ngio 0.2.5__tar.gz → 0.2.6__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (206) hide show
  1. {ngio-0.2.5 → ngio-0.2.6}/PKG-INFO +1 -1
  2. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/ngio_specs/_channels.py +1 -1
  3. {ngio-0.2.5 → ngio-0.2.6}/tests/unit/ome_zarr_meta/test_unit_ngio_specs.py +1 -1
  4. {ngio-0.2.5 → ngio-0.2.6}/.copier-answers.yml +0 -0
  5. {ngio-0.2.5 → ngio-0.2.6}/.gitattributes +0 -0
  6. {ngio-0.2.5 → ngio-0.2.6}/.github/ISSUE_TEMPLATE.md +0 -0
  7. {ngio-0.2.5 → ngio-0.2.6}/.github/TEST_FAIL_TEMPLATE.md +0 -0
  8. {ngio-0.2.5 → ngio-0.2.6}/.github/dependabot.yml +0 -0
  9. {ngio-0.2.5 → ngio-0.2.6}/.github/scripts/download_data.sh +0 -0
  10. {ngio-0.2.5 → ngio-0.2.6}/.github/workflows/build_docs.yml +0 -0
  11. {ngio-0.2.5 → ngio-0.2.6}/.github/workflows/ci.yml +0 -0
  12. {ngio-0.2.5 → ngio-0.2.6}/.gitignore +0 -0
  13. {ngio-0.2.5 → ngio-0.2.6}/.pre-commit-config.yaml +0 -0
  14. {ngio-0.2.5 → ngio-0.2.6}/LICENSE +0 -0
  15. {ngio-0.2.5 → ngio-0.2.6}/README.md +0 -0
  16. {ngio-0.2.5 → ngio-0.2.6}/_typos.toml +0 -0
  17. {ngio-0.2.5 → ngio-0.2.6}/docs/api/common.md +0 -0
  18. {ngio-0.2.5 → ngio-0.2.6}/docs/api/hcs.md +0 -0
  19. {ngio-0.2.5 → ngio-0.2.6}/docs/api/images.md +0 -0
  20. {ngio-0.2.5 → ngio-0.2.6}/docs/api/ngio.md +0 -0
  21. {ngio-0.2.5 → ngio-0.2.6}/docs/api/tables.md +0 -0
  22. {ngio-0.2.5 → ngio-0.2.6}/docs/api/utils.md +0 -0
  23. {ngio-0.2.5 → ngio-0.2.6}/docs/code_of_conduct.md +0 -0
  24. {ngio-0.2.5 → ngio-0.2.6}/docs/contributing.md +0 -0
  25. {ngio-0.2.5 → ngio-0.2.6}/docs/getting_started/0_quickstart.md +0 -0
  26. {ngio-0.2.5 → ngio-0.2.6}/docs/getting_started/1_ome_zarr_containers.md +0 -0
  27. {ngio-0.2.5 → ngio-0.2.6}/docs/getting_started/2_images.md +0 -0
  28. {ngio-0.2.5 → ngio-0.2.6}/docs/getting_started/3_tables.md +0 -0
  29. {ngio-0.2.5 → ngio-0.2.6}/docs/getting_started/4_masked_images.md +0 -0
  30. {ngio-0.2.5 → ngio-0.2.6}/docs/getting_started/5_hcs.md +0 -0
  31. {ngio-0.2.5 → ngio-0.2.6}/docs/index.md +0 -0
  32. {ngio-0.2.5 → ngio-0.2.6}/docs/tutorials/feature_extraction.ipynb +0 -0
  33. {ngio-0.2.5 → ngio-0.2.6}/docs/tutorials/hcs_processing.ipynb +0 -0
  34. {ngio-0.2.5 → ngio-0.2.6}/docs/tutorials/image_processing.ipynb +0 -0
  35. {ngio-0.2.5 → ngio-0.2.6}/docs/tutorials/image_segmentation.ipynb +0 -0
  36. {ngio-0.2.5 → ngio-0.2.6}/mkdocs.yml +0 -0
  37. {ngio-0.2.5 → ngio-0.2.6}/pyproject.toml +0 -0
  38. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/__init__.py +0 -0
  39. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/__init__.py +0 -0
  40. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/_array_pipe.py +0 -0
  41. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/_axes_transforms.py +0 -0
  42. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/_common_types.py +0 -0
  43. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/_dimensions.py +0 -0
  44. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/_masking_roi.py +0 -0
  45. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/_pyramid.py +0 -0
  46. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/_roi.py +0 -0
  47. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/_slicer.py +0 -0
  48. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/common/_zoom.py +0 -0
  49. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/hcs/__init__.py +0 -0
  50. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/hcs/plate.py +0 -0
  51. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/images/__init__.py +0 -0
  52. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/images/abstract_image.py +0 -0
  53. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/images/create.py +0 -0
  54. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/images/image.py +0 -0
  55. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/images/label.py +0 -0
  56. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/images/masked_image.py +0 -0
  57. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/images/ome_zarr_container.py +0 -0
  58. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/__init__.py +0 -0
  59. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/_meta_handlers.py +0 -0
  60. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/ngio_specs/__init__.py +0 -0
  61. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/ngio_specs/_axes.py +0 -0
  62. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/ngio_specs/_dataset.py +0 -0
  63. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/ngio_specs/_ngio_hcs.py +0 -0
  64. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/ngio_specs/_ngio_image.py +0 -0
  65. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/ngio_specs/_pixel_size.py +0 -0
