neuro-cortex-memory 3.7.2__tar.gz → 3.7.3__tar.gz

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Files changed (575) hide show
  1. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude-plugin/marketplace.json +2 -2
  2. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude-plugin/plugin.json +1 -1
  3. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/PKG-INFO +1 -1
  4. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/seed_project_stages.py +20 -9
  5. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/shared/project_ids.py +6 -2
  6. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/pyproject.toml +1 -1
  7. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/architect.md +0 -0
  8. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/code-reviewer.md +0 -0
  9. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/data-scientist.md +0 -0
  10. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/dba.md +0 -0
  11. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/devops-engineer.md +0 -0
  12. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/engineer.md +0 -0
  13. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/experiment-runner.md +0 -0
  14. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/frontend-engineer.md +0 -0
  15. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/latex-engineer.md +0 -0
  16. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/mlops.md +0 -0
  17. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/orchestrator.md +0 -0
  18. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/paper-writer.md +0 -0
  19. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/professor.md +0 -0
  20. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/research-scientist.md +0 -0
  21. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/reviewer-academic.md +0 -0
  22. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/security-auditor.md +0 -0
  23. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/test-engineer.md +0 -0
  24. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.claude/agents/ux-designer.md +0 -0
  25. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.dockerignore +0 -0
  26. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.github/workflows/ci.yml +0 -0
  27. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.github/workflows/release.yml +0 -0
  28. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.gitignore +0 -0
  29. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.mcp.json +0 -0
  30. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/.npmignore +0 -0
  31. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/CLAUDE.md +0 -0
  32. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/LICENSE +0 -0
  33. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/README.md +0 -0
  34. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/_pipeline/run_test.py +0 -0
  35. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/beam/ablation.py +0 -0
  36. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/beam/ablation_results.json +0 -0
  37. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/beam/data.py +0 -0
  38. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/beam/run_benchmark.py +0 -0
  39. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/episodic/run_benchmark.py +0 -0
  40. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/evermembench/run_benchmark.py +0 -0
  41. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/lib/__init__.py +0 -0
  42. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/lib/bench_db.py +0 -0
  43. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/lib/fusion.py +0 -0
  44. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/lib/reporting.py +0 -0
  45. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/lib/retriever.py +0 -0
  46. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/locomo/.gitignore +0 -0
  47. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/locomo/data.py +0 -0
  48. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/locomo/run_benchmark.py +0 -0
  49. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/locomo/run_benchmark_agents.py +0 -0
  50. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/longmemeval/retrieval_config.json +0 -0
  51. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/longmemeval/retrieval_config.yaml +0 -0
  52. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/longmemeval/run_benchmark.py +0 -0
  53. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/memoryagentbench/run_benchmark.py +0 -0
  54. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/quick_test.sh +0 -0
  55. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/benchmarks/spell_alteration/run_benchmark.py +0 -0
  56. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/commands/methodology.md +0 -0
  57. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docker/Dockerfile +0 -0
  58. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docker/entrypoint.sh +0 -0
  59. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docker/run.sh +0 -0
  60. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/001-zero-dependencies.md +0 -0
  61. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/002-clean-architecture-layers.md +0 -0
  62. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/003-felder-silverman-model.md +0 -0
  63. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/004-jaccard-over-cosine-similarity.md +0 -0
  64. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/005-agglomerative-over-kmeans-clustering.md +0 -0
  65. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/006-ema-for-incremental-updates.md +0 -0
  66. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/007-head-tail-jsonl-reading.md +0 -0
  67. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/008-handler-as-composition-root.md +0 -0
  68. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/009-node-test-over-jest.md +0 -0
  69. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/010-sparse-dictionary-learning.md +0 -0
  70. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/011-persona-vector-design.md +0 -0
  71. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/012-python-migration.md +0 -0
  72. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/adr/013-zikkaron-thermodynamic-memory.md +0 -0
  73. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/api-reference.md +0 -0
  74. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/architecture.md +0 -0
  75. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/data-flow.md +0 -0
  76. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/diagram-architecture.svg +0 -0
  77. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/diagram-big-picture.svg +0 -0
  78. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/diagram-lifecycle.svg +0 -0
  79. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/diagram-mechanisms.svg +0 -0
  80. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/diagram-profiling.svg +0 -0
  81. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/diagram-read-path.svg +0 -0
  82. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/diagram-retrieval-pipeline.svg +0 -0
  83. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/diagram-team-memory.svg +0 -0
  84. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/diagram-write-path.svg +0 -0
  85. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/neural-graph-board.png +0 -0
  86. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/neural-graph-detail.png +0 -0
  87. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/neural-graph-diff.png +0 -0
  88. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/neural-graph-discussion.png +0 -0
  89. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/neural-graph-overview.png +0 -0
  90. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/neural-graph-pipeline.png +0 -0
  91. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/safeskill-report.json +0 -0
