set(MKL_LINK static)
+      elseif(MKL_SDL)
+        set(MKL_LINK sdl)
+      else()
+        set(MKL_LINK dynamic)
+      endif()
+    endif()
+
+    file(WRITE ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/findmklconf.py 
+        "from contextlib import suppress;import importlib.metadata; \
+        [print( f.locate().parent.resolve().absolute().as_posix()) \
+        if f.match('MKLConfig.cmake') else 0 for f in importlib.metadata.files('mkl-devel')]")
+    execute_process(COMMAND ${Python3_EXECUTABLE} ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/findmklconf.py
+        ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE OUTPUT_VARIABLE MKL_CONF_FROM_PY)
+    if(MKL_CONF_FROM_PY)
+        message(STATUS "MKL_CONF_FROM_PY=${MKL_CONF_FROM_PY}")
+        message(STATUS "pylibdir=${python3_library_dir}")
+        set(MKL_ROOT "${MKL_CONF_FROM_PY}/../../.." CACHE PATH "MKL root directory" )
+        set(MKL_LIBRARY "${MKL_ROOT}/lib/libmkl_rt.so.2" CACHE PATH "MKL library" )
+        set(MKL_INCLUDE_DIR "${MKL_ROOT}/include" CACHE PATH "MKL include directory" )
+    endif()
+    #set(MKL_VERSION_H "${MKL_ROOT}/include/mkl_version.h")
+
+    #set(d lib/cmake/mkl)
+    #find_package(MKL CONFIG REQUIRED HINTS ${MKL_CONF} ${MKL_ROOT}/${d} PATHS /opt/intel/oneapi/mkl/latest/${d} ~/.local/${d})
+
+    unset(USE_MPI CACHE)
+    find_package(MKL)
+
+    #if(USE_MUMPS)
+        ## include scalapack
+        #set( LAPACK_LIBRARIES "${MKL_LIBRARIES}")
+        #set( ENABLE_SCALAPACK ON)
+    #else(USE_MUMPS)
+        #set( LAPACK_LIBRARIES "${MKL_MINIMAL_LIBRARIES}")
+    #endif(USE_MUMPS)
+
+    if(MKL_FOUND)
+        message(STATUS "Found MKL_MINIMAL_LIBRARIES=${MKL_MINIMAL_LIBRARIES}")
+        set( LAPACK_LIBRARIES "${MKL_MINIMAL_LIBRARIES}")
+    else()
+        message("${Red}MKL not found!${ColourReset}")
+    endif()
+endif (NGSTREFFTZ_USE_MKL)
+if(NGSTREFFTZ_USE_LAPACK AND NOT LAPACK_LIBRARIES)
+    message(STATUS "Looking for LAPACK")
+    find_package(LAPACK)
+endif(NGSTREFFTZ_USE_LAPACK AND NOT LAPACK_LIBRARIES)
+if(LAPACK_LIBRARIES)
+    #target_link_libraries(_trefftz PRIVATE $<BUILD_INTERFACE:ngs_lapack>)
+    message(STATUS "Linking with LAPACK_LIBRARIES=${LAPACK_LIBRARIES}")
+    target_link_libraries(_trefftz PRIVATE ${LAPACK_LIBRARIES})
+    target_compile_definitions(_trefftz PRIVATE NGSTREFFTZ_USE_LAPACK)
+else(LAPACK_LIBRARIES)
+    message("${Red}LAPACK not found, restricted usage${ColourReset}")
+endif(LAPACK_LIBRARIES)
+
+### doc 
+option(BUILD_DOC "Build documentation" OFF)
+if (BUILD_DOC)
+    find_package(Doxygen REQUIRED)
+    set(DOXYGEN_IN ${CMAKE_CURRENT_SOURCE_DIR}/docs/Doxyfile.in)
+    set(DOXYGEN_OUT ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile)
+    configure_file(${DOXYGEN_IN} ${DOXYGEN_OUT} @ONLY)
+    add_custom_target( doxygen
+        COMMAND ${DOXYGEN_EXECUTABLE} ${DOXYGEN_OUT}
+        WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+        COMMENT "Generating API documentation with Doxygen"
+        VERBATIM )
+endif (BUILD_DOC)
+
+### install
+set_target_properties(_trefftz PROPERTIES LIBRARY_OUTPUT_DIRECTORY "${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/ngstrefftz")
+file(COPY ${CMAKE_SOURCE_DIR}/src/__init__.py DESTINATION ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/ngstrefftz)
+set(install_dir ${ADDON_INSTALL_DIR_PYTHON}/ngstrefftz)
+install(TARGETS _trefftz DESTINATION ${install_dir})
+install(FILES src/__init__.py DESTINATION ${install_dir})
+#ngsolve_generate_stub_files(${addon_name})
+
+message("${BoldCyan}
+------------------------------------------------------------------------
+  Build type: ${CMAKE_BUILD_TYPE}
+  Compiler: ${CMAKE_CXX_COMPILER}
+  Flags: ${flags}
+
+  Enabled functionality:
+    LAPACK: ............ ${NGSTREFFTZ_USE_LAPACK} 
+    MKL: ............... ${NGSTREFFTZ_USE_MKL}
+    Doxygen: ........... ${BUILD_DOC}
+
+With 'make install' the package will be installed to: ${CMAKE_INSTALL_PREFIX}
+Make sure to add it to the python path: 
+-->   export PYTHONPATH=${CMAKE_INSTALL_PREFIX}/${python3_library_dir}:$PYTHONPATH
+------------------------------------------------------------------------
+\n${ColourReset}")
+
+### tests 
+include(CTest)
+file(COPY 
+    ${CMAKE_SOURCE_DIR}/test/dg.py
+    ${CMAKE_SOURCE_DIR}/test/embt.py
+    ${CMAKE_SOURCE_DIR}/test/trefftz.py
+    ${CMAKE_SOURCE_DIR}/test/tents.py
+    ${CMAKE_SOURCE_DIR}/test/constrained_trefftz.py
+    DESTINATION ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/Testing)
+add_test(NAME embtrefftz COMMAND python3 -m doctest ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/Testing/embt.py)
+add_test(NAME constrained_trefftz COMMAND python3 -m doctest ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/Testing/constrained_trefftz.py)
+add_test(NAME trefftz COMMAND python3 -m doctest ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/Testing/trefftz.py)
+add_test(NAME tents COMMAND python3 -m doctest ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/Testing/tents.py)
+#WORKING_DIRECTORY ${ CMAKE_CURRENT_SOURCE_DIR }
+set_tests_properties(embtrefftz trefftz tents
+    PROPERTIES ENVIRONMENT "PYTHONPATH=${CMAKE_LIBRARY_OUTPUT_DIRECTORY}:${NGSOLVE_INSTALL_DIR}/${NGSOLVE_INSTALL_DIR_PYTHON}:$ENV{PYTHONPATH}")
+
+# make uninstall
+add_custom_target("uninstall" COMMENT "Uninstall installed files")
+add_custom_command(
+    TARGET "uninstall"
+    POST_BUILD
+    COMMENT "Uninstall files with install_manifest.txt"
+    COMMAND xargs rm -vf < install_manifest.txt || echo Nothing in
+            install_manifest.txt to be uninstalled!
+)

{ngstrefftz-0.3.2402.dev35 → ngstrefftz-0.3.2402.dev152}/Dockerfile

@@ -2,6 +2,11 @@ FROM python:3.10-slim-bullseye
 
 WORKDIR /home/app
 
+#RUN apt --yes update && apt --yes install git pandoc sphinx
+#COPY . /home/app/ngstrefftz
+#RUN cd /home/app/ngstrefftz/docs && pip install -r requirements.txt
+#RUN cd /home/app/ngstrefftz/docs && sphinx-build -M html . _build -vvv
+
 RUN pip install ngstrefftz 
 ENV PYTHONPATH=$PYTHONPATH:/usr/local/lib/python3.10/site-packages/
 ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib/

ngstrefftz-0.3.2402.dev152/PKG-INFO

@@ -0,0 +1,101 @@
+Metadata-Version: 2.1
+Name: ngstrefftz
+Version: 0.3.2402.dev152
+Summary: NGSTrefftz is an add-on to NGSolve for Trefftz methods.
+Author-Email: Paul Stocker <paul.stocker@univie.ac.at>
+Classifier: License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
+Project-URL: Documentation, https://paulst.github.io/NGSTrefftz
+Project-URL: Repository, https://github.com/PaulSt/ngstrefftz
+Requires-Python: >=3.8
+Requires-Dist: mkl>=2024.2.0
+Requires-Dist: ngsolve>=6.2.2404.post22.dev0
+Description-Content-Type: text/markdown
+
+# NGSTrefftz
+**an add-on to NGSolve for Trefftz methods**
+
+[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/PaulSt/NGSTrefftz/HEAD?filepath=docs%2Fnotebooks%2Findex.ipynb)
+[![Docker Image Version (latest semver)](https://img.shields.io/docker/v/paulstdocker/ngstrefftz?label=docker&logo=docker&sort=semver)](https://hub.docker.com/r/paulstdocker/ngstrefftz)
+[![PyPI](https://img.shields.io/pypi/v/ngstrefftz?color=blue&logo=pypi)](https://pypi.org/project/ngstrefftz/)
+[![GitHub Workflow Status](https://github.com/PaulSt/NGSTrefftz/actions/workflows/build.yml/badge.svg?branch=main)](https://github.com/PaulSt/NGSTrefftz/actions/workflows/build.yml)
+[![status](https://joss.theoj.org/papers/c2f4e85b118c22b81aa27d7799265409/status.svg)](https://joss.theoj.org/papers/c2f4e85b118c22b81aa27d7799265409)
+[![docs](https://img.shields.io/badge/docs-NGSTrefftz-blue?logo=readthedocs)](https://paulst.github.io/NGSTrefftz/)
+
+NGSTrefftz provides a framework to implement Trefftz finite element spaces for [NGSolve](https://www.ngsolve.org), with several Trefftz spaces already implemented. Additionally, Trefftz-DG on tent-pitched meshes for the acoustic wave equation is implemented using meshes provided by [ngstents](https://github.com/jayggg/ngstents). Furthermore, the package includes an implementation of the embedded Trefftz method.
+
+## Try it out!
+You can try out some jupyter notebooks:
+* Launch the Binder here:   
+  [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/PaulSt/NGSTrefftz/HEAD?filepath=docs%2Fnotebooks%2Findex.ipynb)
+* Or run the docker locally (you need to have docker installed):
+
+```bash
+git clone https://github.com/PaulSt/NGSTrefftz
+cd NGSTrefftz && docker build -t ngstrefftz_jupyter .
+docker run -p 8888:8888 ngstrefftz_jupyter
+```
+
+## Installing the package
+You can either:
+ * install using pip
+
+```bash
+pip install ngstrefftz
+```
+
+ * or build from source
+
+```bash
+git clone --recursive https://github.com/PaulSt/NGSTrefftz
+mkdir ./NGSTrefftz/make && cd ./NGSTrefftz/make
