nerdd-module 0.3.53__tar.gz → 0.3.55__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/PKG-INFO +1 -1
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/model/prediction_step.py +5 -9
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module.egg-info/PKG-INFO +1 -1
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/pyproject.toml +3 -1
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/LICENSE +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/README.md +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/cli.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/config/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/config/configuration.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/config/default_configuration.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/config/dict_configuration.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/config/merged_configuration.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/config/models.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/config/package_configuration.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/config/search_yaml_configuration.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/config/yaml_configuration.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/converters/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/converters/basic_type_converter.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/converters/converter.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/converters/converter_config.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/converters/mol_converter.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/converters/problem_list_converter.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/converters/representation_converter.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/converters/source_list_converter.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/converters/void_converter.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/depth_first_explorer.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/explorer.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/file_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/gzip_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/inchi_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/list_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/mol_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/reader_config.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/sdf_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/smiles_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/stream_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/string_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/tar_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/input/zip_reader.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/model/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/model/assign_name_step.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/model/convert_representations_step.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/model/enforce_schema_step.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/model/model.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/model/read_input_step.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/model/write_output_step.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/output/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/output/csv_writer.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/output/file_writer.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/output/iterator_writer.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/output/pandas_writer.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/output/record_list_writer.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/output/sdf_writer.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/output/writer.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/output/writer_config.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/polyfills/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/polyfills/block_logs.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/polyfills/files.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/polyfills/get_entry_points.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/polyfills/literal.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/polyfills/typed_dict.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/polyfills/types.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/polyfills/version.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/check_valid_smiles.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/chembl_structure_pipeline.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/filter_by_element.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/filter_by_weight.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/preprocessing_step.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/remove_hydrogens.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/remove_small_fragments.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/remove_stereochemistry.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/preprocessing/sanitize.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/problem.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/py.typed +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/steps/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/steps/map_step.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/steps/output_step.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/steps/step.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/checks.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/files.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/models/AtomicMassModel.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/models/MolWeightModel.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/models/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/predictions.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/preprocessing/DummyPreprocessingStep.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/preprocessing/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/tests/representations.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/util/__init__.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/util/call_with_mappings.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/util/package.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module/version.py +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module.egg-info/SOURCES.txt +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module.egg-info/dependency_links.txt +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module.egg-info/requires.txt +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/nerdd_module.egg-info/top_level.txt +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/setup.cfg +0 -0
- {nerdd_module-0.3.53 → nerdd_module-0.3.55}/tests/test_features.py +0 -0
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# 3. the list of predictions has as many records as the batch (and we assume
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# that the order of the molecules stayed the same)
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if all("mol_id" in record for record in predictions):
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# convert mol_id to int (or raise an error if it is not possible)
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for record in predictions:
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record["mol_id"] = int(record["mol_id"])
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elif all("mol" in record for record in predictions):
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# check that molecule names contain only valid ids
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for record in predictions:
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for record in records:
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sub_id = record.get(sub_id_property)
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if sub_id is not None:
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#
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raise ValueError(
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f"The {sub_id_property} must be an integer, but got {sub_id}. "
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f"Record: {record}"
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)
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sub_ids.add(sub_id)
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# cast sub_id to int (or raise an error if it is not possible)
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sub_ids.add(int(sub_id))
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if (
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len(records) == 1
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[project]
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name = "nerdd-module"
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version = "0.3.
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version = "0.3.55"
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description = "Base package to create NERDD modules"
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readme = "README.md"
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license = "BSD-3-Clause"
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@@ -89,6 +89,8 @@ Repository = "https://github.com/molinfo-vienna/nerdd-module"
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# TOOLS
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#
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[tool.setuptools.packages.find]
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where = ["."]
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include = ["nerdd_module*"]
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