nested-fit 5.6.7.dev124__tar.gz → 5.6.8.dev127__tar.gz

{nested_fit-5.6.7.dev124 → nested_fit-5.6.8.dev127}/.gitignore

@@ -50,3 +50,6 @@ wheelhouse/
 
 # FBuild config file
 .fbuild.lua
+
+# Temporary files
+tmp/

{nested_fit-5.6.7.dev124 → nested_fit-5.6.8.dev127}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nested_fit
-Version: 5.6.7.dev124
+Version: 5.6.8.dev127
 Summary: The nested_fit package.
 Author: Martino Trassinelli, Lune Maillard, César Godinho
 Project-URL: Homepage, https://github.com/martinit18/nested_fit
@@ -41,10 +41,9 @@ Users are also required to cite the Nested Fit papers here below in their public
 
 **Reference articles of nested_fit**:
 - [A] M. Trassinelli, *Bayesian data analysis tools for atomic physics*, Nucl. Instrum. Methods B **408**, 301-312 (2017),
-[doi:10.1016/j.nimb.2017.05.030](http://dx.doi.org/10.1016/j.nimb.2017.05.030),  [	arXiv:1611.10189](https://arxiv.org/abs/1611.10189)\
-- [B] M. Trassinelli, *The Nested_fit Data Analysis Program*, Proceedings **33**, 14 (2019), [doi:10.3390/proceedings2019033014](https://doi.org/10.3390/proceedings2019033014)\
+[doi:10.1016/j.nimb.2017.05.030](http://dx.doi.org/10.1016/j.nimb.2017.05.030),  [arXiv:1611.10189](https://arxiv.org/abs/1611.10189)
+- [B] M. Trassinelli, *The Nested_fit Data Analysis Program*, Proceedings **33**, 14 (2019), [doi:10.3390/proceedings2019033014](https://doi.org/10.3390/proceedings2019033014)
 - [C] M. Trassinelli, P. Ciccodicola *Mean Shift Cluster Recognition Method Implementation in the Nested Sampling Algorithm*, Entropy **22**, 185 (2020), [doi:10.3390/e22020185](https://doi.org/10.3390/e22020185)
-\
 - [D] L. Maillard, F. Finocchi, M. Trassinelli * *Assessing Search and Unsupervised Clustering Algorithms in Nested Sampling*, Entropy **25**, 347 (2023), [doi:10.3390/e25020347](https://doi.org/10.3390/e25020347)
 
 ### Authors
@@ -67,6 +66,8 @@ email: c.godinho AT campus.fct.unl.pt
 [Download](https://github.com/martinit18/nested_fit/blob/dev/examples/jupyter_notebooks/quick_start_with_google_colab.ipynb)
 [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/martinit18/nested_fit/blob/dev/examples/jupyter_notebooks/quick_start_with_google_colab.ipynb)
 
+If you want to start to use a program in the jupyter environment, start with `examples/jupyter_notebooks/simple_analysis_visu.ipynb`
+
 Other jupyter notebook examples can be found in `examples/jupyter_notebooks`.
 
 ## Installation instructions
@@ -148,22 +149,23 @@ This 'hack' is done via the editable installation mode:
 git clone https://github.com/martinit18/nested_fit.git
 
 # Make build directory
-mkdir -p nested_fit/build
+cd nested_fit
+mkdir -p build
 
 # Configure (and specify install prefix if required)
-cmake -S nested_fit -B nested_fit/build -DOPENMP=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=<install_path>
+cmake -S nested_fit -B build -DOPENMP=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=<install_path>
 
 # Compile and install
-cmake --build nested_fit/build --config Release
+cmake --build build --config Release
 
 # Now you will have the nested_fit binary available at nested_fit/bin/nested_fit_xxx
 export PATH=$PATH:<your_clone_path>/nested_fit/bin
 
 # Or alternatively install from within your build tool
-cmake --build nested_fit/build --target install
+cmake --build build --target install
 