+cmake ../ && make install
+```
+
+### Dependencies
+ * if you are using pip to install the package you can install the newest ngsolve and other dependencies using
+```bash
+pip install ngsolve --pre
+```
+ * if you build the package from source the following software needs to be installed
+   * [cmake](https://cmake.org/) >= 3.1
+   * [gcc](https://gcc.gnu.org/) >= 9 or [clang](https://clang.llvm.org/) >= 10
+   * [lapack](http://www.netlib.org/lapack/) >= 3.9 (required to access the newest features)
+   * [ngsolve](https://www.ngsolve.org) >= 6.2  (to access the newest features the nightly version of NGSolve works best)
+
+## News
+⚠️ Oct, 2022: With v0.2.0 the git history has undergone a major cleanup, please make sure to clone the repo anew.
+
+🚀 Oct, 2022: New and improved implementation of the embedded Trefftz method via `EmbeddedTrefftzFES`!
+
+🚀 Aug, 2022: Three different [pip](https://pypi.org/search/?q=ngstrefftz)-installer available, now using wheels! 
+
+🚀 Mar, 2022: NGSTrefftz now has a [website](https://paulst.github.io/NGSTrefftz/)! 
+
+⚠️ Feb, 2022: If you are using NGSolve nightly releases: [NGSolve@eda758d](https://github.com/NGSolve/ngsolve/commit/eda758d99483888851913d8a5c9aff4d0cbc9cc2) breaks a dependency and [NGSolve@3d52ecd](https://github.com/NGSolve/ngsolve/commit/3d52ecd615f2b7c409219eebaba99288ea19c1bc) produces import issue. Make sure to update ngstrefftz submodules and move to newest ngsolve version, at least [NGSolve@5839a09](https://github.com/NGSolve/ngsolve/commit/5839a09810235a938bd85807d8e638d3a0b6c69d).
+
+🚀 Jan, 2022: NGSTrefftz is now available via pip! 
+
+🚀 Nov, 2021: NGSTrefftz now comes in a docker and with binder notebooks! 
+
+## Papers using the code
+* *Trefftz Discontinuous Galerkin discretization for the Stokes problem*  
+Philip L. Lederer, Christoph Lehrenfeld, Paul Stocker  
+[![arXiv](https://img.shields.io/badge/arXiv-2306.14600-b31b1b.svg)](https://arxiv.org/abs/2306.14600)
+* *Unfitted Trefftz discontinuous Galerkin methods for elliptic boundary value problems*  
+Fabian Heimann, Christoph Lehrenfeld, Paul Stocker, Henry von Wahl  
+[![arXiv](https://img.shields.io/badge/arXiv-2212.12236-b31b1b.svg)](https://arxiv.org/abs/2212.12236)
+* *Embedded Trefftz discontinuous Galerkin methods*  
+Christoph Lehrenfeld, Paul Stocker   
+[![arXiv](https://img.shields.io/badge/arXiv-2201.07041-b31b1b.svg)](https://arxiv.org/abs/2201.07041)
+* *A space-time quasi-Trefftz DG method for the wave equation with piecewise-smooth coefficients*   
+Lise-Marie Imbert-Gérard, Andrea Moiola, Paul Stocker  
+[![arXiv](https://img.shields.io/badge/arXiv-2011.04617-b31b1b.svg)](https://arxiv.org/abs/2011.04617)
+* *Tent pitching and Trefftz-DG method for the acoustic wave equation*  
+Ilaria Perugia, Joachim Schöberl, Paul Stocker, Christoph Wintersteiger   
+[![arXiv](https://img.shields.io/badge/arXiv-1907.02367-b31b1b.svg)](https://arxiv.org/abs/1907.02367)
+
+If you are using `ngstrefftz` in your academic work, please consider citing 
+```
+Stocker, P., (2022). NGSTrefftz: Add-on to NGSolve for Trefftz methods. 
+Journal of Open Source Software, 7(71), 4135, https://doi.org/10.21105/joss.04135
+```