  92. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/docs/testing-guide.md +0 -0
  93. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/__init__.py +0 -0
  94. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/__main__.py +0 -0
  95. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/__init__.py +0 -0
  96. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/ablation.py +0 -0
  97. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/ablation_report.py +0 -0
  98. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/abstention_gate.py +0 -0
  99. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/ast_extractors.py +0 -0
  100. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/ast_extractors_extra.py +0 -0
  101. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/ast_parser.py +0 -0
  102. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/attribution_tracer.py +0 -0
  103. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/behavioral_crosscoder.py +0 -0
  104. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/blindspot_detector.py +0 -0
  105. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/blindspot_patterns.py +0 -0
  106. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/bridge_finder.py +0 -0
  107. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/cascade.py +0 -0
  108. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/cascade_advancement.py +0 -0
  109. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/cascade_stages.py +0 -0
  110. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/causal_graph.py +0 -0
  111. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/codebase_extractors.py +0 -0
  112. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/codebase_graph.py +0 -0
  113. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/codebase_parser.py +0 -0
  114. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/codebase_type_resolver.py +0 -0
  115. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/cognitive_map.py +0 -0
  116. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/compression.py +0 -0
  117. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/concept_vocabulary.py +0 -0
  118. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/consolidation_engine.py +0 -0
  119. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/context_generator.py +0 -0
  120. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/coupled_neuromodulation.py +0 -0
  121. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/curation.py +0 -0
  122. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/decay_cycle.py +0 -0
  123. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/dendritic_clusters.py +0 -0
  124. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/dendritic_computation.py +0 -0
  125. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/domain_detector.py +0 -0
  126. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/dual_store_cls.py +0 -0
  127. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/dual_store_cls_abstraction.py +0 -0
  128. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/emergence_metrics.py +0 -0
  129. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/emergence_tracker.py +0 -0
  130. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/emotional_tagging.py +0 -0
  131. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/engram.py +0 -0
  132. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/enrichment.py +0 -0
  133. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/fractal.py +0 -0
  134. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/fractal_clustering.py +0 -0
  135. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/global_detector.py +0 -0
  136. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/graph_builder.py +0 -0
  137. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/graph_builder_dedup.py +0 -0
  138. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/graph_builder_discussions.py +0 -0
  139. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/graph_builder_edges.py +0 -0
  140. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/graph_builder_memory.py +0 -0
  141. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/graph_builder_nodes.py +0 -0
  142. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/graph_quality_scorer.py +0 -0
  143. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/hdc_encoder.py +0 -0
  144. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/hierarchical_predictive_coding.py +0 -0
  145. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/homeostatic_health.py +0 -0
  146. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/homeostatic_plasticity.py +0 -0
  147. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/hopfield.py +0 -0
  148. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/interference.py +0 -0
  149. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/interference_detection.py +0 -0
  150. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/knowledge_graph.py +0 -0
  151. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/memory_decomposer.py +0 -0
  152. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/memory_ingest.py +0 -0
  153. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/memory_rules.py +0 -0
  154. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/metacognition.py +0 -0
  155. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/metacognition_analysis.py +0 -0
  156. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/microglial_pruning.py +0 -0
  157. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/mmr_diversity.py +0 -0
  158. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/narrative.py +0 -0
  159. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/neurogenesis.py +0 -0
  160. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/neuromodulation_channels.py +0 -0
  161. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/oscillatory_clock.py +0 -0
  162. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/oscillatory_phases.py +0 -0
  163. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/pattern_extractor.py +0 -0
  164. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/pattern_separation.py +0 -0
  165. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/core/persona_vector.py +0 -0
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  237. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/consolidation/plasticity.py +0 -0
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  241. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/create_trigger.py +0 -0
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  246. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/forget.py +0 -0
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  248. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/get_methodology_graph.py +0 -0
  249. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/get_project_story.py +0 -0
  250. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/get_rules.py +0 -0
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  252. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/list_domains.py +0 -0
  253. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/memory_stats.py +0 -0
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  272. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/recall.py +0 -0
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  276. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/remember.py +0 -0
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  280. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/seed_project.py +0 -0
  281. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/seed_project_constants.py +0 -0
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  283. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/validate_memory.py +0 -0
  284. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/wiki_adr.py +0 -0
  285. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/handlers/wiki_link.py +0 -0
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  290. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/hooks/__init__.py +0 -0
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  292. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/hooks/auto_recall.py +0 -0
  293. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/hooks/compaction_checkpoint.py +0 -0
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  296. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/hooks/session_lifecycle.py +0 -0
  297. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/hooks/session_start.py +0 -0
  298. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/hooks/wiki_distill.py +0 -0
  299. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/mcp_server/infrastructure/__init__.py +0 -0
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  485. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/handlers/test_run_pipeline.py +0 -0
  486. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/hooks/__init__.py +0 -0
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  488. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/__init__.py +0 -0
  489. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_brain_index_store.py +0 -0
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  491. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_embedding_engine.py +0 -0
  492. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_file_io.py +0 -0
  493. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_mcp_client.py +0 -0
  494. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_mcp_client_pool.py +0 -0
  495. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_memory_store.py +0 -0
  496. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_pg_schema_recall.py +0 -0
  497. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_profile_store.py +0 -0
  498. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_scanner.py +0 -0
  499. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_session_store.py +0 -0
  500. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/infrastructure/test_wiki_store.py +0 -0
  501. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/integration/__init__.py +0 -0
  502. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/integration/test_cold_start.py +0 -0
  503. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/integration/test_memory_lifecycle.py +0 -0
  504. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/server/__init__.py +0 -0
  505. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/server/test_http_server.py +0 -0
  506. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/__init__.py +0 -0
  507. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/test_categorizer.py +0 -0
  508. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/test_hash.py +0 -0
  509. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/test_linear_algebra.py +0 -0
  510. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/test_project_ids.py +0 -0
  511. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/test_similarity.py +0 -0
  512. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/test_sparse.py +0 -0
  513. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/test_text.py +0 -0
  514. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/test_types.py +0 -0
  515. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/shared/test_yaml_parser.py +0 -0
  516. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/test_main.py +0 -0
  517. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/validation/__init__.py +0 -0
  518. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/tests_py/validation/test_schemas.py +0 -0
  519. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/DESIGN.md +0 -0
  520. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/analytics.js +0 -0
  521. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/camera.js +0 -0
  522. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/categories.js +0 -0
  523. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/config.js +0 -0
  524. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/controls.js +0 -0
  525. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/edge_fx.js +0 -0
  526. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/edges.js +0 -0
  527. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/effects.js +0 -0
  528. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/graph.js +0 -0
  529. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/helix.js +0 -0
  530. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/interaction.js +0 -0
  531. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/nodes.js +0 -0
  532. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/polling.js +0 -0
  533. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/raycast.js +0 -0
  534. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/scene.js +0 -0
  535. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/state.js +0 -0
  536. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/stats.js +0 -0
  537. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/js/timeline.js +0 -0
  538. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/panels.css +0 -0
  539. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/dashboard/theme.css +0 -0
  540. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/methodology/css/components.css +0 -0
  541. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/methodology/css/theme.css +0 -0
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  543. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/methodology/js/data.js +0 -0
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  545. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/methodology/js/filters.js +0 -0
  546. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/methodology/js/graph.js +0 -0
  547. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/methodology/js/labels.js +0 -0
  548. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/methodology/js/main.js +0 -0
  549. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/methodology/js/nodes.js +0 -0
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  553. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/methodology-viz.html +0 -0
  554. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/unified/detail.css +0 -0
  555. {neuro_cortex_memory-3.7.2 → neuro_cortex_memory-3.7.3}/ui/unified/js/config.js +0 -0
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@@ -6,14 +6,14 @@
6
6
  },
7
7
  "metadata": {
8
8
  "description": "Persistent memory and cognitive profiling plugins for Claude Code",
9
- "version": "3.7.2"
9
+ "version": "3.7.3"
10
10
  },
11
11
  "plugins": [
12
12
  {
13
13
  "name": "cortex",
14
14
  "source": "./",
15
15
  "description": "Persistent memory and cognitive profiling for Claude Code — thermodynamic memory with heat/decay, intent-aware retrieval, biological plasticity, codebase intelligence, and cognitive profiling. 33 MCP tools. Docker image available with PostgreSQL + pgvector pre-configured.",
16
- "version": "3.7.2",
16
+ "version": "3.7.3",
17
17
  "author": {
18
18
  "name": "Clement Deust",
19
19
  "email": "admin@ai-architect.tools"
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "cortex",
3
3
  "description": "Persistent memory for Claude Code — remembers across sessions automatically. Install and forget. Scientific retrieval backed by 41 published papers.",
4
- "version": "3.7.2",
4
+ "version": "3.7.3",
5
5
  "author": {
6
6
  "name": "Clement Deust",
7
7
  "email": "admin@ai-architect.tools"
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: neuro-cortex-memory
3
- Version: 3.7.2
3
+ Version: 3.7.3
4
4
  Summary: Scientifically-grounded memory system based on computational neuroscience research
5
5
  Project-URL: Homepage, https://github.com/cdeust/Cortex
6
6
  Project-URL: Repository, https://github.com/cdeust/Cortex
@@ -8,6 +8,7 @@ Constants live in seed_project_constants.py.
8
8
 