 # Now install the python library in editable mode skipping compilation
-pip install -e ./nested_fit -v
+pip install -e . -v
 ```
 
 :warning: If you have further issues please refer to the file *STEPBYSTEP_INSTALL.md*.
@@ -444,8 +446,10 @@ Examples of use of a legacy function can be found in `examples/data_analysis/aaa
 
 ## Present version and history of the past versions
 
-The present version is 5.6.4\
+The present version is 5.6.8\
 New features:
+- New 2D Lennard-Jones functions added
+- New benchmark notebook available
 - New function to visualizing the capacty heat for POTENTIAL calculations
 - Latex input support for compound variable names (i.e. x_{sub})
 - PyPI available development builds
@@ -453,6 +457,7 @@ New features:
 - Optional management of memory of dead points (in RAM or file)
 - Optional writing of dead points information
 - Optional writing of parameter statistics (mean, standard deviation, etc.)
+- Persistent option commands cache
 
 
 Previous versions are:

{nested_fit-5.6.7.dev124 → nested_fit-5.6.8.dev127}/README.md

@@ -16,10 +16,9 @@ Users are also required to cite the Nested Fit papers here below in their public
 
 **Reference articles of nested_fit**:
 - [A] M. Trassinelli, *Bayesian data analysis tools for atomic physics*, Nucl. Instrum. Methods B **408**, 301-312 (2017),
-[doi:10.1016/j.nimb.2017.05.030](http://dx.doi.org/10.1016/j.nimb.2017.05.030),  [	arXiv:1611.10189](https://arxiv.org/abs/1611.10189)\
-- [B] M. Trassinelli, *The Nested_fit Data Analysis Program*, Proceedings **33**, 14 (2019), [doi:10.3390/proceedings2019033014](https://doi.org/10.3390/proceedings2019033014)\
+[doi:10.1016/j.nimb.2017.05.030](http://dx.doi.org/10.1016/j.nimb.2017.05.030),  [arXiv:1611.10189](https://arxiv.org/abs/1611.10189)
+- [B] M. Trassinelli, *The Nested_fit Data Analysis Program*, Proceedings **33**, 14 (2019), [doi:10.3390/proceedings2019033014](https://doi.org/10.3390/proceedings2019033014)
 - [C] M. Trassinelli, P. Ciccodicola *Mean Shift Cluster Recognition Method Implementation in the Nested Sampling Algorithm*, Entropy **22**, 185 (2020), [doi:10.3390/e22020185](https://doi.org/10.3390/e22020185)
-\
 - [D] L. Maillard, F. Finocchi, M. Trassinelli * *Assessing Search and Unsupervised Clustering Algorithms in Nested Sampling*, Entropy **25**, 347 (2023), [doi:10.3390/e25020347](https://doi.org/10.3390/e25020347)
 
 ### Authors
@@ -42,6 +41,8 @@ email: c.godinho AT campus.fct.unl.pt
 [Download](https://github.com/martinit18/nested_fit/blob/dev/examples/jupyter_notebooks/quick_start_with_google_colab.ipynb)
 [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/martinit18/nested_fit/blob/dev/examples/jupyter_notebooks/quick_start_with_google_colab.ipynb)
 
+If you want to start to use a program in the jupyter environment, start with `examples/jupyter_notebooks/simple_analysis_visu.ipynb`
+
 Other jupyter notebook examples can be found in `examples/jupyter_notebooks`.
 
 ## Installation instructions
@@ -123,22 +124,23 @@ This 'hack' is done via the editable installation mode:
 git clone https://github.com/martinit18/nested_fit.git
 
 # Make build directory
-mkdir -p nested_fit/build
+cd nested_fit
+mkdir -p build
 
 # Configure (and specify install prefix if required)
-cmake -S nested_fit -B nested_fit/build -DOPENMP=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=<install_path>
+cmake -S nested_fit -B build -DOPENMP=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=<install_path>
 
 # Compile and install
-cmake --build nested_fit/build --config Release
+cmake --build build --config Release
 
 # Now you will have the nested_fit binary available at nested_fit/bin/nested_fit_xxx
 export PATH=$PATH:<your_clone_path>/nested_fit/bin
 
 # Or alternatively install from within your build tool
-cmake --build nested_fit/build --target install
+cmake --build build --target install
 
 # Now install the python library in editable mode skipping compilation
-pip install -e ./nested_fit -v
+pip install -e . -v
 ```
 
 :warning: If you have further issues please refer to the file *STEPBYSTEP_INSTALL.md*.
@@ -419,8 +421,10 @@ Examples of use of a legacy function can be found in `examples/data_analysis/aaa
 
 ## Present version and history of the past versions
 
-The present version is 5.6.4\
+The present version is 5.6.8\
 New features:
+- New 2D Lennard-Jones functions added
+- New benchmark notebook available
 - New function to visualizing the capacty heat for POTENTIAL calculations
 - Latex input support for compound variable names (i.e. x_{sub})
 - PyPI available development builds
@@ -428,6 +432,7 @@ New features:
 - Optional management of memory of dead points (in RAM or file)
 - Optional writing of dead points information
 - Optional writing of parameter statistics (mean, standard deviation, etc.)
+- Persistent option commands cache
 
 
 Previous versions are: