nettracer3d 1.1.3__tar.gz → 1.1.9__tar.gz

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  1. {nettracer3d-1.1.3/src/nettracer3d.egg-info → nettracer3d-1.1.9}/PKG-INFO +9 -3
  2. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/README.md +9 -3
  3. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/pyproject.toml +1 -1
  4. nettracer3d-1.1.9/src/nettracer3d/filaments.py +1074 -0
  5. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/neighborhoods.py +102 -70
  6. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/nettracer.py +200 -33
  7. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/nettracer_gui.py +1452 -433
  8. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/network_draw.py +9 -3
  9. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/node_draw.py +5 -1
  10. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/proximity.py +123 -2
  11. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/smart_dilate.py +36 -0
  12. nettracer3d-1.1.9/src/nettracer3d/tutorial.py +2853 -0
  13. {nettracer3d-1.1.3 → nettracer3d-1.1.9/src/nettracer3d.egg-info}/PKG-INFO +9 -3
  14. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d.egg-info/SOURCES.txt +2 -0
  15. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/LICENSE +0 -0
  16. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/setup.cfg +0 -0
  17. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/__init__.py +0 -0
  18. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/cellpose_manager.py +0 -0
  19. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/community_extractor.py +0 -0
  20. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/excelotron.py +0 -0
  21. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/modularity.py +0 -0
  22. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/morphology.py +0 -0
  23. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/network_analysis.py +0 -0
  24. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/painting.py +0 -0
  25. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/run.py +0 -0
  26. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/segmenter.py +0 -0
  27. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/segmenter_GPU.py +0 -0
  28. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/simple_network.py +0 -0
  29. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d/stats.py +0 -0
  30. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d.egg-info/dependency_links.txt +0 -0
  31. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d.egg-info/entry_points.txt +0 -0
  32. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d.egg-info/requires.txt +0 -0
  33. {nettracer3d-1.1.3 → nettracer3d-1.1.9}/src/nettracer3d.egg-info/top_level.txt +0 -0
{nettracer3d-1.1.3/src/nettracer3d.egg-info → nettracer3d-1.1.9}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nettracer3d
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- Version: 1.1.3
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+ Version: 1.1.9
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  Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
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  Author-email: Liam McLaughlin <liamm@wustl.edu>
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  Project-URL: Documentation, https://nettracer3d.readthedocs.io/en/latest/
@@ -110,6 +110,12 @@ McLaughlin, L., Zhang, B., Sharma, S. et al. Three dimensional multiscalar neuro
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  NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
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- -- Version 1.1.3 Updates --
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+ -- Version 1.1.9 Updates --
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- * Some minor text adjustments
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+ * Fixed saving of Boolean True/False arrays.
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+ * Fixed branch functions not working correctly when a temporary downsample was being applied
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+ * Added the 'filaments tracer' which can be used to improve vessel based segmentations
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+ * Removed options for 'cubic' downsampling during processing as this option actually made outputs worse.
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+ * Rearranged the 'Analyze -> Stats' menu
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{nettracer3d-1.1.3 → nettracer3d-1.1.9}/README.md RENAMED
@@ -65,6 +65,12 @@ McLaughlin, L., Zhang, B., Sharma, S. et al. Three dimensional multiscalar neuro
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  NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
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- -- Version 1.1.3 Updates --
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-
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- * Some minor text adjustments
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+ -- Version 1.1.9 Updates --
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+
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+ * Fixed saving of Boolean True/False arrays.
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+ * Fixed branch functions not working correctly when a temporary downsample was being applied
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+ * Added the 'filaments tracer' which can be used to improve vessel based segmentations
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+ * Removed options for 'cubic' downsampling during processing as this option actually made outputs worse.
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+ * Rearranged the 'Analyze -> Stats' menu
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{nettracer3d-1.1.3 → nettracer3d-1.1.9}/pyproject.toml RENAMED
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  [project]
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  name = "nettracer3d"
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- version = "1.1.3"
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+ version = "1.1.9"
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  authors = [
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  { name="Liam McLaughlin", email="liamm@wustl.edu" },
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  ]