{ngstrefftz-0.3.2402.dev35 → ngstrefftz-0.3.2402.dev152}/README.md

@@ -35,7 +35,7 @@ pip install ngstrefftz
 ```bash
 git clone --recursive https://github.com/PaulSt/NGSTrefftz
 mkdir ./NGSTrefftz/make && cd ./NGSTrefftz/make
-cmake ../src && make install
+cmake ../ && make install
 ```
 
 ### Dependencies

ngstrefftz-0.3.2402.dev152/_version.py

@@ -0,0 +1,16 @@
+# file generated by setuptools_scm
+# don't change, don't track in version control
+TYPE_CHECKING = False
+if TYPE_CHECKING:
+    from typing import Tuple, Union
+    VERSION_TUPLE = Tuple[Union[int, str], ...]
+else:
+    VERSION_TUPLE = object
+
+version: str
+__version__: str
+__version_tuple__: VERSION_TUPLE
+version_tuple: VERSION_TUPLE
+
+__version__ = version = '0.3.2402.dev152'
+__version_tuple__ = version_tuple = (0, 3, 2402, 'dev152')

ngstrefftz-0.3.2402.dev152/docs/Doxyfile.in

@@ -0,0 +1,4 @@
+PROJECT_NAME           = "NGSTrefftz"
+OUTPUT_DIRECTORY       = @CMAKE_CURRENT_BINARY_DIR@/doc_doxygen/
+INPUT                  = @CMAKE_CURRENT_SOURCE_DIR@/src/ @CMAKE_CURRENT_SOURCE_DIR@/docs @NGSOLVE_INSTALL_DIR@/include
+EXTRACT_ALL            = YES

{ngstrefftz-0.3.2402.dev35 → ngstrefftz-0.3.2402.dev152}/docs/index.rst

@@ -54,14 +54,14 @@ NGSTrefftz is an add-On to NGSolve for Trefftz methods.
    notebooks/index.ipynb
    notebooks/laplace.ipynb
    notebooks/helmholtz.ipynb
-   notebooks/tunfitted.ipynb
    notebooks/twave.ipynb
+   notebooks/qtelliptic.ipynb
    notebooks/qtwave.ipynb
-   notebooks/twavetents.ipynb
    notebooks/embTrefftz.ipynb
    notebooks/embTrefftz-poi.ipynb
    notebooks/embTrefftz-wave.ipynb
    notebooks/embTrefftz-helm.ipynb
    notebooks/embTrefftz-adv.ipynb
    notebooks/embTrefftz-stokes.ipynb
-
+   notebooks/tunfitted.ipynb
+   notebooks/twavetents.ipynb

{ngstrefftz-0.3.2402.dev35 → ngstrefftz-0.3.2402.dev152}/docs/intro.rst

@@ -75,7 +75,7 @@ where :math:`h` is the mesh size, :math:`p` is the polynomial degree and :math:`
 
     from ngsolve import *
     from ngstrefftz import *
-    from netgen.geom2d import unit_square
+    from netgen.occ import *
     p=5
 
 For a given mesh we construct the Trefftz finite element space as