nest-simulator 0.0.1.dev0__tar.gz → 3.9.0.post0.dev14__tar.gz

nest_simulator-3.9.0.post0.dev14/.clang-format

@@ -0,0 +1,124 @@
+Language:        Cpp
+AccessModifierOffset: -2
+AlignAfterOpenBracket: DontAlign
+AlignConsecutiveMacros: false
+AlignConsecutiveAssignments: false
+AlignConsecutiveDeclarations: false
+AlignEscapedNewlines: Left
+AlignOperands:   false
+AlignTrailingComments: true
+AllowAllArgumentsOnNextLine: true
+AllowAllConstructorInitializersOnNextLine: true
+AllowAllParametersOfDeclarationOnNextLine: false
+AllowShortBlocksOnASingleLine: false
+AllowShortCaseLabelsOnASingleLine: false
+AllowShortFunctionsOnASingleLine: None
+AllowShortLambdasOnASingleLine: All
+AllowShortIfStatementsOnASingleLine: Never
+AllowShortLoopsOnASingleLine: false
+AlwaysBreakAfterDefinitionReturnType: All
+AlwaysBreakAfterReturnType: AllDefinitions
+AlwaysBreakBeforeMultilineStrings: true
+AlwaysBreakTemplateDeclarations: Yes
+BinPackArguments: false
+BinPackParameters: false
+BraceWrapping:
+  AfterCaseLabel:  true
+  AfterClass:      true
+  AfterControlStatement: true
+  AfterEnum:       true
+  AfterFunction:   true
+  AfterNamespace:  true
+  AfterObjCDeclaration: true
+  AfterStruct:     true
+  AfterUnion:      false
+  AfterExternBlock: true
+  BeforeCatch:     true
+  BeforeElse:      true
+  IndentBraces:    false
+  SplitEmptyFunction: true
+  SplitEmptyRecord: true
+  SplitEmptyNamespace: true
+BreakBeforeBinaryOperators: NonAssignment
+BreakBeforeBraces: Allman
+BreakBeforeInheritanceComma: false
+BreakInheritanceList: BeforeColon
+BreakBeforeTernaryOperators: true
+BreakConstructorInitializersBeforeComma: false
+BreakConstructorInitializers: BeforeComma
+BreakAfterJavaFieldAnnotations: false
+BreakStringLiterals: true
+ColumnLimit:     120
+CommentPragmas:  '^ IWYU pragma:'
+CompactNamespaces: false
+ConstructorInitializerAllOnOneLineOrOnePerLine: false
+ConstructorInitializerIndentWidth: 2
+ContinuationIndentWidth: 2
+Cpp11BracedListStyle: false
+DerivePointerAlignment: false
+DisableFormat:   false
+ExperimentalAutoDetectBinPacking: false
+FixNamespaceComments: false
+ForEachMacros:
+  - foreach
+  - Q_FOREACH
+  - BOOST_FOREACH
+IncludeBlocks:   Preserve
+IncludeCategories:
+  - Regex:           '^"(llvm|llvm-c|clang|clang-c)/'
+    Priority:        2
+  - Regex:           '^(<|"(gtest|gmock|isl|json)/)'
+    Priority:        3
+  - Regex:           '.*'
+    Priority:        1
+IncludeIsMainRegex: '(Test)?$'
+IndentCaseLabels: false
+IndentPPDirectives: None
+IndentWidth:     2
+IndentWrappedFunctionNames: false
+InsertBraces: true
+JavaScriptQuotes: Leave
+JavaScriptWrapImports: true
+KeepEmptyLinesAtTheStartOfBlocks: true
+MacroBlockBegin: ''
+MacroBlockEnd:   ''
+MaxEmptyLinesToKeep: 2
+NamespaceIndentation: None
+ObjCBinPackProtocolList: Auto
+ObjCBlockIndentWidth: 4
+ObjCSpaceAfterProperty: true
+ObjCSpaceBeforeProtocolList: true
+PenaltyBreakAssignment: 2
+PenaltyBreakBeforeFirstCallParameter: 19
+PenaltyBreakComment: 300
+PenaltyBreakFirstLessLess: 120
+PenaltyBreakString: 1000
+PenaltyBreakTemplateDeclaration: 10
+PenaltyExcessCharacter: 1000000
+PenaltyReturnTypeOnItsOwnLine: 60
+PointerAlignment: Left
+ReflowComments:  true
+SortIncludes:    true
+SortUsingDeclarations: true
+SpaceAfterCStyleCast: true
+SpaceAfterLogicalNot: false
+SpaceAfterTemplateKeyword: true
+SpaceBeforeAssignmentOperators: true
+SpaceBeforeCpp11BracedList: true
+SpaceBeforeCtorInitializerColon: true
+SpaceBeforeInheritanceColon: true
+SpaceBeforeParens: ControlStatements
+SpaceBeforeRangeBasedForLoopColon: true
+SpaceInEmptyParentheses: false
+SpacesBeforeTrailingComments: 2
+SpacesInAngles:  true
+SpacesInContainerLiterals: true
+SpacesInCStyleCastParentheses: true
+SpacesInParentheses: true
+SpacesInSquareBrackets: true
+Standard:        Cpp03
+StatementMacros:
+  - Q_UNUSED
+  - QT_REQUIRE_VERSION
+TabWidth:        8
+UseTab:          Never

nest_simulator-3.9.0.post0.dev14/.clang-tidy

@@ -0,0 +1 @@
+Checks: '-*,modernize-use-nullptr,modernize-use-override,bugprone,modernize-redundant-void-arg'

nest_simulator-3.9.0.post0.dev14/.cppcheck_suppressions

@@ -0,0 +1,36 @@
+invalidPrintfArgType_sint:./
+invalidscanf:./
+unknownMacro:./testsuite/cpptests/test_target_fields.h
+useStlAlgorithm:./
+variableScope:./
+shadowVariable:./
+shadowFunction:./
+constParameter:./
+postfixOperator:./
+passedByValue:./
+virtualCallInConstructor:./
+uninitMemberVar:./
+noExplicitConstructor:./
+missingOverride:./
+identicalConditionAfterEarlyExit:./
+unreadVariable:./
+clarifyCondition:./
+toomanyconfigs:./
+unusedPrivateFunction:./
+unusedVariable:./
+shadowArgument:./
+useInitializationList:./
+noConstructor:./
+stlcstrReturn:./
+ConfigurationNotChecked:./
+unusedStructMember:./
+unpreciseMathCall:./
+operatorEqVarError:./
+duplicateExpression:./
+// integerOverflow:./
+ignoredReturnValue:./
+unusedFunction:./
+duplicateCondition:./
+nullPointer:./
+missingInclude:./
+uninitvar:./

nest_simulator-3.9.0.post0.dev14/.git-blame-ignore-revs

@@ -0,0 +1 @@
+d7c5ae98686622fe0b5298566d35df828be8f841

nest_simulator-3.9.0.post0.dev14/.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,38 @@
+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+**To Reproduce**
+Steps to reproduce the behavior:
+1. (Minimal) reproducing example
+2. Used parameters
+3. Command to run
+4. How to see error
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Desktop/Environment (please complete the following information):**
+ - OS: [e.g. iOS, Ubuntu-18.04]
+ - Browser: [if applicable, e.g. chrome, safari]
+ - Shell: [e.g. bash, zsh]
+ - Python-Version: [e.g. Python 3.6]
+ - NEST-Version: [e.g. nest-2.18, or git hash]
+ - Installation: [e.g. conda packet, apt, with/out MPI, ...]
+   (in case you compiled the source code manually, provide the
+    "Installation Summary" that you see at the end of the
+    cmake step)
+
+**Additional context**
+Add any other context about the problem here.

nest_simulator-3.9.0.post0.dev14/.github/ISSUE_TEMPLATE/documentation_improvement.md

