neuro-cortex-memory 3.7.0__tar.gz → 3.7.2__tar.gz

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Files changed (575) hide show
  1. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude-plugin/marketplace.json +2 -2
  2. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude-plugin/plugin.json +1 -1
  3. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.gitignore +3 -0
  4. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/PKG-INFO +1 -1
  5. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/infrastructure/memory_store.py +18 -5
  6. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/infrastructure/pg_schema.py +10 -2
  7. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/pyproject.toml +1 -1
  8. neuro_cortex_memory-3.7.2/tests_py/infrastructure/test_pg_schema_recall.py +49 -0
  9. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/architect.md +0 -0
  10. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/code-reviewer.md +0 -0
  11. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/data-scientist.md +0 -0
  12. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/dba.md +0 -0
  13. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/devops-engineer.md +0 -0
  14. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/engineer.md +0 -0
  15. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/experiment-runner.md +0 -0
  16. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/frontend-engineer.md +0 -0
  17. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/latex-engineer.md +0 -0
  18. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/mlops.md +0 -0
  19. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/orchestrator.md +0 -0
  20. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/paper-writer.md +0 -0
  21. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/professor.md +0 -0
  22. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/research-scientist.md +0 -0
  23. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/reviewer-academic.md +0 -0
  24. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/security-auditor.md +0 -0
  25. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/test-engineer.md +0 -0
  26. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.claude/agents/ux-designer.md +0 -0
  27. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.dockerignore +0 -0
  28. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.github/workflows/ci.yml +0 -0
  29. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.github/workflows/release.yml +0 -0
  30. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.mcp.json +0 -0
  31. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/.npmignore +0 -0
  32. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/CLAUDE.md +0 -0
  33. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/LICENSE +0 -0
  34. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/README.md +0 -0
  35. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/_pipeline/run_test.py +0 -0
  36. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/beam/ablation.py +0 -0
  37. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/beam/ablation_results.json +0 -0
  38. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/beam/data.py +0 -0
  39. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/beam/run_benchmark.py +0 -0
  40. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/episodic/run_benchmark.py +0 -0
  41. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/evermembench/run_benchmark.py +0 -0
  42. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/lib/__init__.py +0 -0
  43. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/lib/bench_db.py +0 -0
  44. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/lib/fusion.py +0 -0
  45. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/lib/reporting.py +0 -0
  46. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/lib/retriever.py +0 -0
  47. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/locomo/.gitignore +0 -0
  48. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/locomo/data.py +0 -0
  49. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/locomo/run_benchmark.py +0 -0
  50. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/locomo/run_benchmark_agents.py +0 -0
  51. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/longmemeval/retrieval_config.json +0 -0
  52. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/longmemeval/retrieval_config.yaml +0 -0
  53. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/longmemeval/run_benchmark.py +0 -0
  54. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/memoryagentbench/run_benchmark.py +0 -0
  55. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/quick_test.sh +0 -0
  56. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/benchmarks/spell_alteration/run_benchmark.py +0 -0
  57. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/commands/methodology.md +0 -0
  58. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docker/Dockerfile +0 -0
  59. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docker/entrypoint.sh +0 -0
  60. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docker/run.sh +0 -0
  61. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/001-zero-dependencies.md +0 -0
  62. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/002-clean-architecture-layers.md +0 -0
  63. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/003-felder-silverman-model.md +0 -0
  64. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/004-jaccard-over-cosine-similarity.md +0 -0
  65. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/005-agglomerative-over-kmeans-clustering.md +0 -0
  66. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/006-ema-for-incremental-updates.md +0 -0
  67. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/007-head-tail-jsonl-reading.md +0 -0
  68. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/008-handler-as-composition-root.md +0 -0
  69. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/009-node-test-over-jest.md +0 -0
  70. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/010-sparse-dictionary-learning.md +0 -0
  71. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/011-persona-vector-design.md +0 -0
  72. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/012-python-migration.md +0 -0
  73. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/adr/013-zikkaron-thermodynamic-memory.md +0 -0
  74. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/api-reference.md +0 -0
  75. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/architecture.md +0 -0
  76. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/data-flow.md +0 -0
  77. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/diagram-architecture.svg +0 -0
  78. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/diagram-big-picture.svg +0 -0
  79. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/diagram-lifecycle.svg +0 -0
  80. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/diagram-mechanisms.svg +0 -0
  81. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/diagram-profiling.svg +0 -0
  82. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/diagram-read-path.svg +0 -0
  83. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/diagram-retrieval-pipeline.svg +0 -0
  84. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/diagram-team-memory.svg +0 -0
  85. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/diagram-write-path.svg +0 -0
