neuro-sam 0.1.4__tar.gz → 0.1.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (98) hide show
  1. {neuro_sam-0.1.4/src/neuro_sam.egg-info → neuro_sam-0.1.5}/PKG-INFO +1 -1
  2. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/pyproject.toml +1 -1
  3. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/punet_widget.py +1 -1
  4. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/prob_unet_deepd3.py +3 -3
  5. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/prob_unet_with_tversky.py +2 -2
  6. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/unet_blocks.py +1 -1
  7. {neuro_sam-0.1.4 → neuro_sam-0.1.5/src/neuro_sam.egg-info}/PKG-INFO +1 -1
  8. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/LICENSE +0 -0
  9. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/README.md +0 -0
  10. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/setup.cfg +0 -0
  11. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/__init__.py +0 -0
  12. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/__init__.py +0 -0
  13. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/algorithm/__init__.py +0 -0
  14. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/algorithm/astar.py +0 -0
  15. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/algorithm/waypointastar.py +0 -0
  16. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/algorithm/waypointastar_speedup.py +0 -0
  17. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/connected_componen.py +0 -0
  18. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/cost/__init__.py +0 -0
  19. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/cost/cost.py +0 -0
  20. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/cost/reciprocal.py +0 -0
  21. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/cost/reciprocal_transonic.py +0 -0
  22. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/heuristic/__init__.py +0 -0
  23. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/heuristic/euclidean.py +0 -0
  24. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/heuristic/heuristic.py +0 -0
  25. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/image/__init__.py +0 -0
  26. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/image/stats.py +0 -0
  27. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/input/__init__.py +0 -0
  28. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/input/inputs.py +0 -0
  29. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/node/__init__.py +0 -0
  30. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/node/bidirectional_node.py +0 -0
  31. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/node/node.py +0 -0
  32. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/visualization/__init__.py +0 -0
  33. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/visualization/flythrough.py +0 -0
  34. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/visualization/flythrough_all.py +0 -0
  35. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/visualization/tube_data.py +0 -0
  36. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/brightest_path_lib/visualization/tube_flythrough.py +0 -0
  37. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/anisotropic_scaling.py +0 -0
  38. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/color_utils.py +0 -0
  39. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/contrasting_color_system.py +0 -0
  40. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/main_widget.py +0 -0
  41. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/path_tracing_module.py +0 -0
  42. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/segmentation_model.py +0 -0
  43. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/segmentation_module.py +0 -0
  44. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/visualization_module.py +0 -0
  45. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/plugin.py +0 -0
  46. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/__init__.py +0 -0
  47. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/deepd3_model.py +0 -0
  48. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/punet_inference.py +0 -0
  49. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/run_inference.py +0 -0
  50. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/utils.py +0 -0
  51. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam.egg-info/SOURCES.txt +0 -0
  52. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam.egg-info/dependency_links.txt +0 -0
  53. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam.egg-info/entry_points.txt +0 -0
  54. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam.egg-info/requires.txt +0 -0
  55. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam.egg-info/top_level.txt +0 -0
  56. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/__init__.py +0 -0
  57. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/automatic_mask_generator.py +0 -0
  58. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/benchmark.py +0 -0
  59. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/build_sam.py +0 -0
  60. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/sam2/sam2_hiera_b+.yaml +0 -0
  61. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/sam2/sam2_hiera_l.yaml +0 -0
  62. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/sam2/sam2_hiera_s.yaml +0 -0
  63. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/sam2/sam2_hiera_t.yaml +0 -0
  64. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/sam2.1/sam2.1_hiera_b+.yaml +0 -0
  65. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/sam2.1/sam2.1_hiera_l.yaml +0 -0
  66. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/sam2.1/sam2.1_hiera_s.yaml +0 -0
  67. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/sam2.1/sam2.1_hiera_t.yaml +0 -0
  68. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/sam2.1_training/sam2.1_hiera_b+_MOSE_finetune.yaml +0 -0
  69. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/configs/train.yaml +0 -0
  70. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/__init__.py +0 -0
  71. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/backbones/__init__.py +0 -0
  72. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/backbones/hieradet.py +0 -0
  73. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/backbones/image_encoder.py +0 -0
  74. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/backbones/utils.py +0 -0
  75. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/memory_attention.py +0 -0
  76. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/memory_encoder.py +0 -0
  77. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/position_encoding.py +0 -0
  78. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/sam/__init__.py +0 -0
  79. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/sam/mask_decoder.py +0 -0
  80. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/sam/prompt_encoder.py +0 -0
  81. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/sam/transformer.py +0 -0
  82. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/sam2_base.py +0 -0
  83. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/modeling/sam2_utils.py +0 -0
  84. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2.1_hiera_b+.yaml +0 -0
  85. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2.1_hiera_l.yaml +0 -0
  86. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2.1_hiera_s.yaml +0 -0
  87. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2.1_hiera_t.yaml +0 -0
  88. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2_hiera_b+.yaml +0 -0
  89. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2_hiera_l.yaml +0 -0
  90. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2_hiera_s.yaml +0 -0
  91. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2_hiera_t.yaml +0 -0
  92. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2_image_predictor.py +0 -0
  93. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2_video_predictor.py +0 -0
  94. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/sam2_video_predictor_legacy.py +0 -0
  95. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/utils/__init__.py +0 -0
  96. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/utils/amg.py +0 -0
  97. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/utils/misc.py +0 -0
  98. {neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/sam2/utils/transforms.py +0 -0
{neuro_sam-0.1.4/src/neuro_sam.egg-info → neuro_sam-0.1.5}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: neuro-sam
3
- Version: 0.1.4
3
+ Version: 0.1.5
4
4
  Summary: Neuro-SAM: Foundation Models for Dendrite and Dendritic Spine Segmentation
5
5
  Author-email: Nipun Arora <nipunarora8@yahoo.com>
6
6
  License: MIT License
{neuro_sam-0.1.4 → neuro_sam-0.1.5}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
4
4
 
