ngio 0.4.3__tar.gz → 0.4.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (258) hide show
  1. {ngio-0.4.3 → ngio-0.4.4}/CHANGELOG.md +7 -0
  2. {ngio-0.4.3 → ngio-0.4.4}/PKG-INFO +1 -1
  3. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/ngio_specs/_channels.py +16 -18
  4. {ngio-0.4.3 → ngio-0.4.4}/.copier-answers.yml +0 -0
  5. {ngio-0.4.3 → ngio-0.4.4}/.gitattributes +0 -0
  6. {ngio-0.4.3 → ngio-0.4.4}/.github/ISSUE_TEMPLATE.md +0 -0
  7. {ngio-0.4.3 → ngio-0.4.4}/.github/TEST_FAIL_TEMPLATE.md +0 -0
  8. {ngio-0.4.3 → ngio-0.4.4}/.github/dependabot.yml +0 -0
  9. {ngio-0.4.3 → ngio-0.4.4}/.github/pull_request_template.md +0 -0
  10. {ngio-0.4.3 → ngio-0.4.4}/.github/workflows/build_docs.yml +0 -0
  11. {ngio-0.4.3 → ngio-0.4.4}/.github/workflows/ci.yml +0 -0
  12. {ngio-0.4.3 → ngio-0.4.4}/.gitignore +0 -0
  13. {ngio-0.4.3 → ngio-0.4.4}/.pre-commit-config.yaml +0 -0
  14. {ngio-0.4.3 → ngio-0.4.4}/LICENSE +0 -0
  15. {ngio-0.4.3 → ngio-0.4.4}/README.md +0 -0
  16. {ngio-0.4.3 → ngio-0.4.4}/_typos.toml +0 -0
  17. {ngio-0.4.3 → ngio-0.4.4}/docs/api/hcs.md +0 -0
  18. {ngio-0.4.3 → ngio-0.4.4}/docs/api/images.md +0 -0
  19. {ngio-0.4.3 → ngio-0.4.4}/docs/api/iterators.md +0 -0
  20. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ngio/common.md +0 -0
  21. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ngio/hcs.md +0 -0
  22. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ngio/images.md +0 -0
  23. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ngio/io_pipes.md +0 -0
  24. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ngio/iterators.md +0 -0
  25. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ngio/ngio.md +0 -0
  26. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ngio/tables.md +0 -0
  27. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ngio/transforms.md +0 -0
  28. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ngio/utils.md +0 -0
  29. {ngio-0.4.3 → ngio-0.4.4}/docs/api/ome_zarr_container.md +0 -0
  30. {ngio-0.4.3 → ngio-0.4.4}/docs/api/tables.md +0 -0
  31. {ngio-0.4.3 → ngio-0.4.4}/docs/changelog.md +0 -0
  32. {ngio-0.4.3 → ngio-0.4.4}/docs/code_of_conduct.md +0 -0
  33. {ngio-0.4.3 → ngio-0.4.4}/docs/contributing.md +0 -0
  34. {ngio-0.4.3 → ngio-0.4.4}/docs/getting_started/0_quickstart.md +0 -0
  35. {ngio-0.4.3 → ngio-0.4.4}/docs/getting_started/1_ome_zarr_containers.md +0 -0
  36. {ngio-0.4.3 → ngio-0.4.4}/docs/getting_started/2_images.md +0 -0
  37. {ngio-0.4.3 → ngio-0.4.4}/docs/getting_started/3_tables.md +0 -0
  38. {ngio-0.4.3 → ngio-0.4.4}/docs/getting_started/4_masked_images.md +0 -0
  39. {ngio-0.4.3 → ngio-0.4.4}/docs/getting_started/5_hcs.md +0 -0
  40. {ngio-0.4.3 → ngio-0.4.4}/docs/getting_started/6_iterators.md +0 -0
  41. {ngio-0.4.3 → ngio-0.4.4}/docs/index.md +0 -0
  42. {ngio-0.4.3 → ngio-0.4.4}/docs/table_specs/backend.md +0 -0
  43. {ngio-0.4.3 → ngio-0.4.4}/docs/table_specs/overview.md +0 -0
  44. {ngio-0.4.3 → ngio-0.4.4}/docs/table_specs/table_types/condition_table.md +0 -0
  45. {ngio-0.4.3 → ngio-0.4.4}/docs/table_specs/table_types/custom_table.md +0 -0
  46. {ngio-0.4.3 → ngio-0.4.4}/docs/table_specs/table_types/feature_table.md +0 -0
  47. {ngio-0.4.3 → ngio-0.4.4}/docs/table_specs/table_types/generic_table.md +0 -0
  48. {ngio-0.4.3 → ngio-0.4.4}/docs/table_specs/table_types/masking_roi_table.md +0 -0
  49. {ngio-0.4.3 → ngio-0.4.4}/docs/table_specs/table_types/roi_table.md +0 -0
  50. {ngio-0.4.3 → ngio-0.4.4}/docs/tutorials/create_ome_zarr.ipynb +0 -0
  51. {ngio-0.4.3 → ngio-0.4.4}/docs/tutorials/feature_extraction.ipynb +0 -0
  52. {ngio-0.4.3 → ngio-0.4.4}/docs/tutorials/hcs_exploration.ipynb +0 -0
  53. {ngio-0.4.3 → ngio-0.4.4}/docs/tutorials/image_processing.ipynb +0 -0
  54. {ngio-0.4.3 → ngio-0.4.4}/docs/tutorials/image_segmentation.ipynb +0 -0
  55. {ngio-0.4.3 → ngio-0.4.4}/mkdocs.yml +0 -0
  56. {ngio-0.4.3 → ngio-0.4.4}/pyproject.toml +0 -0
  57. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/__init__.py +0 -0
  58. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/common/__init__.py +0 -0
  59. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/common/_dimensions.py +0 -0
  60. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/common/_masking_roi.py +0 -0
  61. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/common/_pyramid.py +0 -0
  62. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/common/_roi.py +0 -0
  63. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/common/_synt_images_utils.py +0 -0
  64. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/common/_zoom.py +0 -0
  65. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/experimental/__init__.py +0 -0
  66. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/experimental/iterators/__init__.py +0 -0
  67. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/experimental/iterators/_abstract_iterator.py +0 -0
  68. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/experimental/iterators/_feature.py +0 -0
  69. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/experimental/iterators/_image_processing.py +0 -0
  70. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/experimental/iterators/_mappers.py +0 -0
  71. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/experimental/iterators/_rois_utils.py +0 -0
  72. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/experimental/iterators/_segmentation.py +0 -0
  73. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/hcs/__init__.py +0 -0
  74. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/hcs/_plate.py +0 -0
  75. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/images/__init__.py +0 -0
  76. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/images/_abstract_image.py +0 -0
  77. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/images/_create.py +0 -0
  78. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/images/_create_synt_container.py +0 -0
  79. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/images/_image.py +0 -0
  80. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/images/_label.py +0 -0
  81. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/images/_masked_image.py +0 -0
  82. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/images/_ome_zarr_container.py +0 -0
  83. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/images/_table_ops.py +0 -0
  84. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/__init__.py +0 -0
  85. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_io_pipes.py +0 -0
  86. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_io_pipes_masked.py +0 -0
  87. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_io_pipes_roi.py +0 -0
  88. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_io_pipes_types.py +0 -0
  89. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_match_shape.py +0 -0
  90. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_ops_axes.py +0 -0
  91. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_ops_slices.py +0 -0
  92. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_ops_slices_utils.py +0 -0
  93. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_ops_transforms.py +0 -0
  94. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/io_pipes/_zoom_transform.py +0 -0
  95. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/__init__.py +0 -0
  96. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/_meta_handlers.py +0 -0
  97. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/ngio_specs/__init__.py +0 -0
  98. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/ngio_specs/_axes.py +0 -0
  99. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/ngio_specs/_dataset.py +0 -0
  100. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py +0 -0
  101. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/ngio_specs/_ngio_image.py +0 -0
  102. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/ngio_specs/_pixel_size.py +0 -0
  103. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/v04/__init__.py +0 -0
  104. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/v04/_custom_models.py +0 -0
  105. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/ome_zarr_meta/v04/_v04_spec_utils.py +0 -0
  106. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/mask.png +0 -0
  107. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/nuclei.png +0 -0
  108. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/resources/20200812-CardiomyocyteDifferentiation14-Cycle1_B03/raw.jpg +0 -0
  109. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/resources/__init__.py +0 -0
  110. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/resources/resource_model.py +0 -0
  111. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/__init__.py +0 -0
  112. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/_abstract_table.py +0 -0
  113. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/_tables_container.py +0 -0
  114. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/__init__.py +0 -0
  115. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/_abstract_backend.py +0 -0
  116. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/_anndata.py +0 -0
  117. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/_anndata_utils.py +0 -0
  118. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/_csv.py +0 -0
  119. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/_json.py +0 -0
  120. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/_non_zarr_backends.py +0 -0
  121. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/_parquet.py +0 -0
  122. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/_table_backends.py +0 -0
  123. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/backends/_utils.py +0 -0
  124. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/v1/__init__.py +0 -0
  125. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/v1/_condition_table.py +0 -0
  126. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/v1/_feature_table.py +0 -0
  127. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/v1/_generic_table.py +0 -0
  128. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/tables/v1/_roi_table.py +0 -0
  129. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/transforms/__init__.py +0 -0
  130. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/transforms/_zoom.py +0 -0
  131. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/utils/__init__.py +0 -0
  132. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/utils/_datasets.py +0 -0
  133. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/utils/_errors.py +0 -0
  134. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/utils/_fractal_fsspec_store.py +0 -0
  135. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/utils/_logger.py +0 -0
  136. {ngio-0.4.3 → ngio-0.4.4}/src/ngio/utils/_zarr_utils.py +0 -0
  137. {ngio-0.4.3 → ngio-0.4.4}/tests/conftest.py +0 -0
  138. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/.zattrs +0 -0
  139. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/.zgroup +0 -0
  140. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/0/.zarray +0 -0
  141. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/1/.zarray +0 -0
  142. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/labels/.zattrs +0 -0
  143. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/labels/.zgroup +0 -0
  144. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/labels/label/.zattrs +0 -0
  145. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/labels/label/.zgroup +0 -0
  146. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/labels/label/0/.zarray +0 -0
  147. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_c1yx.zarr/labels/label/1/.zarray +0 -0
  148. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_cyx.zarr/.zattrs +0 -0
  149. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_cyx.zarr/.zgroup +0 -0
  150. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_cyx.zarr/0/.zarray +0 -0
  151. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_cyx.zarr/1/.zarray +0 -0
  152. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_cyx.zarr/labels/.zattrs +0 -0
  153. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_cyx.zarr/labels/.zgroup +0 -0
  154. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_cyx.zarr/labels/label/.zattrs +0 -0
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  164. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_czyx.zarr/labels/label/.zattrs +0 -0
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  171. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tcyx.zarr/1/.zarray +0 -0
  172. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tcyx.zarr/labels/.zattrs +0 -0
  173. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tcyx.zarr/labels/.zgroup +0 -0
  174. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tcyx.zarr/labels/label/.zattrs +0 -0
  175. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tcyx.zarr/labels/label/.zgroup +0 -0
  176. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tcyx.zarr/labels/label/0/.zarray +0 -0
  177. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tcyx.zarr/labels/label/1/.zarray +0 -0
  178. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/.zattrs +0 -0
  179. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/.zgroup +0 -0
  180. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/0/.zarray +0 -0
  181. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/1/.zarray +0 -0
  182. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/labels/.zattrs +0 -0
  183. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/labels/.zgroup +0 -0
  184. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/labels/label/.zattrs +0 -0
  185. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/labels/label/.zgroup +0 -0
  186. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/labels/label/0/.zarray +0 -0
  187. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tczyx.zarr/labels/label/1/.zarray +0 -0
  188. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/.zattrs +0 -0
  189. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/.zgroup +0 -0
  190. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/0/.zarray +0 -0
  191. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/1/.zarray +0 -0
  192. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/labels/.zattrs +0 -0
  193. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/labels/.zgroup +0 -0
  194. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/labels/label/.zattrs +0 -0
  195. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/labels/label/.zgroup +0 -0
  196. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/labels/label/0/.zarray +0 -0
  197. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tyx.zarr/labels/label/1/.zarray +0 -0
  198. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/.zattrs +0 -0
  199. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/.zgroup +0 -0
  200. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/0/.zarray +0 -0
  201. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/1/.zarray +0 -0
  202. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/labels/.zattrs +0 -0
  203. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/labels/.zgroup +0 -0
  204. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/labels/label/.zattrs +0 -0
  205. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/labels/label/.zgroup +0 -0
  206. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/labels/label/0/.zarray +0 -0
  207. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_tzyx.zarr/labels/label/1/.zarray +0 -0
  208. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/.zattrs +0 -0
  209. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/.zgroup +0 -0
  210. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/0/.zarray +0 -0
  211. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/1/.zarray +0 -0
  212. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/labels/.zattrs +0 -0
  213. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/labels/.zgroup +0 -0
  214. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/labels/label/.zattrs +0 -0
  215. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/labels/label/.zgroup +0 -0
  216. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/labels/label/0/.zarray +0 -0
  217. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_yx.zarr/labels/label/1/.zarray +0 -0
  218. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/.zattrs +0 -0
  219. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/.zgroup +0 -0
  220. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/0/.zarray +0 -0
  221. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/1/.zarray +0 -0
  222. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/labels/.zattrs +0 -0
  223. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/labels/.zgroup +0 -0
  224. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/labels/label/.zattrs +0 -0
  225. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/labels/label/.zgroup +0 -0
  226. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/labels/label/0/.zarray +0 -0
  227. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/images/test_image_zyx.zarr/labels/label/1/.zarray +0 -0
  228. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/meta/base_ome_zarr_image_meta.json +0 -0
  229. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/meta/base_ome_zarr_image_meta_wrong_axis_order.json +0 -0
  230. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/meta/base_ome_zarr_label_meta.json +0 -0
  231. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/meta/base_ome_zarr_well_meta.json +0 -0
  232. {ngio-0.4.3 → ngio-0.4.4}/tests/data/v04/meta/ome_zarr_well_path_normalization_meta.json +0 -0
  233. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/common/test_dimensions.py +0 -0
  234. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/common/test_pyramid.py +0 -0
  235. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/common/test_roi.py +0 -0
  236. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/common/test_transforms.py +0 -0
  237. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/hcs/test_plate.py +0 -0
  238. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/hcs/test_well.py +0 -0
  239. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/images/test_create.py +0 -0
  240. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/images/test_images.py +0 -0
  241. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/images/test_masked_images.py +0 -0
  242. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/images/test_omezarr_container.py +0 -0
  243. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/images/test_table_ops.py +0 -0
  244. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/io_pipes/test_axes_ops.py +0 -0
  245. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/io_pipes/test_slicing_ops.py +0 -0
  246. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/iterators/test_iterators.py +0 -0
  247. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/ome_zarr_meta/test_image_handler.py +0 -0
  248. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/ome_zarr_meta/test_unit_ngio_specs.py +0 -0
  249. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/ome_zarr_meta/test_unit_v04_utils.py +0 -0
  250. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/tables/test_backends.py +0 -0
  251. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/tables/test_backends_utils.py +0 -0
  252. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/tables/test_feature_table.py +0 -0
  253. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/tables/test_generic_table.py +0 -0
  254. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/tables/test_masking_roi_table_v1.py +0 -0
  255. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/tables/test_roi_table_v1.py +0 -0
  256. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/tables/test_table_group.py +0 -0
  257. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/utils/test_download_datasets.py +0 -0
  258. {ngio-0.4.3 → ngio-0.4.4}/tests/unit/utils/test_zarr_utils.py +0 -0
@@ -1,5 +1,12 @@
1
1
  # Changelog
2
2
 
3
+ ## [v0.4.4]
4
+
5
+ ### Bug Fixes
6
+
7
+ - Fix bug in channel visualization when using hex colors with leading '#'.
8
+ - Remove strict range check in channel window.
9
+
3
10
  ## [v0.4.3]
4
11
 
5
12
  ### Bug Fixes
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ngio
3
- Version: 0.4.3
3
+ Version: 0.4.4
4
4
  Summary: Next Generation file format IO
5
5
  Project-URL: homepage, https://github.com/BioVisionCenter/ngio
6
6
  Project-URL: repository, https://github.com/BioVisionCenter/ngio
@@ -102,6 +102,20 @@ def valid_hex_color(v: str) -> bool:
102
102
  return True
103
103
 
104
104
 
105
+ def into_valid_hex_color(v: str) -> str:
106
+ """Convert a string into a valid hexadecimal color.
107
+
108
+ If the string is already a valid hexadecimal color, return it.
109
+ Otherwise, return a hexadecimal color based on the hash of the string.
110
+ """
111
+ # strip leading '#' if present
112
+ v = v.lstrip("#")
113
+ if valid_hex_color(v):
114
+ return v
115
+
116
+ return NgioColors.semi_random_pick(v.lower()).value
117
+
118
+
105
119
  class ChannelVisualisation(BaseModel):
106
120
  """Channel visualisation model.
107
121
 
@@ -135,13 +149,10 @@ class ChannelVisualisation(BaseModel):
135
149
  """
136
150
  if value is None:
137
151
  return NgioColors.semi_random_pick().value
138
- if isinstance(value, str) and valid_hex_color(value):
139
- return value
152
+ if isinstance(value, str):
153
+ return into_valid_hex_color(value)
140
154
  elif isinstance(value, NgioColors):
141
155
  return value.value
142
- elif isinstance(value, str):
143
- value_lower = value.lower()
144
- return NgioColors.semi_random_pick(value_lower).value
145
156
  else:
146
157
  raise NgioValueError(f"Invalid color {value}.")
147
158
 
@@ -159,19 +170,6 @@ class ChannelVisualisation(BaseModel):
159
170
  data["end"] = start + 1
160
171
  return data
161
172
 
162
- @model_validator(mode="after")
163
- def check_model(self) -> "ChannelVisualisation":
164
- """Check that the start and end values are within the min and max values."""
165
- if self.start < self.min or self.start > self.max:
166
- raise NgioValidationError(
167
- f"Start value {self.start} is out of range [{self.min}, {self.max}]"
168
- )
169
- if self.end < self.min or self.end > self.max:
170
- raise NgioValidationError(
171
- f"End value {self.end} is out of range [{self.min}, {self.max}]"
172
- )
173
- return self
174
-
175
173
  @classmethod
176
174
  def default_init(
177
175
  cls,
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