  86. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/neural-graph-board.png +0 -0
  87. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/neural-graph-detail.png +0 -0
  88. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/neural-graph-diff.png +0 -0
  89. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/neural-graph-discussion.png +0 -0
  90. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/neural-graph-overview.png +0 -0
  91. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/neural-graph-pipeline.png +0 -0
  92. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/safeskill-report.json +0 -0
  93. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/docs/testing-guide.md +0 -0
  94. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/__init__.py +0 -0
  95. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/__main__.py +0 -0
  96. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/__init__.py +0 -0
  97. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/ablation.py +0 -0
  98. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/ablation_report.py +0 -0
  99. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/abstention_gate.py +0 -0
  100. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/ast_extractors.py +0 -0
  101. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/ast_extractors_extra.py +0 -0
  102. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/ast_parser.py +0 -0
  103. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/attribution_tracer.py +0 -0
  104. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/behavioral_crosscoder.py +0 -0
  105. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/blindspot_detector.py +0 -0
  106. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/blindspot_patterns.py +0 -0
  107. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/bridge_finder.py +0 -0
  108. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/cascade.py +0 -0
  109. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/cascade_advancement.py +0 -0
  110. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/cascade_stages.py +0 -0
  111. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/causal_graph.py +0 -0
  112. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/codebase_extractors.py +0 -0
  113. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/codebase_graph.py +0 -0
  114. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/codebase_parser.py +0 -0
  115. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/codebase_type_resolver.py +0 -0
  116. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/cognitive_map.py +0 -0
  117. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/compression.py +0 -0
  118. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/concept_vocabulary.py +0 -0
  119. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/consolidation_engine.py +0 -0
  120. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/context_generator.py +0 -0
  121. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/coupled_neuromodulation.py +0 -0
  122. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/curation.py +0 -0
  123. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/decay_cycle.py +0 -0
  124. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/dendritic_clusters.py +0 -0
  125. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/dendritic_computation.py +0 -0
  126. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/domain_detector.py +0 -0
  127. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/dual_store_cls.py +0 -0
  128. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/dual_store_cls_abstraction.py +0 -0
  129. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/emergence_metrics.py +0 -0
  130. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/emergence_tracker.py +0 -0
  131. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/emotional_tagging.py +0 -0
  132. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/engram.py +0 -0
  133. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/enrichment.py +0 -0
  134. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/fractal.py +0 -0
  135. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/fractal_clustering.py +0 -0
  136. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/global_detector.py +0 -0
  137. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/graph_builder.py +0 -0
  138. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/graph_builder_dedup.py +0 -0
  139. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/graph_builder_discussions.py +0 -0
  140. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/graph_builder_edges.py +0 -0
  141. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/graph_builder_memory.py +0 -0
  142. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/graph_builder_nodes.py +0 -0
  143. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/graph_quality_scorer.py +0 -0
  144. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/hdc_encoder.py +0 -0
  145. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/hierarchical_predictive_coding.py +0 -0
  146. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/homeostatic_health.py +0 -0
  147. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/homeostatic_plasticity.py +0 -0
  148. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/hopfield.py +0 -0
  149. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/interference.py +0 -0
  150. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/interference_detection.py +0 -0
  151. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/knowledge_graph.py +0 -0
  152. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/memory_decomposer.py +0 -0
  153. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/memory_ingest.py +0 -0
  154. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/memory_rules.py +0 -0
  155. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/metacognition.py +0 -0
  156. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/metacognition_analysis.py +0 -0
  157. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/microglial_pruning.py +0 -0
  158. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/mmr_diversity.py +0 -0
  159. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/narrative.py +0 -0
  160. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/neurogenesis.py +0 -0
  161. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/neuromodulation_channels.py +0 -0
  162. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/oscillatory_clock.py +0 -0
  163. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/oscillatory_phases.py +0 -0
  164. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/pattern_extractor.py +0 -0
  165. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/pattern_separation.py +0 -0
  166. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/mcp_server/core/persona_vector.py +0 -0
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  486. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/handlers/test_run_pipeline.py +0 -0
  487. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/hooks/__init__.py +0 -0
  488. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/hooks/test_session_lifecycle.py +0 -0
  489. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/__init__.py +0 -0
  490. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_brain_index_store.py +0 -0
  491. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_config.py +0 -0
