nettracer3d 0.4.5__tar.gz → 0.4.6__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (27) hide show
  1. {nettracer3d-0.4.5/src/nettracer3d.egg-info → nettracer3d-0.4.6}/PKG-INFO +1 -14
  2. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/pyproject.toml +4 -18
  3. {nettracer3d-0.4.5 → nettracer3d-0.4.6/src/nettracer3d.egg-info}/PKG-INFO +1 -14
  4. nettracer3d-0.4.6/src/nettracer3d.egg-info/requires.txt +24 -0
  5. nettracer3d-0.4.5/src/nettracer3d.egg-info/requires.txt +0 -44
  6. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/LICENSE +0 -0
  7. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/README.md +0 -0
  8. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/setup.cfg +0 -0
  9. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/__init__.py +0 -0
  10. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/community_extractor.py +0 -0
  11. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/hub_getter.py +0 -0
  12. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/modularity.py +0 -0
  13. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/morphology.py +0 -0
  14. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/nettracer.py +0 -0
  15. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/nettracer_gui.py +0 -0
  16. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/network_analysis.py +0 -0
  17. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/network_draw.py +0 -0
  18. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/node_draw.py +0 -0
  19. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/proximity.py +0 -0
  20. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/run.py +0 -0
  21. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/segmenter.py +0 -0
  22. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/simple_network.py +0 -0
  23. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d/smart_dilate.py +0 -0
  24. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d.egg-info/SOURCES.txt +0 -0
  25. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d.egg-info/dependency_links.txt +0 -0
  26. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d.egg-info/entry_points.txt +0 -0
  27. {nettracer3d-0.4.5 → nettracer3d-0.4.6}/src/nettracer3d.egg-info/top_level.txt +0 -0
{nettracer3d-0.4.5/src/nettracer3d.egg-info → nettracer3d-0.4.6}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: nettracer3d
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- Version: 0.4.5
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+ Version: 0.4.6
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  Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
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  Author-email: Liam McLaughlin <boom2449@gmail.com>
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  Project-URL: User_Manual, https://drive.google.com/drive/folders/1fTkz3n4LN9_VxKRKC8lVQSlrz_wq0bVn?usp=drive_link
@@ -28,23 +28,10 @@ Requires-Dist: PyQt6
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  Requires-Dist: scikit-learn
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  Provides-Extra: cuda11
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  Requires-Dist: cupy-cuda11x; extra == "cuda11"
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- Requires-Dist: torch==2.2.0+cu118; extra == "cuda11"
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- Requires-Dist: torchvision==0.17.0+cu118; extra == "cuda11"
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- Requires-Dist: torchaudio==2.2.0+cu118; extra == "cuda11"
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  Provides-Extra: cuda12
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  Requires-Dist: cupy-cuda12x; extra == "cuda12"
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- Requires-Dist: torch==2.2.0+cu121; extra == "cuda12"
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- Requires-Dist: torchvision==0.17.0+cu121; extra == "cuda12"
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- Requires-Dist: torchaudio==2.2.0+cu121; extra == "cuda12"
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  Provides-Extra: cupy
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  Requires-Dist: cupy; extra == "cupy"
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- Requires-Dist: torch; extra == "cupy"
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- Requires-Dist: torchvision; extra == "cupy"
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- Requires-Dist: torchaudio; extra == "cupy"
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- Provides-Extra: gpu
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- Requires-Dist: cupy-cuda11x; (platform_system == "Linux" and platform_machine == "x86_64") and extra == "gpu"
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- Requires-Dist: cupy-cuda12x; platform_system == "Windows" and extra == "gpu"
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- Requires-Dist: cupy; platform_system == "Darwin" and extra == "gpu"
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  NetTracer3D is a python package developed for both 2D and 3D analysis of microscopic images in the .tif file format. It supports generation of 3D networks showing the relationships between objects (or nodes) in three dimensional space, either based on their own proximity or connectivity via connecting objects such as nerves or blood vessels. In addition to these functionalities are several advanced 3D data processing algorithms, such as labeling of branched structures or abstraction of branched structures into networks. Note that nettracer3d uses segmented data, which can be segmented from other softwares such as ImageJ and imported into NetTracer3D, although it does offer its own segmentation via intensity and volumetric thresholding, or random forest machine learning segmentation. NetTracer3D currently has a fully functional GUI. To use the GUI, after installing the nettracer3d package via pip, enter the command 'nettracer3d' in your command prompt:
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{nettracer3d-0.4.5 → nettracer3d-0.4.6}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [project]
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  name = "nettracer3d"
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- version = "0.4.5"
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+ version = "0.4.6"
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  authors = [
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  { name="Liam McLaughlin", email="boom2449@gmail.com" },
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  ]
@@ -33,27 +33,13 @@ classifiers = [
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  [project.optional-dependencies]
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  CUDA11 = [
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- "cupy-cuda11x",
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- "torch==2.2.0+cu118",
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- "torchvision==0.17.0+cu118",
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- "torchaudio==2.2.0+cu118"
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+ "cupy-cuda11x"
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  ]
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  CUDA12 = [
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- "cupy-cuda12x",
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- "torch==2.2.0+cu121",
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- "torchvision==0.17.0+cu121",
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- "torchaudio==2.2.0+cu121"
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+ "cupy-cuda12x"
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  ]
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  cupy = [
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- "cupy",
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- "torch", # Will get CPU version by default
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- "torchvision",
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- "torchaudio"
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- ]
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- GPU = [ # Meta-dependency that user can choose based on their CUDA version
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- "cupy-cuda11x ; platform_system=='Linux' and platform_machine=='x86_64'",
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- "cupy-cuda12x ; platform_system=='Windows'",
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- "cupy ; platform_system=='Darwin'"
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+ "cupy"
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  ]
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  [project.scripts]
{nettracer3d-0.4.5 → nettracer3d-0.4.6/src/nettracer3d.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
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2
  Name: nettracer3d
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- Version: 0.4.5
3
+ Version: 0.4.6
4
4
  Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
5
5
  Author-email: Liam McLaughlin <boom2449@gmail.com>
6
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  Project-URL: User_Manual, https://drive.google.com/drive/folders/1fTkz3n4LN9_VxKRKC8lVQSlrz_wq0bVn?usp=drive_link
@@ -28,23 +28,10 @@ Requires-Dist: PyQt6
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  Requires-Dist: scikit-learn
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  Provides-Extra: cuda11
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  Requires-Dist: cupy-cuda11x; extra == "cuda11"
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- Requires-Dist: torch==2.2.0+cu118; extra == "cuda11"
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- Requires-Dist: torchvision==0.17.0+cu118; extra == "cuda11"
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- Requires-Dist: torchaudio==2.2.0+cu118; extra == "cuda11"
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  Provides-Extra: cuda12
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  Requires-Dist: cupy-cuda12x; extra == "cuda12"
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- Requires-Dist: torch==2.2.0+cu121; extra == "cuda12"
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- Requires-Dist: torchvision==0.17.0+cu121; extra == "cuda12"
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- Requires-Dist: torchaudio==2.2.0+cu121; extra == "cuda12"
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  Provides-Extra: cupy
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  Requires-Dist: cupy; extra == "cupy"
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- Requires-Dist: torch; extra == "cupy"
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- Requires-Dist: torchvision; extra == "cupy"
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- Requires-Dist: torchaudio; extra == "cupy"
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- Provides-Extra: gpu
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- Requires-Dist: cupy-cuda11x; (platform_system == "Linux" and platform_machine == "x86_64") and extra == "gpu"
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- Requires-Dist: cupy-cuda12x; platform_system == "Windows" and extra == "gpu"
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- Requires-Dist: cupy; platform_system == "Darwin" and extra == "gpu"
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35
 
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  NetTracer3D is a python package developed for both 2D and 3D analysis of microscopic images in the .tif file format. It supports generation of 3D networks showing the relationships between objects (or nodes) in three dimensional space, either based on their own proximity or connectivity via connecting objects such as nerves or blood vessels. In addition to these functionalities are several advanced 3D data processing algorithms, such as labeling of branched structures or abstraction of branched structures into networks. Note that nettracer3d uses segmented data, which can be segmented from other softwares such as ImageJ and imported into NetTracer3D, although it does offer its own segmentation via intensity and volumetric thresholding, or random forest machine learning segmentation. NetTracer3D currently has a fully functional GUI. To use the GUI, after installing the nettracer3d package via pip, enter the command 'nettracer3d' in your command prompt:
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nettracer3d-0.4.6/src/nettracer3d.egg-info/requires.txt ADDED
@@ -0,0 +1,24 @@
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+ numpy==1.26.4
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+ scipy
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+ scikit-image
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+ Pillow
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+ matplotlib
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+ networkx
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+ opencv-python-headless
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+ openpyxl
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+ pandas
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+ napari
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+ python-louvain
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+ tifffile
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+ qtrangeslider
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+ PyQt6
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+ scikit-learn
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+
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+ [CUDA11]
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+ cupy-cuda11x
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+
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+ [CUDA12]
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+ cupy-cuda12x
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+
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+ [cupy]
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+ cupy
nettracer3d-0.4.5/src/nettracer3d.egg-info/requires.txt DELETED
@@ -1,44 +0,0 @@
1
- numpy==1.26.4
2
- scipy
3
- scikit-image
4
- Pillow
5
- matplotlib
6
- networkx
7
- opencv-python-headless
8
- openpyxl
9
- pandas
10
- napari
11
- python-louvain
12
- tifffile
13
- qtrangeslider
14
- PyQt6
15
- scikit-learn
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-
17
- [CUDA11]
18
- cupy-cuda11x
19
- torch==2.2.0+cu118
20
- torchvision==0.17.0+cu118
21
- torchaudio==2.2.0+cu118
22
-
23
- [CUDA12]
24
- cupy-cuda12x
25
- torch==2.2.0+cu121
26
- torchvision==0.17.0+cu121
27
- torchaudio==2.2.0+cu121
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-
29
- [GPU]
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-
31
- [GPU:platform_system == "Darwin"]
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- cupy
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-
34
- [GPU:platform_system == "Linux" and platform_machine == "x86_64"]
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- cupy-cuda11x
36
-
37
- [GPU:platform_system == "Windows"]
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- cupy-cuda12x
39
-
40
- [cupy]
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- cupy
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- torch
43
- torchvision
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- torchaudio
{nettracer3d-0.4.5 → nettracer3d-0.4.6}/LICENSE RENAMED
File without changes
{nettracer3d-0.4.5 → nettracer3d-0.4.6}/README.md RENAMED
File without changes
{nettracer3d-0.4.5 → nettracer3d-0.4.6}/setup.cfg RENAMED
File without changes