neuro-sam 0.1.5__tar.gz → 0.1.6__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (98) hide show
  1. {neuro_sam-0.1.5/src/neuro_sam.egg-info → neuro_sam-0.1.6}/PKG-INFO +1 -1
  2. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/pyproject.toml +1 -1
  3. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/punet_widget.py +2 -8
  4. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/punet/punet_inference.py +1 -1
  5. {neuro_sam-0.1.5 → neuro_sam-0.1.6/src/neuro_sam.egg-info}/PKG-INFO +1 -1
  6. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/LICENSE +0 -0
  7. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/README.md +0 -0
  8. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/setup.cfg +0 -0
  9. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/__init__.py +0 -0
  10. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/__init__.py +0 -0
  11. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/algorithm/__init__.py +0 -0
  12. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/algorithm/astar.py +0 -0
  13. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/algorithm/waypointastar.py +0 -0
  14. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/algorithm/waypointastar_speedup.py +0 -0
  15. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/connected_componen.py +0 -0
  16. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/cost/__init__.py +0 -0
  17. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/cost/cost.py +0 -0
  18. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/cost/reciprocal.py +0 -0
  19. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/cost/reciprocal_transonic.py +0 -0
  20. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/heuristic/__init__.py +0 -0
  21. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/heuristic/euclidean.py +0 -0
  22. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/heuristic/heuristic.py +0 -0
  23. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/image/__init__.py +0 -0
  24. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/image/stats.py +0 -0
  25. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/input/__init__.py +0 -0
  26. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/input/inputs.py +0 -0
  27. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/node/__init__.py +0 -0
  28. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/node/bidirectional_node.py +0 -0
  29. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/node/node.py +0 -0
  30. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/visualization/__init__.py +0 -0
  31. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/visualization/flythrough.py +0 -0
  32. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/visualization/flythrough_all.py +0 -0
  33. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/visualization/tube_data.py +0 -0
  34. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/brightest_path_lib/visualization/tube_flythrough.py +0 -0
  35. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/anisotropic_scaling.py +0 -0
  36. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/color_utils.py +0 -0
  37. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/contrasting_color_system.py +0 -0
  38. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/main_widget.py +0 -0
  39. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/path_tracing_module.py +0 -0
  40. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/segmentation_model.py +0 -0
  41. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/segmentation_module.py +0 -0
  42. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/visualization_module.py +0 -0
  43. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/plugin.py +0 -0
  44. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/punet/__init__.py +0 -0
  45. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/punet/deepd3_model.py +0 -0
  46. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/punet/prob_unet_deepd3.py +0 -0
  47. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/punet/prob_unet_with_tversky.py +0 -0
  48. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/punet/run_inference.py +0 -0
  49. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/punet/unet_blocks.py +0 -0
  50. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/punet/utils.py +0 -0
  51. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam.egg-info/SOURCES.txt +0 -0
  52. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam.egg-info/dependency_links.txt +0 -0
  53. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam.egg-info/entry_points.txt +0 -0
  54. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam.egg-info/requires.txt +0 -0
  55. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam.egg-info/top_level.txt +0 -0
  56. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/__init__.py +0 -0
  57. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/automatic_mask_generator.py +0 -0
  58. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/benchmark.py +0 -0
  59. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/build_sam.py +0 -0
  60. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/sam2/sam2_hiera_b+.yaml +0 -0
  61. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/sam2/sam2_hiera_l.yaml +0 -0
  62. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/sam2/sam2_hiera_s.yaml +0 -0
  63. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/sam2/sam2_hiera_t.yaml +0 -0
  64. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/sam2.1/sam2.1_hiera_b+.yaml +0 -0
  65. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/sam2.1/sam2.1_hiera_l.yaml +0 -0
  66. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/sam2.1/sam2.1_hiera_s.yaml +0 -0
  67. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/sam2.1/sam2.1_hiera_t.yaml +0 -0
  68. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/sam2.1_training/sam2.1_hiera_b+_MOSE_finetune.yaml +0 -0
  69. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/configs/train.yaml +0 -0
  70. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/__init__.py +0 -0
  71. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/backbones/__init__.py +0 -0
  72. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/backbones/hieradet.py +0 -0
  73. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/backbones/image_encoder.py +0 -0
  74. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/backbones/utils.py +0 -0
  75. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/memory_attention.py +0 -0
  76. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/memory_encoder.py +0 -0
  77. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/position_encoding.py +0 -0
  78. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/sam/__init__.py +0 -0
  79. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/sam/mask_decoder.py +0 -0
  80. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/sam/prompt_encoder.py +0 -0
  81. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/sam/transformer.py +0 -0
  82. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/sam2_base.py +0 -0
  83. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/modeling/sam2_utils.py +0 -0
  84. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2.1_hiera_b+.yaml +0 -0
  85. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2.1_hiera_l.yaml +0 -0
  86. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2.1_hiera_s.yaml +0 -0
  87. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2.1_hiera_t.yaml +0 -0
  88. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2_hiera_b+.yaml +0 -0
  89. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2_hiera_l.yaml +0 -0
  90. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2_hiera_s.yaml +0 -0
  91. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2_hiera_t.yaml +0 -0
  92. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2_image_predictor.py +0 -0
  93. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2_video_predictor.py +0 -0
  94. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/sam2_video_predictor_legacy.py +0 -0
  95. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/utils/__init__.py +0 -0
  96. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/utils/amg.py +0 -0
  97. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/utils/misc.py +0 -0
  98. {neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/sam2/utils/transforms.py +0 -0
{neuro_sam-0.1.5/src/neuro_sam.egg-info → neuro_sam-0.1.6}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: neuro-sam
3
- Version: 0.1.5
3
+ Version: 0.1.6
4
4
  Summary: Neuro-SAM: Foundation Models for Dendrite and Dendritic Spine Segmentation
5
5
  Author-email: Nipun Arora <nipunarora8@yahoo.com>
6
6
  License: MIT License
{neuro_sam-0.1.5 → neuro_sam-0.1.6}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
4
4
 