  492. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_embedding_engine.py +0 -0
  493. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_file_io.py +0 -0
  494. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_mcp_client.py +0 -0
  495. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_mcp_client_pool.py +0 -0
  496. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_memory_store.py +0 -0
  497. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_profile_store.py +0 -0
  498. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_scanner.py +0 -0
  499. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_session_store.py +0 -0
  500. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/infrastructure/test_wiki_store.py +0 -0
  501. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/integration/__init__.py +0 -0
  502. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/integration/test_cold_start.py +0 -0
  503. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/integration/test_memory_lifecycle.py +0 -0
  504. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/server/__init__.py +0 -0
  505. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/server/test_http_server.py +0 -0
  506. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/__init__.py +0 -0
  507. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/test_categorizer.py +0 -0
  508. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/test_hash.py +0 -0
  509. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/test_linear_algebra.py +0 -0
  510. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/test_project_ids.py +0 -0
  511. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/test_similarity.py +0 -0
  512. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/test_sparse.py +0 -0
  513. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/test_text.py +0 -0
  514. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/test_types.py +0 -0
  515. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/shared/test_yaml_parser.py +0 -0
  516. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/test_main.py +0 -0
  517. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/validation/__init__.py +0 -0
  518. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/tests_py/validation/test_schemas.py +0 -0
  519. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/DESIGN.md +0 -0
  520. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/analytics.js +0 -0
  521. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/camera.js +0 -0
  522. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/categories.js +0 -0
  523. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/config.js +0 -0
  524. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/controls.js +0 -0
  525. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/edge_fx.js +0 -0
  526. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/edges.js +0 -0
  527. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/effects.js +0 -0
  528. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/graph.js +0 -0
  529. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/helix.js +0 -0
  530. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/interaction.js +0 -0
  531. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/nodes.js +0 -0
  532. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/polling.js +0 -0
  533. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/raycast.js +0 -0
  534. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/scene.js +0 -0
  535. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/state.js +0 -0
  536. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/stats.js +0 -0
  537. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/js/timeline.js +0 -0
  538. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/panels.css +0 -0
  539. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/dashboard/theme.css +0 -0
  540. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/css/components.css +0 -0
  541. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/css/theme.css +0 -0
  542. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/config.js +0 -0
  543. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/data.js +0 -0
  544. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/detail.js +0 -0
  545. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/filters.js +0 -0
  546. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/graph.js +0 -0
  547. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/labels.js +0 -0
  548. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/main.js +0 -0
  549. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/nodes.js +0 -0
  550. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/state.js +0 -0
  551. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/stats.js +0 -0
  552. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology/js/tooltip.js +0 -0
  553. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/methodology-viz.html +0 -0
  554. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/unified/detail.css +0 -0
  555. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/unified/js/config.js +0 -0
  556. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/unified/js/controls.js +0 -0
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  558. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/unified/js/detail_format.js +0 -0
  559. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/unified/js/detail_panel.js +0 -0
  560. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/unified/js/detail_tools.js +0 -0
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  567. {neuro_cortex_memory-3.7.0 → neuro_cortex_memory-3.7.2}/ui/unified/js/sankey.js +0 -0
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@@ -6,14 +6,14 @@
6
6
  },
7
7
  "metadata": {
8
8
  "description": "Persistent memory and cognitive profiling plugins for Claude Code",
9
- "version": "3.5.1"
9
+ "version": "3.7.2"
10
10
  },
11
11
  "plugins": [
12
12
  {
13
13
  "name": "cortex",
14
14
  "source": "./",
15
15
  "description": "Persistent memory and cognitive profiling for Claude Code — thermodynamic memory with heat/decay, intent-aware retrieval, biological plasticity, codebase intelligence, and cognitive profiling. 33 MCP tools. Docker image available with PostgreSQL + pgvector pre-configured.",
16
- "version": "3.5.1",
16
+ "version": "3.7.2",
17
17
  "author": {
18
18
  "name": "Clement Deust",
19
19
  "email": "admin@ai-architect.tools"
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "cortex",
3
3
  "description": "Persistent memory for Claude Code — remembers across sessions automatically. Install and forget. Scientific retrieval backed by 41 published papers.",
4
- "version": "3.5.1",
4
+ "version": "3.7.2",
5
5
  "author": {
6
6
  "name": "Clement Deust",
7
7
  "email": "admin@ai-architect.tools"
@@ -23,3 +23,6 @@ benchmarks/longmemeval/longmemeval_s.json
23
23
  benchmarks/longmemeval/longmemeval_oracle.json
24
24
  benchmarks/spell_alteration/*.pdf
25
25
  *.pdf
26
+
27
+ # Runtime telemetry
28
+ traces/
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: neuro-cortex-memory
3
- Version: 3.7.0
3
+ Version: 3.7.2
4
4
  Summary: Scientifically-grounded memory system based on computational neuroscience research
5
5
  Project-URL: Homepage, https://github.com/cdeust/Cortex
6
6
  Project-URL: Repository, https://github.com/cdeust/Cortex
@@ -14,15 +14,22 @@ logger = logging.getLogger(__name__)
14
14
 
