ngio 0.2.8__tar.gz → 0.2.10__tar.gz

{ngio-0.2.8 → ngio-0.2.10}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: ngio
-Version: 0.2.8
+Version: 0.2.10
 Summary: Next Generation file format IO
 Project-URL: homepage, https://github.com/lorenzocerrone/ngio
 Project-URL: repository, https://github.com/lorenzocerrone/ngio

{ngio-0.2.8 → ngio-0.2.10}/src/ngio/ome_zarr_meta/ngio_specs/_axes.py

@@ -2,15 +2,12 @@
 
 from collections.abc import Collection
 from enum import Enum
-from logging import Logger
 from typing import Literal, TypeVar
 
 import numpy as np
 from pydantic import BaseModel, ConfigDict, Field
 
-from ngio.utils import NgioValidationError, NgioValueError
-
-logger = Logger(__name__)
+from ngio.utils import NgioValidationError, NgioValueError, ngio_logger
 
 T = TypeVar("T")
 
@@ -102,20 +99,20 @@ class Axis(BaseModel):
     def implicit_type_cast(self, cast_type: AxisType) -> "Axis":
         unit = self.unit
         if self.axis_type != cast_type:
-            logger.warning(
+            ngio_logger.warning(
                 f"Axis {self.on_disk_name} has type {self.axis_type}. "
                 f"Casting to {cast_type}."
             )
 
         if cast_type == AxisType.time and unit is None:
-            logger.warning(
+            ngio_logger.warning(
                 f"Time axis {self.on_disk_name} has unit {self.unit}. "
                 f"Casting to {DefaultSpaceUnit}."
             )
             unit = DefaultTimeUnit
 
         if cast_type == AxisType.space and unit is None:
-            logger.warning(
+            ngio_logger.warning(
                 f"Space axis {self.on_disk_name} has unit {unit}. "
                 f"Casting to {DefaultSpaceUnit}."
             )

{ngio-0.2.8 → ngio-0.2.10}/src/ngio/tables/v1/_roi_table.py

@@ -321,7 +321,8 @@ class MaskingRoiTableV1(_GenericRoiTableV1[MaskingRoiTableV1Meta]):
         """Create a new ROI table."""
         meta = MaskingRoiTableV1Meta()
         if reference_label is not None:
-            meta.region = RegionMeta(path=reference_label)
+            path = f"../labels/{reference_label}"
+            meta.region = RegionMeta(path=path)
         super().__init__(meta, rois)
 
     def __repr__(self) -> str: