nettracer3d 0.8.7__tar.gz → 0.8.8__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of nettracer3d might be problematic. Click here for more details.
- {nettracer3d-0.8.7/src/nettracer3d.egg-info → nettracer3d-0.8.8}/PKG-INFO +2 -2
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/README.md +1 -1
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/pyproject.toml +1 -1
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/nettracer_gui.py +32 -32
- {nettracer3d-0.8.7 → nettracer3d-0.8.8/src/nettracer3d.egg-info}/PKG-INFO +2 -2
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/LICENSE +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/setup.cfg +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/__init__.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/cellpose_manager.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/community_extractor.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/excelotron.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/modularity.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/morphology.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/neighborhoods.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/nettracer.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/network_analysis.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/network_draw.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/node_draw.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/painting.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/proximity.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/run.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/segmenter.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/segmenter_GPU.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/simple_network.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d/smart_dilate.py +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d.egg-info/SOURCES.txt +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d.egg-info/dependency_links.txt +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d.egg-info/entry_points.txt +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d.egg-info/requires.txt +0 -0
- {nettracer3d-0.8.7 → nettracer3d-0.8.8}/src/nettracer3d.egg-info/top_level.txt +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: nettracer3d
|
|
3
|
-
Version: 0.8.
|
|
3
|
+
Version: 0.8.8
|
|
4
4
|
Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
|
|
5
5
|
Author-email: Liam McLaughlin <liamm@wustl.edu>
|
|
6
6
|
Project-URL: Documentation, https://nettracer3d.readthedocs.io/en/latest/
|
|
@@ -110,6 +110,6 @@ McLaughlin, L., Zhang, B., Sharma, S. et al. Three dimensional multiscalar neuro
|
|
|
110
110
|
|
|
111
111
|
NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
|
|
112
112
|
|
|
113
|
-
-- Version 0.8.
|
|
113
|
+
-- Version 0.8.8 Updates --
|
|
114
114
|
|
|
115
115
|
* See Documentation Once Updated
|
|
@@ -65,6 +65,6 @@ McLaughlin, L., Zhang, B., Sharma, S. et al. Three dimensional multiscalar neuro
|
|
|
65
65
|
|
|
66
66
|
NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
|
|
67
67
|
|
|
68
|
-
-- Version 0.8.
|
|
68
|
+
-- Version 0.8.8 Updates --
|
|
69
69
|
|
|
70
70
|
* See Documentation Once Updated
|
|
@@ -2180,8 +2180,10 @@ class ImageViewerWindow(QMainWindow):
|
|
|
2180
2180
|
self.pm.finish_current_virtual_operation()
|
|
2181
2181
|
# Now convert to real data
|
|
2182
2182
|
self.pm.convert_virtual_strokes_to_data()
|
|
2183
|
-
self.
|
|
2184
|
-
|
|
2183
|
+
current_xlim = self.ax.get_xlim()
|
|
2184
|
+
current_ylim = self.ax.get_ylim()
|
|
2185
|
+
self.update_display(preserve_zoom=(current_xlim, current_ylim))
|
|
2186
|
+
if self.pan_mode:
|
|
2185
2187
|
current_xlim = self.ax.get_xlim()
|
|
2186
2188
|
current_ylim = self.ax.get_ylim()
|
|
2187
2189
|
self.update_display(preserve_zoom=(current_xlim, current_ylim))
|
|
@@ -2198,6 +2200,7 @@ class ImageViewerWindow(QMainWindow):
|
|
|
2198
2200
|
self.pan_mode = self.pan_button.isChecked()
|
|
2199
2201
|
if self.pan_mode:
|
|
2200
2202
|
|
|
2203
|
+
|
|
2201
2204
|
self.zoom_button.setChecked(False)
|
|
2202
2205
|
self.pen_button.setChecked(False)
|
|
2203
2206
|
self.zoom_mode = False
|
|
@@ -2213,14 +2216,34 @@ class ImageViewerWindow(QMainWindow):
|
|
|
2213
2216
|
self.pm.finish_current_virtual_operation()
|
|
2214
2217
|
# Now convert to real data
|
|
2215
2218
|
self.pm.convert_virtual_strokes_to_data()
|
|
2216
|
-
self.update_display()
|
|
2217
|
-
if self.machine_window is not None:
|
|
2218
|
-
self.machine_window.silence_button()
|
|
2219
|
-
self.canvas.setCursor(Qt.CursorShape.OpenHandCursor)
|
|
2220
|
-
if self.brush_mode:
|
|
2221
2219
|
current_xlim = self.ax.get_xlim()
|
|
2222
2220
|
current_ylim = self.ax.get_ylim()
|
|
2223
2221
|
self.update_display(preserve_zoom=(current_xlim, current_ylim))
|
|
2222
|
+
if self.machine_window is not None:
|
|
2223
|
+
self.machine_window.silence_button()
|
|
2224
|
+
self.canvas.setCursor(Qt.CursorShape.OpenHandCursor)
|
|
2225
|
+
|
|
2226
|
+
if self.pan_background_image is None:
|
|
2227
|
+
|
|
2228
|
+
if self.machine_window is not None:
|
|
2229
|
+
if self.machine_window.segmentation_worker is not None:
|
|
2230
|
+
if not self.machine_window.segmentation_worker._paused:
|
|
2231
|
+
self.resume = True
|
|
2232
|
+
self.machine_window.segmentation_worker.pause()
|
|
2233
|
+
|
|
2234
|
+
# Store current channel visibility state
|
|
2235
|
+
self.pre_pan_channel_state = self.channel_visible.copy()
|
|
2236
|
+
|
|
2237
|
+
# Create static background from currently visible channels
|
|
2238
|
+
self.create_pan_background()
|
|
2239
|
+
|
|
2240
|
+
# Hide all channels and show only the background
|
|
2241
|
+
self.channel_visible = [False] * 4
|
|
2242
|
+
self.is_pan_preview = True
|
|
2243
|
+
|
|
2244
|
+
# Update display to show only background
|
|
2245
|
+
self.update_display_pan_mode()
|
|
2246
|
+
|
|
2224
2247
|
else:
|
|
2225
2248
|
current_xlim = self.ax.get_xlim()
|
|
2226
2249
|
current_ylim = self.ax.get_ylim()
|
|
@@ -2266,7 +2289,6 @@ class ImageViewerWindow(QMainWindow):
|
|
|
2266
2289
|
self.pm.finish_current_virtual_operation()
|
|
2267
2290
|
# Now convert to real data
|
|
2268
2291
|
self.pm.convert_virtual_strokes_to_data()
|
|
2269
|
-
self.update_display()
|
|
2270
2292
|
# Get current zoom and do display update
|
|
2271
2293
|
current_xlim = self.ax.get_xlim()
|
|
2272
2294
|
current_ylim = self.ax.get_ylim()
|
|
@@ -2520,29 +2542,7 @@ class ImageViewerWindow(QMainWindow):
|
|
|
2520
2542
|
|
|
2521
2543
|
self.panning = True
|
|
2522
2544
|
self.pan_start = (event.xdata, event.ydata)
|
|
2523
|
-
|
|
2524
|
-
if self.pan_background_image is None:
|
|
2525
|
-
|
|
2526
|
-
if self.machine_window is not None:
|
|
2527
|
-
if self.machine_window.segmentation_worker is not None:
|
|
2528
|
-
if not self.machine_window.segmentation_worker._paused:
|
|
2529
|
-
self.resume = True
|
|
2530
|
-
self.machine_window.segmentation_worker.pause()
|
|
2531
|
-
|
|
2532
|
-
# Store current channel visibility state
|
|
2533
|
-
self.pre_pan_channel_state = self.channel_visible.copy()
|
|
2534
|
-
|
|
2535
|
-
# Create static background from currently visible channels
|
|
2536
|
-
self.create_pan_background()
|
|
2537
|
-
|
|
2538
|
-
# Hide all channels and show only the background
|
|
2539
|
-
self.channel_visible = [False] * 4
|
|
2540
|
-
self.is_pan_preview = True
|
|
2541
|
-
|
|
2542
|
-
# Update display to show only background
|
|
2543
|
-
self.update_display_pan_mode()
|
|
2544
|
-
else:
|
|
2545
|
-
self.canvas.setCursor(Qt.CursorShape.ClosedHandCursor)
|
|
2545
|
+
self.canvas.setCursor(Qt.CursorShape.ClosedHandCursor)
|
|
2546
2546
|
|
|
2547
2547
|
|
|
2548
2548
|
elif self.brush_mode:
|
|
@@ -2985,7 +2985,7 @@ class ImageViewerWindow(QMainWindow):
|
|
|
2985
2985
|
if z1 == z2 == self.current_slice:
|
|
2986
2986
|
self.ax.plot([x1, x2], [y1, y2], 'r--', alpha=0.5)
|
|
2987
2987
|
|
|
2988
|
-
self.canvas.setCursor(Qt.CursorShape.ClosedHandCursor)
|
|
2988
|
+
#self.canvas.setCursor(Qt.CursorShape.ClosedHandCursor)
|
|
2989
2989
|
|
|
2990
2990
|
self.canvas.draw_idle()
|
|
2991
2991
|
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: nettracer3d
|
|
3
|
-
Version: 0.8.
|
|
3
|
+
Version: 0.8.8
|
|
4
4
|
Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
|
|
5
5
|
Author-email: Liam McLaughlin <liamm@wustl.edu>
|
|
6
6
|
Project-URL: Documentation, https://nettracer3d.readthedocs.io/en/latest/
|
|
@@ -110,6 +110,6 @@ McLaughlin, L., Zhang, B., Sharma, S. et al. Three dimensional multiscalar neuro
|
|
|
110
110
|
|
|
111
111
|
NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
|
|
112
112
|
|
|
113
|
-
-- Version 0.8.
|
|
113
|
+
-- Version 0.8.8 Updates --
|
|
114
114
|
|
|
115
115
|
* See Documentation Once Updated
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|