15
15
  def _try_pg(database_url: str):
16
16
  """Try connecting to PostgreSQL. Returns PgMemoryStore or None."""
17
+ store, _ = _try_pg_verbose(database_url)
18
+ return store
19
+
20
+
21
+ def _try_pg_verbose(database_url: str):
22
+ """Try connecting to PostgreSQL. Returns (store, error_message)."""
17
23
  try:
18
24
  import psycopg # noqa: F401
19
25
 
20
26
  from mcp_server.infrastructure.pg_store import PgMemoryStore
21
27
 
22
- return PgMemoryStore(database_url=database_url)
28
+ return PgMemoryStore(database_url=database_url), None
23
29
  except Exception as exc:
24
- logger.warning("PostgreSQL unavailable (%s), falling back to SQLite", exc)
25
- return None
30
+ msg = f"{type(exc).__name__}: {exc}"
31
+ logger.warning("PostgreSQL unavailable (%s), falling back to SQLite", msg)
32
+ return None, msg
26
33
 
27
34
 
28
35
  class MemoryStore:
@@ -57,12 +64,18 @@ class MemoryStore:
57
64
  return _make_sqlite(db_path or settings.SQLITE_FALLBACK_PATH, embedding_dim)
58
65
 
59
66
  if backend == "postgresql":
60
- store = _try_pg(url) if url else None
67
+ if url:
68
+ store, err = _try_pg_verbose(url)
69
+ else:
70
+ store, err = None, "DATABASE_URL not set"
61
71
  if store is not None:
62
72
  return store
63
73
  raise RuntimeError(
64
- "PostgreSQL connection failed. Cortex requires PostgreSQL in CLI mode.\n"
74
+ f"PostgreSQL connection failed (url={url or '<unset>'}): {err}\n"
75
+ "Cortex requires PostgreSQL in CLI mode.\n"
65
76
  "Run: bash setup.sh to configure PostgreSQL.\n"
77
+ "If DATABASE_URL is set, verify it points to a reachable Postgres instance "
78
+ "(host/port/credentials/database exists).\n"
66
79
  "Or set CORTEX_RUNTIME=cowork to allow SQLite fallback."
67
80
  )
68
81
 
@@ -232,6 +232,13 @@ CREATE INDEX IF NOT EXISTS idx_memories_agent_context
232
232
  # ── PL/pgSQL: recall_memories ─────────────────────────────────────────────
233
233
 
234
234
  RECALL_MEMORIES_FN = """
235
+ -- Migration: dropping the prior signature is required because adding a
236
+ -- column to RETURNS TABLE is rejected by CREATE OR REPLACE in Postgres.
237
+ -- The DROP is idempotent and only triggers when the old shape exists.
238
+ DROP FUNCTION IF EXISTS recall_memories(
239
+ TEXT, vector, TEXT, TEXT, TEXT, TEXT, REAL, INT, INT,
240
+ REAL, REAL, REAL, REAL, REAL, BOOLEAN
241
+ );
235
242
  CREATE OR REPLACE FUNCTION recall_memories(
236
243
  p_query_text TEXT,
237
244
  p_query_emb vector(384),
@@ -259,7 +266,8 @@ CREATE OR REPLACE FUNCTION recall_memories(
259
266
  tags JSONB,
260
267
  importance REAL,
261
268
  surprise_score REAL,
262
- emotional_valence REAL
269
+ emotional_valence REAL,
270
+ source TEXT
263
271
  ) AS $$
264
272
  DECLARE
265
273
  v_pool INT := p_max_results * 10;
@@ -425,7 +433,7 @@ BEGIN
425
433
  SELECT tb.id, m.content, tb.final_score::REAL, m.heat,
426
434
  m.domain, m.created_at, m.store_type,
427
435
  m.tags, m.importance, m.surprise_score,
428
- m.emotional_valence
436
+ m.emotional_valence, m.source
429
437
  FROM tag_boosted tb
430
438
  JOIN memories m ON m.id = tb.id
431
439
  ORDER BY tb.final_score DESC
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
4
4
 
5
5
  [project]
6
6
  name = "neuro-cortex-memory"
7
- version = "3.7.0"
7
+ version = "3.7.2"
8
8
  description = "Scientifically-grounded memory system based on computational neuroscience research"
9
9
  readme = "README.md"
10
10
  license = "MIT"
@@ -0,0 +1,49 @@
1
+ """Schema-shape regression tests for the recall_memories PL/pgSQL function.
2
+
3
+ These run without a live PostgreSQL connection — they simply assert that
4
+ the DDL string declares the columns the recall handler depends on. The
5
+ ``source`` column is required so callers can round-trip a recalled
6
+ memory back to its canonical wiki page (``wiki://...``).
7
+ """
8
+
9
+ from __future__ import annotations
10
+
11
+ from mcp_server.infrastructure.pg_schema import RECALL_MEMORIES_FN
12
+
13
+
14
+ def test_recall_memories_returns_source_column() -> None:
15
+ """source must be in RETURNS TABLE and selected from memories."""
16
+ assert "source TEXT" in RECALL_MEMORIES_FN, (
17
+ "recall_memories() RETURNS TABLE must declare source TEXT"
18
+ )
19
+ assert "m.source" in RECALL_MEMORIES_FN, (
20
+ "recall_memories() final SELECT must include m.source"
21
+ )
22
+
23
+
24
+ def test_recall_memories_drop_guard_present() -> None:
25
+ """The function must DROP the prior signature so column changes apply."""
26
+ assert "DROP FUNCTION IF EXISTS recall_memories" in RECALL_MEMORIES_FN, (
27
+ "RECALL_MEMORIES_FN must DROP its prior signature before CREATE — "
28
+ "Postgres rejects column-list changes via CREATE OR REPLACE alone."
29
+ )
30
+
31
+
32
+ def test_recall_memories_returns_known_columns() -> None:
33
+ """Backstop: every column the recall handler reads must be declared."""
34
+ required = (
35
+ "memory_id",
36
+ "content",
37
+ "score",
38
+ "heat",
39
+ "domain",
40
+ "created_at",
41
+ "store_type",
42
+ "tags",
43
+ "importance",
44
+ "surprise_score",
45
+ "emotional_valence",
46
+ "source",
47
+ )
48
+ for col in required:
49
+ assert col in RECALL_MEMORIES_FN, f"missing column in RETURNS TABLE: {col}"