ngio 0.3.3__tar.gz → 0.3.4__tar.gz

{ngio-0.3.3 → ngio-0.3.4}/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [v0.3.4]
+
+- allow to write as `anndata_v1` for backward compatibility with older ngio versions.
+
 ## [v0.3.3]
 
 ### Chores

{ngio-0.3.3 → ngio-0.3.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ngio
-Version: 0.3.3
+Version: 0.3.4
 Summary: Next Generation file format IO
 Project-URL: homepage, https://github.com/fractal-analytics-platform/ngio
 Project-URL: repository, https://github.com/fractal-analytics-platform/ngio

{ngio-0.3.3 → ngio-0.3.4}/src/ngio/tables/backends/__init__.py

@@ -1,7 +1,7 @@
 """Ngio Tables backend implementations."""
 
 from ngio.tables.backends._abstract_backend import AbstractTableBackend, BackendMeta
-from ngio.tables.backends._anndata import AnnDataBackend
+from ngio.tables.backends._anndata import AnnDataBackend, AnnDataBackendV1
 from ngio.tables.backends._csv import CsvTableBackend
 from ngio.tables.backends._json import JsonTableBackend
 from ngio.tables.backends._parquet import ParquetTableBackend
@@ -31,6 +31,7 @@ from ngio.tables.backends._utils import (
 __all__ = [
     "AbstractTableBackend",
     "AnnDataBackend",
+    "AnnDataBackendV1",
     "BackendMeta",
     "CsvTableBackend",
     "DefaultTableBackend",

{ngio-0.3.3 → ngio-0.3.4}/src/ngio/tables/backends/_anndata.py

@@ -75,3 +75,13 @@ class AnnDataBackend(AbstractTableBackend):
             index_key=self.index_key,
         )
         self.write_from_anndata(anndata)
+
+
+
+class AnnDataBackendV1(AnnDataBackend):
+    """A wrapper for the AnnData backend that for backwards compatibility."""
+
+    @staticmethod
+    def backend_name() -> str:
+        """Return the name of the backend."""
+        return "anndata_v1"

{ngio-0.3.3 → ngio-0.3.4}/src/ngio/tables/backends/_table_backends.py

@@ -7,7 +7,7 @@ from pandas import DataFrame
 from polars import DataFrame as PolarsDataFrame
 from polars import LazyFrame
 
-from ngio.tables.backends._anndata import AnnDataBackend
+from ngio.tables.backends._anndata import AnnDataBackend, AnnDataBackendV1
 from ngio.tables.backends._csv import CsvTableBackend
 from ngio.tables.backends._json import JsonTableBackend
 from ngio.tables.backends._parquet import ParquetTableBackend
@@ -213,7 +213,8 @@ class ImplementedTableBackends:
                 )
 
 
-ImplementedTableBackends().add_backend(AnnDataBackend, aliases=["anndata_v1"])
+ImplementedTableBackends().add_backend(AnnDataBackend)
+ImplementedTableBackends().add_backend(AnnDataBackendV1)
 ImplementedTableBackends().add_backend(
     JsonTableBackend, aliases=["experimental_json_v1"]
 )