@@ -0,0 +1,23 @@
+---
+name: Documentation improvement
+about: Request a documentation improvement
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Describe the flaw**
+A clear description of what the error or weakness in the documentation is.
+
+**Suggest an improvement**
+A clear description of what you want to change or add to the documentation.
+
+**Supporting materials**
+If applicable, add links or screenshots to help explain the flaw.
+
+**Desktop/Environment**
+If applicable, please specify the environment this is relevant for (e.g. "documentation regarding MacOS" or "does not render in Firefox").
+
+**Additional context**
+Add any other context about the documentation flaw here.

nest_simulator-3.9.0.post0.dev14/.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,20 @@
+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. For example,  I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

nest_simulator-3.9.0.post0.dev14/.github/dependabot.yml

@@ -0,0 +1,11 @@
+version: 2
+updates:
+  - package-ecosystem: github-actions
+    directory: /
+    schedule:
+      interval: daily
+
+  - package-ecosystem: pip
+    directory: /doc
+    schedule:
+      interval: daily

nest_simulator-3.9.0.post0.dev14/.github/styles/Vocab/nest-vocab/accept.txt

@@ -0,0 +1,24 @@
+NEST
+GIDCollection
+iaf
+aeif
+psc
+cond
+Hodgkin
+Huxley
+clopath
+stdp
+stp
+mpi
+vp
+rng
+excitatory
+inhibitory
+HEP
+JME
+Plesser
+Eppler
+Hahne
+Senk
+Jordan
+Kunkel

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/Abbreviations.yml

@@ -0,0 +1,12 @@
+---
+extends: substitution
+message: Use '%s' instead of '%s'
+ignorecase: false
+level: error
+nonword: true
+swap:
+  '\beg\b': e.g.,
+  '\bie\b': i.e.,
+  'e\.g\.(?:[^,]|$)': e.g.,
+  'i\.e\.(?:[^,]|$)': i.e.,
+  '(?i)\d{1,2} ?[ap]m': a.m. or p.m.

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/Ampersands.yml

@@ -0,0 +1,7 @@
+---
+extends: existence
+message: "Don't use ampersands unless one is part of a company or brand name."
+level: warning
+nonword: true
+tokens:
+  - '\w+\s&\s\w+'

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/Annotations.yml

@@ -0,0 +1,10 @@
+---
+extends: existence
+message: "'%s' left in text."
+ignorecase: false
+level: error
+tokens:
+  - XXX
+  - FIXME
+  - TODO
+  - NOTE

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/Capitalization.yml

@@ -0,0 +1,6 @@
+---
+extends: capitalization
+message: "'%s' should be in sentence case"
+level: warning
+scope: heading
+match: $sentence

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/CommasPerSentence.yml

@@ -0,0 +1,6 @@
+---
+message: "More than 3 commas!"
+extends: occurrence
+scope: sentence
+max: 3
+token: ','