9
9
  from __future__ import annotations
10
10
 
11
+ import os
11
12
  from pathlib import Path
12
13
 
13
14
  from mcp_server.handlers.seed_project_constants import (
@@ -46,12 +47,26 @@ def _safe_read(path: Path, max_bytes: int = 65536) -> str:
46
47
  return ""
47
48
 
48
49
 
50
+ def _walk_pruned(root: Path):
51
+ """Walk ``root`` skipping IGNORE_DIRS and not following symlinks/junctions.
52
+
53
+ Uses ``os.walk(followlinks=False)`` with in-place pruning of ``dirnames``
54
+ so that ignored directories (node_modules, .venv, __pycache__, etc.) are
55
+ never descended into. This is the canonical cross-platform idiom and is
56
+ required on Windows to avoid traversing NTFS junctions and reparse points.
57
+ Yields ``Path`` objects for every file under the pruned tree.
58
+ """
59
+ for dirpath, dirnames, filenames in os.walk(root, followlinks=False):
60
+ dirnames[:] = [d for d in dirnames if d not in IGNORE_DIRS]
61
+ dp = Path(dirpath)
62
+ for name in filenames:
63
+ yield dp / name
64
+
65
+
49
66
  def _detect_languages(root: Path) -> list[str]:
50
67
  """Detect primary programming languages from file extensions."""
51
68
  ext_counts: dict[str, int] = {}
52
- for p in root.rglob("*"):
53
- if any(d in p.parts for d in IGNORE_DIRS):
54
- continue
69
+ for p in _walk_pruned(root):
55
70
  lang = EXT_MAP.get(p.suffix.lower())
56
71
  if lang:
57
72
  ext_counts[lang] = ext_counts.get(lang, 0) + 1
@@ -159,12 +174,8 @@ def stage_docs(root: Path, max_bytes: int) -> list[dict]:
159
174
  def stage_entry_points(root: Path, max_bytes: int) -> list[dict]:
160
175
  """Find and read entry point files."""
161
176
  discoveries = []
162
- for p in root.rglob("*"):
163
- if any(d in p.parts for d in IGNORE_DIRS):
164
- continue
165
- # Skip symlinks and anything inside dist-info/egg-info
166
- if p.is_symlink():
167
- continue
177
+ for p in _walk_pruned(root):
178
+ # Skip anything inside dist-info/egg-info build metadata
168
179
  if any(part.endswith((".dist-info", ".egg-info")) for part in p.parts):
169
180
  continue
170
181
  if p.name in ENTRY_POINT_NAMES and p.is_file():
@@ -17,11 +17,15 @@ _LEADING_TRAILING_DASH_RE = re.compile(r"^-|-$")
17
17
  def cwd_to_project_id(cwd: str | None) -> str | None:
18
18
  """Convert a working directory path to a Claude project ID.
19
19
 
20
- /Users/dev/cortex -> -Users-dev-cortex
20
+ POSIX: /Users/dev/cortex -> -Users-dev-cortex
21
+ Windows: C:\\Users\\dev\\cortex -> C--Users-dev-cortex
22
+
23
+ Backslashes are normalized to forward slashes first so Windows paths
24
+ produce the same dash-separated project ID shape as POSIX paths.
21
25
  """
22
26
  if not cwd:
23
27
  return None
24
- return cwd.replace("/", "-")
28
+ return cwd.replace("\\", "/").replace("/", "-")
25
29
 
26
30
 
27
31
  def project_id_to_label(project_id: str | None) -> str:
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
4
4
 
5
5
  [project]
6
6
  name = "neuro-cortex-memory"
7
- version = "3.7.2"
7
+ version = "3.7.3"
8
8
  description = "Scientifically-grounded memory system based on computational neuroscience research"
9
9
  readme = "README.md"
10
10
  license = "MIT"