nettracer3d 0.8.0__tar.gz → 0.8.1__tar.gz

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  1. {nettracer3d-0.8.0/src/nettracer3d.egg-info → nettracer3d-0.8.1}/PKG-INFO +5 -8
  2. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/README.md +5 -8
  3. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/pyproject.toml +1 -1
  4. nettracer3d-0.8.1/src/nettracer3d/neighborhoods.py +691 -0
  5. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/nettracer.py +120 -10
  6. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/nettracer_gui.py +276 -15
  7. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/node_draw.py +22 -12
  8. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/proximity.py +63 -0
  9. {nettracer3d-0.8.0 → nettracer3d-0.8.1/src/nettracer3d.egg-info}/PKG-INFO +5 -8
  10. nettracer3d-0.8.0/src/nettracer3d/neighborhoods.py +0 -354
  11. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/LICENSE +0 -0
  12. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/setup.cfg +0 -0
  13. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/__init__.py +0 -0
  14. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/community_extractor.py +0 -0
  15. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/excelotron.py +0 -0
  16. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/modularity.py +0 -0
  17. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/morphology.py +0 -0
  18. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/network_analysis.py +0 -0
  19. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/network_draw.py +0 -0
  20. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/run.py +0 -0
  21. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/segmenter.py +0 -0
  22. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/segmenter_GPU.py +0 -0
  23. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/simple_network.py +0 -0
  24. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d/smart_dilate.py +0 -0
  25. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d.egg-info/SOURCES.txt +0 -0
  26. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d.egg-info/dependency_links.txt +0 -0
  27. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d.egg-info/entry_points.txt +0 -0
  28. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d.egg-info/requires.txt +0 -0
  29. {nettracer3d-0.8.0 → nettracer3d-0.8.1}/src/nettracer3d.egg-info/top_level.txt +0 -0
{nettracer3d-0.8.0/src/nettracer3d.egg-info → nettracer3d-0.8.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: nettracer3d
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- Version: 0.8.0
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+ Version: 0.8.1
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  Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
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  Author-email: Liam McLaughlin <liamm@wustl.edu>
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  Project-URL: Documentation, https://nettracer3d.readthedocs.io/en/latest/
@@ -73,11 +73,8 @@ NetTracer3D is free to use/fork for academic/nonprofit use so long as citation i
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  NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
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- -- Version 0.8.0 Updates --
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+ -- Version 0.8.1 Updates --
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- * Added ability to threshold nodes by degree.
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- * Improved image viewer window performance.
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- * Bug fixes and a few optimizations.
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- * Added ability to 'merge node identities' which just uses the nodes image as a reference for collecting 'identity' information from a group of other images - ie can use with cell nuclei (DAPI) to see what markers from the same imaging session overlap.
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- * Added ability to search for specific nodes directly in the nodes image with 'shift + f' or right click.
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-
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+ * Added nearest neighbor evaluation function (Analysis -> Stats -> Avg Nearest Neighbor)
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+ * Added heatmap outputs for node degrees (Analysis -> Data/Overlays -> Get Degree Information).
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+ * Bug fixes and misc improvements.
{nettracer3d-0.8.0 → nettracer3d-0.8.1}/README.md RENAMED
@@ -34,11 +34,8 @@ NetTracer3D is free to use/fork for academic/nonprofit use so long as citation i
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  NetTracer3D was developed by Liam McLaughlin while working under Dr. Sanjay Jain at Washington University School of Medicine.
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- -- Version 0.8.0 Updates --
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-
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- * Added ability to threshold nodes by degree.
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- * Improved image viewer window performance.
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- * Bug fixes and a few optimizations.
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- * Added ability to 'merge node identities' which just uses the nodes image as a reference for collecting 'identity' information from a group of other images - ie can use with cell nuclei (DAPI) to see what markers from the same imaging session overlap.
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- * Added ability to search for specific nodes directly in the nodes image with 'shift + f' or right click.
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-
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+ -- Version 0.8.1 Updates --
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+
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+ * Added nearest neighbor evaluation function (Analysis -> Stats -> Avg Nearest Neighbor)
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+ * Added heatmap outputs for node degrees (Analysis -> Data/Overlays -> Get Degree Information).
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+ * Bug fixes and misc improvements.
{nettracer3d-0.8.0 → nettracer3d-0.8.1}/pyproject.toml RENAMED
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  [project]
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  name = "nettracer3d"
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- version = "0.8.0"
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+ version = "0.8.1"
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  authors = [
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  { name="Liam McLaughlin", email="liamm@wustl.edu" },
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  ]