5
5
  [project]
6
6
  name = "neuro-sam"
7
- version = "0.1.4"
7
+ version = "0.1.5"
8
8
  description = "Neuro-SAM: Foundation Models for Dendrite and Dendritic Spine Segmentation"
9
9
  readme = "README.md"
10
10
  authors = [
{neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/napari_utils/punet_widget.py RENAMED
@@ -22,7 +22,7 @@ except ImportError:
22
22
  # Fallback if running from a different context, try to append path
23
23
  import sys
24
24
  sys.path.append(os.path.join(os.path.dirname(__file__), '..', 'punet'))
25
- from neuro_sam.punet_inference import run_inference_volume
25
+ from neuro_sam.punet.punet_inference import run_inference_volume
26
26
 
27
27
 
28
28
 
{neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/prob_unet_deepd3.py RENAMED
@@ -10,9 +10,9 @@ import torch.nn.functional as F
10
10
  from torch.distributions import Normal, Independent, kl
11
11
  import numpy as np
12
12
 
13
- from deepd3_model import DeepD3Model
14
- from unet_blocks import *
15
- from utils import init_weights, init_weights_orthogonal_normal, l2_regularisation
13
+ from .deepd3_model import DeepD3Model
14
+ from .unet_blocks import *
15
+ from .utils import init_weights, init_weights_orthogonal_normal, l2_regularisation
16
16
 
17
17
  device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
18
18
 
{neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/prob_unet_with_tversky.py RENAMED
@@ -12,8 +12,8 @@ import torch
12
12
  import torch.nn as nn
13
13
  import torch.nn.functional as F
14
14
  from torch.distributions import kl
15
- from deepd3_model import DeepD3Model
16
- from prob_unet_deepd3 import AxisAlignedConvGaussian, Fcomb
15
+ from .deepd3_model import DeepD3Model
16
+ from .prob_unet_deepd3 import AxisAlignedConvGaussian, Fcomb
17
17
 
18
18
 
19
19
  class TverskyLoss(nn.Module):
{neuro_sam-0.1.4 → neuro_sam-0.1.5}/src/neuro_sam/punet/unet_blocks.py RENAMED
@@ -2,7 +2,7 @@ import torch
2
2
  import torch.nn as nn
3
3
  from torch.autograd import Variable
4
4
  import numpy as np
5
- from utils import init_weights
5
+ from .utils import init_weights
6
6
 
7
7
  class DownConvBlock(nn.Module):
8
8
  """
{neuro_sam-0.1.4 → neuro_sam-0.1.5/src/neuro_sam.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: neuro-sam
3
- Version: 0.1.4
3
+ Version: 0.1.5
4
4
  Summary: Neuro-SAM: Foundation Models for Dendrite and Dendritic Spine Segmentation
5
5
  Author-email: Nipun Arora <nipunarora8@yahoo.com>
6
6
  License: MIT License
{neuro_sam-0.1.4 → neuro_sam-0.1.5}/LICENSE RENAMED
File without changes
{neuro_sam-0.1.4 → neuro_sam-0.1.5}/README.md RENAMED
File without changes
{neuro_sam-0.1.4 → neuro_sam-0.1.5}/setup.cfg RENAMED
File without changes