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/ComplexWords.yml

@@ -0,0 +1,120 @@
+---
+extends: substitution
+message: Consider using %s instead of '%s'
+ignorecase: true
+level: warning
+swap:
+  'approximate(?:ly)?': "'about'"
+  absent: "'none' or 'not here'"
+  abundance: "'plenty'"
+  accelerate: "'speed up'"
+  accentuate: "'stress'"
+  accompany: "'go with'"
+  accomplish: "'carry out' or 'do'"
+  accorded: "'given'"
+  accordingly: "'so'"
+  accrue: "'add'"
+  accurate: "'right' or 'exact'"
+  acquiesce: "'agree'"
+  acquire: "'get' or 'buy'"
+  additional: "'more' or 'extra'"
+  address: "'discuss'"
+  addressees: "'you'"
+  adjacent to: "'next to'"
+  adjustment: "'change'"
+  admissible: "'allowed'"
+  advantageous: "'helpful'"
+  advise: "'tell'"
+  aggregate: "'total'"
+  aircraft: "'plane'"
+  alleviate: "'ease'"
+  allocate: "'assign' or 'divide'"
+  alternatively: "'or'"
+  alternatives: "'choices' or 'options'"
+  ameliorate: "'improve'"
+  amend: "'change'"
+  anticipate: "'expect'"
+  apparent: "'clear' or 'plain'"
+  ascertain: "'discover' or 'find out'"
+  assistance: "'help'"
+  attain: "'meet'"
+  attempt: "'try'"
+  authorize: "'allow'"
+  belated: "'late'"
+  bestow: "'give'"
+  cease: "'stop' or 'end'"
+  collaborate: "'work together'"
+  commence: "'begin'"
+  compensate: "'pay'"
+  component: "'part'"
+  comprise: "'form' or 'include'"
+  concept: "'idea'"
+  concerning: "'about'"
+  confer: "'give' or 'award'"
+  consequently: "'so'"
+  consolidate: "'merge'"
+  constitutes: "'forms'"
+  contains: "'has'"
+  convene: "'meet'"
+  demonstrate: "'show' or 'prove'"
+  depart: "'leave'"
+  designate: "'choose'"
+  desire: "'want' or 'wish'"
+  determine: "'decide' or 'find'"
+  detrimental: "'bad' or 'harmful'"
+  disclose: "'share' or 'tell'"
+  discontinue: "'stop'"
+  disseminate: "'send' or 'give'"
+  eliminate: "'end'"
+  elucidate: "'explain'"
+  employ: "'use'"
+  enclosed: "inside or 'included'"
+  encounter: "'meet'"
+  endeavor: "'try'"
+  enumerate: "'count'"
+  equitable: "'fair'"
+  equivalent: "'equal'"
+  exclusively: "'only'"
+  expedite: "'hurry'"
+  facilitate: "'ease'"
+  females: "'women'"
+  finalize: "'complete' or 'finish'"
+  frequently: "'often'"
+  identical: "'same'"
+  incorrect: "'wrong'"
+  indication: "'sign'"
+  initiate: "'start' or 'begin'"
+  itemized: "'listed'"
+  jeopardize: "'risk'"
+  liaise: "'work with' or 'partner with'"
+  maintain: "'keep' or 'support'"
+  methodology: "'method'"
+  modify: "'change'"
+  monitor: "'check' or 'watch'"
+  multiple: "'many'"
+  necessitate: "'cause'"
+  notify: "'tell'"
+  numerous: "'many'"
+  objective: "'aim' or 'goal'"
+  obligate: "'bind' or 'compel'"
+  optimum: "'best' or 'most'"
+  permit: "'let'"
+  portion: "'part'"
+  possess: "'own'"
+  previous: "'earlier'"
+  previously: "'before'"
+  prioritize: "'rank'"
+  procure: "'buy'"
+  provide: "'give' or 'offer'"
+  purchase: "'buy'"
+  relocate: "'move'"
+  request: "'ask'"
+  solicit: "'request'"
+  state-of-the-art: "'latest'"
+  subsequent: "'later' or 'next'"
+  substantial: "'large'"
+  sufficient: "'enough'"
+  terminate: "'end'"
+  transmit: "'send'"
+  utilization: "'use'"
+  utilize: "'use'"

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/ListCapitalize.yml

@@ -0,0 +1,8 @@
+---
+extends: existence
+message: "Capitalize the first word in a list."
+level: warning
+scope: list
+nonword: true
+tokens:
+  - '^[a-z].+'

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/Negative.yml

@@ -0,0 +1,11 @@
+---
+extends: existence
+message: "Use positive language rather than negative language like “%s.”"
+link: http://styleguide.mailchimp.com/grammar-and-mechanics/#header-3-write-positively
+level: warning
+tokens:
+  - can't
+  - won't
+  - don't
+  - doesn't
+  - hasn't

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/NotEasy.yml

@@ -0,0 +1,10 @@
+---
+extends: existence
+message: Consider removing '%s'
+ignorecase: true
+level: warning
+tokens:
+  - simple
+  - just
+  - easily
+  - simply

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/OxfordComma.yml

@@ -0,0 +1,8 @@
+---
+extends: existence
+message: 'Use the Oxford comma in a list of three or more items.'
+link: 'https://contribute.jquery.org/style-guide/prose/#grammar'
+scope: sentence
+level: warning
+tokens:
+  - '(?:[^,]+,){1,}\s\w+\sand'

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/ParagraphLength.yml

@@ -0,0 +1,7 @@
+---
+message: "Paragraphs should be less than 150 words"
+extends: occurrence
+scope: paragraph.rst
+level: suggestion
+max: 150
+token: \b(\w+)\b

nest_simulator-3.9.0.post0.dev14/.github/styles/nest-styles/PassiveVoice.yml

@@ -0,0 +1,184 @@
+---
+extends: existence
+message: '"%s" is passive voice; consider changing sentence'
+ignorecase: true
+level: warning
+raw:
+  - \b(am|are|were|being|is|been|was|be)\b\s*
+tokens:
+  - '[\w]+ed'
+  - awoken
+  - beat
+  - become
+  - been
+  - begun
+  - bent
+  - beset
+  - bet
+  - bid
+  - bidden
+  - bitten
+  - bled
+  - blown
+  - born
+  - bought
+  - bound
+  - bred
+  - broadcast
+  - broken
+  - brought
+  - built
+  - burnt
+  - burst
+  - cast
+  - caught
+  - chosen
+  - clung
+  - come
+  - cost
+  - crept
+  - cut
+  - dealt
+  - dived
+  - done
+  - drawn
+  - dreamt
+  - driven
+  - drunk
+  - dug
+  - eaten
+  - fallen
+  - fed
+  - felt
+  - fit
+  - fled
+  - flown
+  - flung
+  - forbidden
+  - foregone
+  - forgiven
+  - forgotten
+  - forsaken
+  - fought
+  - found
+  - frozen
+  - given
+  - gone
+  - gotten
+  - ground
+  - grown
+  - heard
+  - held
+  - hidden
+  - hit
+  - hung
+  - hurt
+  - kept
+  - knelt
+  - knit
+  - known
+  - laid
+  - lain
+  - leapt
+  - learnt
+  - led
+  - left
+  - lent
+  - let
+  - lighted
+  - lost
+  - made
+  - meant
+  - met
+  - misspelt
+  - mistaken
+  - mown
+  - overcome
+  - overdone
+  - overtaken
+  - overthrown
+  - paid
+  - pled
+  - proven
+  - put
+  - quit
+  - read
+  - rid
+  - ridden
+  - risen
+  - run
+  - rung
+  - said
+  - sat
+  - sawn
+  - seen
+  - sent
+  - set
+  - sewn
+  - shaken
+  - shaven
+  - shed
+  - shod
+  - shone
+  - shorn
+  - shot
+  - shown
+  - shrunk
+  - shut
+  - slain
+  - slept
+  - slid
+  - slit
+  - slung
+  - smitten
+  - sold
+  - sought
+  - sown
+  - sped
+  - spent
+  - spilt
+  - spit
+  - split
+  - spoken
+  - spread
+  - sprung
+  - spun
+  - stolen
+  - stood
+  - stridden
+  - striven
+  - struck
+  - strung
+  - stuck
+  - stung
+  - stunk
+  - sung
+  - sunk
+  - swept
+  - swollen
+  - sworn
+  - swum
+  - swung
+  - taken
+  - taught
+  - thought
+  - thrived
+  - thrown
+  - thrust
+  - told
+  - torn
+  - trodden
+  - understood
+  - upheld
+  - upset
+  - wed
+  - wept
+  - withheld
+  - withstood
+  - woken
+  - won
+  - worn
+  - wound
+  - woven
+  - written
+  - wrung