5
5
  [project]
6
6
  name = "neuro-sam"
7
- version = "0.1.5"
7
+ version = "0.1.6"
8
8
  description = "Neuro-SAM: Foundation Models for Dendrite and Dendritic Spine Segmentation"
9
9
  readme = "README.md"
10
10
  authors = [
{neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/napari_utils/punet_widget.py RENAMED
@@ -15,14 +15,8 @@ import napari
15
15
  from napari.qt.threading import thread_worker
16
16
 
17
17
  # Import the model class
18
- # Assuming running from root, so punet is a package
19
- try:
20
- from neuro_sam.punet.punet_inference import run_inference_volume
21
- except ImportError:
22
- # Fallback if running from a different context, try to append path
23
- import sys
24
- sys.path.append(os.path.join(os.path.dirname(__file__), '..', 'punet'))
25
- from neuro_sam.punet.punet_inference import run_inference_volume
18
+ # Assumes installed package structure
19
+ from neuro_sam.punet.punet_inference import run_inference_volume
26
20
 
27
21
 
28
22
 
{neuro_sam-0.1.5 → neuro_sam-0.1.6}/src/neuro_sam/punet/punet_inference.py RENAMED
@@ -7,7 +7,7 @@ import torch
7
7
  import tifffile as tiff
8
8
  from tqdm import tqdm
9
9
 
10
- from prob_unet_with_tversky import ProbabilisticUnetDualLatent
10
+ from .prob_unet_with_tversky import ProbabilisticUnetDualLatent
11
11
 
12
12
 
13
13
  def pad_to_multiple(img: np.ndarray, multiple: int = 32):
{neuro_sam-0.1.5 → neuro_sam-0.1.6/src/neuro_sam.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: neuro-sam
3
- Version: 0.1.5
3
+ Version: 0.1.6
4
4
  Summary: Neuro-SAM: Foundation Models for Dendrite and Dendritic Spine Segmentation
5
5
  Author-email: Nipun Arora <nipunarora8@yahoo.com>
6
6
  License: MIT License
{neuro_sam-0.1.5 → neuro_sam-0.1.6}/LICENSE RENAMED
File without changes
{neuro_sam-0.1.5 → neuro_sam-0.1.6}/README.md RENAMED
File without changes
{neuro_sam-0.1.5 → neuro_sam-0.1.6}/setup.cfg RENAMED
File without changes