  66. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/v04/__init__.py +0 -0
  67. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/v04/_custom_models.py +0 -0
  68. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/v04/_v04_spec_utils.py +0 -0
  69. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/__init__.py +0 -0
  70. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/_validators.py +0 -0
  71. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/backends/__init__.py +0 -0
  72. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/backends/_abstract_backend.py +0 -0
  73. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/backends/_anndata_utils.py +0 -0
  74. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/backends/_anndata_v1.py +0 -0
  75. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/backends/_csv_v1.py +0 -0
  76. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/backends/_json_v1.py +0 -0
  77. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/backends/_table_backends.py +0 -0
  78. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/backends/_utils.py +0 -0
  79. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/tables_container.py +0 -0
  80. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/v1/__init__.py +0 -0
  81. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/v1/_feature_table.py +0 -0
  82. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/v1/_generic_table.py +0 -0
  83. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/tables/v1/_roi_table.py +0 -0
  84. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/utils/__init__.py +0 -0
  85. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/utils/_datasets.py +0 -0
  86. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/utils/_errors.py +0 -0
  87. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/utils/_fractal_fsspec_store.py +0 -0
  88. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/utils/_logger.py +0 -0
  89. {ngio-0.2.5 → ngio-0.2.6}/src/ngio/utils/_zarr_utils.py +0 -0
  90. {ngio-0.2.5 → ngio-0.2.6}/tests/conftest.py +0 -0
  91. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/.zattrs +0 -0
  92. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/.zgroup +0 -0
  93. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/0/.zarray +0 -0
  94. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/1/.zarray +0 -0
  95. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/labels/.zattrs +0 -0
  96. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/labels/.zgroup +0 -0
  97. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/labels/label/.zattrs +0 -0
  98. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/labels/label/.zgroup +0 -0
  99. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/labels/label/0/.zarray +0 -0
  100. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_c1yx.zarr/labels/label/1/.zarray +0 -0
  101. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/.zattrs +0 -0
  102. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/.zgroup +0 -0
  103. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/0/.zarray +0 -0
  104. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/1/.zarray +0 -0
  105. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/labels/.zattrs +0 -0
  106. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/labels/.zgroup +0 -0
  107. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/labels/label/.zattrs +0 -0
  108. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/labels/label/.zgroup +0 -0
  109. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/labels/label/0/.zarray +0 -0
  110. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_cyx.zarr/labels/label/1/.zarray +0 -0
  111. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/.zattrs +0 -0
  112. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/.zgroup +0 -0
  113. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/0/.zarray +0 -0
  114. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/1/.zarray +0 -0
  115. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/labels/.zattrs +0 -0
  116. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/labels/.zgroup +0 -0
  117. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/labels/label/.zattrs +0 -0
  118. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/labels/label/.zgroup +0 -0
  119. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/labels/label/0/.zarray +0 -0
  120. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_czyx.zarr/labels/label/1/.zarray +0 -0
  121. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/.zattrs +0 -0
  122. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/.zgroup +0 -0
  123. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/0/.zarray +0 -0
  124. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/1/.zarray +0 -0
  125. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/labels/.zattrs +0 -0
  126. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/labels/.zgroup +0 -0
  127. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/labels/label/.zattrs +0 -0
  128. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/labels/label/.zgroup +0 -0
  129. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/labels/label/0/.zarray +0 -0
  130. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tcyx.zarr/labels/label/1/.zarray +0 -0
  131. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/.zattrs +0 -0
  132. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/.zgroup +0 -0
  133. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/0/.zarray +0 -0
  134. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/1/.zarray +0 -0
  135. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/labels/.zattrs +0 -0
  136. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/labels/.zgroup +0 -0
  137. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/labels/label/.zattrs +0 -0
  138. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/labels/label/.zgroup +0 -0
  139. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/labels/label/0/.zarray +0 -0
  140. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tczyx.zarr/labels/label/1/.zarray +0 -0
  141. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tyx.zarr/.zattrs +0 -0
  142. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tyx.zarr/.zgroup +0 -0
  143. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tyx.zarr/0/.zarray +0 -0
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  147. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_tyx.zarr/labels/label/.zattrs +0 -0
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  163. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_yx.zarr/0/.zarray +0 -0
  164. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_yx.zarr/1/.zarray +0 -0
  165. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_yx.zarr/labels/.zattrs +0 -0
  166. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_yx.zarr/labels/.zgroup +0 -0
  167. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_yx.zarr/labels/label/.zattrs +0 -0
  168. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_yx.zarr/labels/label/.zgroup +0 -0
  169. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_yx.zarr/labels/label/0/.zarray +0 -0
  170. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_yx.zarr/labels/label/1/.zarray +0 -0
  171. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_zyx.zarr/.zattrs +0 -0
  172. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_zyx.zarr/.zgroup +0 -0
  173. {ngio-0.2.5 → ngio-0.2.6}/tests/data/v04/images/test_image_zyx.zarr/0/.zarray +0 -0
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{ngio-0.2.5 → ngio-0.2.6}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ngio
3
- Version: 0.2.5
3
+ Version: 0.2.6
4
4
  Summary: Next Generation file format IO
5
5
  Project-URL: homepage, https://github.com/lorenzocerrone/ngio
6
6
  Project-URL: repository, https://github.com/lorenzocerrone/ngio
{ngio-0.2.5 → ngio-0.2.6}/src/ngio/ome_zarr_meta/ngio_specs/_channels.py RENAMED
@@ -344,7 +344,7 @@ class ChannelsMeta(BaseModel):
344
344
  _wavelength_id = _check_elements(wavelength_id, str)
345
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  _wavelength_id = _check_unique(wavelength_id)
346
346
 
347
- _colors: Collection[str | NgioColors] = ["random"] * len(labels)
347
+ _colors: Collection[str | NgioColors | None] = [None] * len(labels)
348
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  if isinstance(colors, Collection):
349
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  _colors = _check_elements(colors, str | NgioColors)
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{ngio-0.2.5 → ngio-0.2.6}/tests/unit/ome_zarr_meta/test_unit_ngio_specs.py RENAMED
@@ -282,7 +282,7 @@ def test_channels():
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  assert len(channels.channels) == 3
283
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  assert channels.channels[0].label == "DAPI"
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  assert channels.channels[0].wavelength_id == "DAPI"
285
- assert channels.channels[0].channel_visualisation.color == "00FFFF"
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+ assert channels.channels[0].channel_visualisation.color == NgioColors.dapi.value
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  channels = ChannelsMeta.default_init(labels=4)
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  assert len(channels.channels) == 4
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