nettracer3d 0.3.1__tar.gz → 0.3.2__tar.gz

{nettracer3d-0.3.1/src/nettracer3d.egg-info → nettracer3d-0.3.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: nettracer3d
-Version: 0.3.1
+Version: 0.3.2
 Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
 Author-email: Liam McLaughlin <boom2449@gmail.com>
 Project-URL: User_Manual, https://drive.google.com/drive/folders/1fTkz3n4LN9_VxKRKC8lVQSlrz_wq0bVn?usp=drive_link
@@ -34,8 +34,11 @@ Requires-Dist: cupy; extra == "cupy"
 NetTracer3D is a python package developed for both 2D and 3D analysis of microscopic images in the .tif file format. It supports generation of 3D networks showing the relationships between objects (or nodes) in three dimensional space, either based on their own proximity or connectivity via connecting objects such as nerves or blood vessels. In addition to these functionalities are several advanced 3D data processing algorithms, such as labeling of branched structures or abstraction of branched structures into networks. Note that nettracer3d uses segmented data, which can be segmented from other softwares such as ImageJ and imported into NetTracer3D, although it does offer its own segmentation via intensity or volumetric thresholding. NetTracer3D currently has a fully functional GUI. To use the GUI, after installing the nettracer3d package via pip, run a python script in your env with the following commands:
 
 #Start
+
 from nettracer3d import nettracer_gui
+
 nettracer_gui.run_gui()
+
 #End
 
 This gui is built from the PyQt6 package and therefore may not function on dockers or virtual envs that are unable to support PyQt6 displays. More advanced documentation (especially for the GUI) is coming down the line, but for now please see: https://drive.google.com/drive/folders/1fTkz3n4LN9_VxKRKC8lVQSlrz_wq0bVn?usp=drive_link

{nettracer3d-0.3.1 → nettracer3d-0.3.2}/README.md

@@ -1,8 +1,11 @@
 NetTracer3D is a python package developed for both 2D and 3D analysis of microscopic images in the .tif file format. It supports generation of 3D networks showing the relationships between objects (or nodes) in three dimensional space, either based on their own proximity or connectivity via connecting objects such as nerves or blood vessels. In addition to these functionalities are several advanced 3D data processing algorithms, such as labeling of branched structures or abstraction of branched structures into networks. Note that nettracer3d uses segmented data, which can be segmented from other softwares such as ImageJ and imported into NetTracer3D, although it does offer its own segmentation via intensity or volumetric thresholding. NetTracer3D currently has a fully functional GUI. To use the GUI, after installing the nettracer3d package via pip, run a python script in your env with the following commands:
 
 #Start
+
 from nettracer3d import nettracer_gui
+
 nettracer_gui.run_gui()
+
 #End
 
 This gui is built from the PyQt6 package and therefore may not function on dockers or virtual envs that are unable to support PyQt6 displays. More advanced documentation (especially for the GUI) is coming down the line, but for now please see: https://drive.google.com/drive/folders/1fTkz3n4LN9_VxKRKC8lVQSlrz_wq0bVn?usp=drive_link

{nettracer3d-0.3.1 → nettracer3d-0.3.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "nettracer3d"
-version = "0.3.1"
+version = "0.3.2"
 authors = [
   { name="Liam McLaughlin", email="boom2449@gmail.com" },
 ]

{nettracer3d-0.3.1 → nettracer3d-0.3.2}/src/nettracer3d/nettracer_gui.py

@@ -4949,7 +4949,7 @@ class ResizeDialog(QDialog):
                 if self.parent().highlight_overlay is not None:
                     self.parent().highlight_overlay = n3d.resize(self.parent().highlight_overlay, resize, order)
                 if my_network.search_region is not None:
-                    my_network.search_region = n3d.resize(search_region, resize, order)
+                    my_network.search_region = n3d.resize(my_network.search_region, resize, order)
 
 
             else:
@@ -4966,7 +4966,7 @@ class ResizeDialog(QDialog):
                 if self.parent().highlight_overlay is not None:
                     self.parent().highlight_overlay = n3d.upsample_with_padding(self.parent().highlight_overlay, original_shape = self.parent().original_shape)
 
-                my_network.search_region = n3d.upsample_with_padding(search_region, original_shape = self.parent().original_shape)
+                my_network.search_region = n3d.upsample_with_padding(my_network.search_region, original_shape = self.parent().original_shape)
 
             
             # Update slider range based on new z-dimension

{nettracer3d-0.3.1 → nettracer3d-0.3.2/src/nettracer3d.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: nettracer3d
-Version: 0.3.1
+Version: 0.3.2
 Summary: Scripts for intializing and analyzing networks from segmentations of three dimensional images.
 Author-email: Liam McLaughlin <boom2449@gmail.com>
 Project-URL: User_Manual, https://drive.google.com/drive/folders/1fTkz3n4LN9_VxKRKC8lVQSlrz_wq0bVn?usp=drive_link
@@ -34,8 +34,11 @@ Requires-Dist: cupy; extra == "cupy"
 NetTracer3D is a python package developed for both 2D and 3D analysis of microscopic images in the .tif file format. It supports generation of 3D networks showing the relationships between objects (or nodes) in three dimensional space, either based on their own proximity or connectivity via connecting objects such as nerves or blood vessels. In addition to these functionalities are several advanced 3D data processing algorithms, such as labeling of branched structures or abstraction of branched structures into networks. Note that nettracer3d uses segmented data, which can be segmented from other softwares such as ImageJ and imported into NetTracer3D, although it does offer its own segmentation via intensity or volumetric thresholding. NetTracer3D currently has a fully functional GUI. To use the GUI, after installing the nettracer3d package via pip, run a python script in your env with the following commands:
 
 #Start
+
 from nettracer3d import nettracer_gui
+
 nettracer_gui.run_gui()
+
 #End
 
 This gui is built from the PyQt6 package and therefore may not function on dockers or virtual envs that are unable to support PyQt6 displays. More advanced documentation (especially for the GUI) is coming down the line, but for now please see: https://drive.google.com/drive/folders/1fTkz3n4LN9_VxKRKC8lVQSlrz_wq0bVn?usp=drive_link